JakeHillion/nixpkgs
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680 Commits

Author SHA1 Message Date
Michael Raskin
dd6ef6229e Merge pull request #226 from maggesi/hol_light_updates 
Update HOL Light (and fix installation)
 2012-12-27 05:33:24 -08:00
Peter Simons
591f85f17e celestia: add version 1.6.1 2012-12-25 11:26:53 +01:00
Marco Maggesi
49e4824b8a Update HOL Light (and fix installation) 2012-12-23 18:46:09 +01:00
Michael Raskin
1c3434cc16 Update E prover 2012-12-09 00:36:38 +04:00
Michael Raskin
8a1f312621 Update golly 2012-12-04 10:10:28 +04:00
Eelco Dolstra
5553546c21 Remove a bunch of unreferenced files 
Plus a small number of obsolete packages (like old versions of qemu).
 2012-11-29 13:43:37 +01:00
Peter Simons
614c7501bc Merge pull request #193 from badi/gromacs 
Add Gromacs
 2012-11-28 01:16:17 -08:00
Shea Levy
3b8796ee9d Fix tarball 2012-11-26 20:31:45 -05:00
Florian Friesdorf
6a17fe1563 fix xoscope - thx archlinux! 2012-11-26 16:07:51 +01:00
Badi' Abdul-Wahid
06c522f739 remove reference to meta.nix 2012-11-23 15:46:49 +01:00
Badi' Abdul-Wahid
cba15c96f6 fix skipped indentation 2012-11-23 15:45:19 +01:00
Badi' Abdul-Wahid
7bdcb521b2 Update based on comments to pull request 2012-11-23 15:29:17 +01:00
Badi' Abdul-Wahid
85a33507ea Add GROMACS v4.5.5 2012-11-23 03:38:13 +01:00
Peter Simons
0757af1693 qfsm: add version 0.53.0 2012-11-11 20:32:41 +01:00
Mathijs Kwik
5406e02594 tkgate: limit to i686-linux and x86_64-linux to fix channel build 
powerpc-linux seems to have a problem
http://hydra.nixos.org/build/3315312
 2012-11-11 14:12:42 +01:00
Peter Simons
86fa903f6c tkgate: add versions 1.8.7 and 2.0-b10 2012-11-08 17:30:50 +01:00
Peter Simons
85145941fa kicad: update homepage URL 2012-10-28 17:27:30 +01:00
Peter Simons
29035e15a4 ng-spice-rework: update to version 24 2012-10-28 17:27:13 +01:00
Peter Simons
a29717f41f stellarium: update to version 0.11.4 2012-10-19 10:19:41 +02:00
Peter Simons
24ec840736 wxmaxima: update to version 12.09.0 2012-10-19 10:12:31 +02:00
Peter Simons
5c59edb8f4 maxima: update to version 5.28.0 2012-10-19 10:12:31 +02:00
Peter Simons
64556b022b gravit: update to version 0.5.0 2012-10-10 19:25:42 +02:00
Russell O'Connor
46d9146d64 Update SSReflect to version 1.4 2012-09-10 23:15:54 +02:00
Marco Maggesi
286d068b37 Upgrade Isabelle proof assistant to version 2012 2012-09-04 14:34:31 +02:00
Russell O'Connor
525b8015e7 Fixing configure patch for coq 8.3. 2012-08-19 01:11:11 -04:00
Russell O'Connor
eafd2008f1 Correcting filename. 2012-08-19 01:06:15 -04:00
Russell O'Connor
706cbc9318 Update coq to 8.4 2012-08-19 01:01:30 -04:00
Lluís Batlle i Rossell
c88f2ecbcd gtkwave: updating to 3.3.39 2012-08-10 16:54:00 +02:00
Peter Simons
b8d0aebe51 stellarium: update to version 0.11.3 2012-08-04 13:00:29 +02:00
Shea Levy
c5c41832f0 Merge branch 'tptp-5.4.0' of https://github.com/7c6f434c/nixpkgs 
Update tptp to 5.4

It builds, and the change is a simple version+hash update.
 2012-07-07 20:36:15 -04:00
Peter Simons
55ea7dc453 wxmaxima: update to version 12.04.0 2012-07-07 22:20:18 +02:00
Peter Simons
0c107996d3 maxima: update to version 5.27.0 2012-07-07 22:20:18 +02:00
Michael Raskin
2331ea4ec2 TPTP: update to 5.4.0 2012-07-07 20:32:48 +04:00
Yury G. Kudryashov
3640b0c1e9 Add GiNaC 
svn path=/nixpkgs/trunk/; revision=34403
 2012-06-09 13:09:41 +00:00
Marco Maggesi
5ca0b381e0 Update HOL Light to rev 141 
svn path=/nixpkgs/trunk/; revision=34290
 2012-05-30 20:53:13 +00:00
Russell O'Connor
dace27b4c4 Revert accidentaly patch of ssreflect. 
svn path=/nixpkgs/trunk/; revision=34264
 2012-05-28 20:57:54 +00:00
Russell O'Connor
417a07a0e9 Updatings ssreflect to depend on camlp5 version 6. 
svn path=/nixpkgs/trunk/; revision=34263
 2012-05-28 20:53:17 +00:00
Russell O'Connor
f02a71103a add support to make building coqide optional. 
svn path=/nixpkgs/trunk/; revision=34262
 2012-05-28 19:45:14 +00:00
Russell O'Connor
cfc8538326 Updating coq and ssreflect to patch level 4. 
svn path=/nixpkgs/trunk/; revision=34146
 2012-05-16 22:04:02 +00:00
Eelco Dolstra
bf2d945a02 * Disable some failing builds on specific platforms. 
svn path=/nixpkgs/trunk/; revision=34033
 2012-05-09 21:10:12 +00:00
Marco Maggesi
2cef87022c Update HOL Light to r134 
svn path=/nixpkgs/trunk/; revision=33992
 2012-05-05 16:46:53 +00:00
Michael Raskin
304facbf3b Adding LCI lambda calculus interpreter 
svn path=/nixpkgs/trunk/; revision=33962
 2012-05-01 05:07:39 +00:00
Michael Raskin
dd3ef46cac Update TPTP 
svn path=/nixpkgs/trunk/; revision=33754
 2012-04-12 07:23:52 +00:00
Michael Raskin
6bc87a1ac8 Add packages to GAP 
svn path=/nixpkgs/trunk/; revision=33601
 2012-04-05 04:46:11 +00:00
Peter Simons
fd8c16adb8 stellarium: updated to version 0.11.2 
svn path=/nixpkgs/trunk/; revision=33538
 2012-04-02 15:19:05 +00:00
Russell O'Connor
bba264d897 Adding forgotten configure_130312 patch for matitia. 
svn path=/nixpkgs/trunk/; revision=33433
 2012-03-26 19:11:25 +00:00
Russell O'Connor
ec5dda12d2 Reparing stable build of Matita. 
Also correcting the version and simplifying the prerelease package of Matita.


svn path=/nixpkgs/trunk/; revision=33420
 2012-03-25 21:27:30 +00:00
Russell O'Connor
510308e039 Adding a package for a preview release of Matita. 
svn path=/nixpkgs/trunk/; revision=33418
 2012-03-25 20:43:00 +00:00
Russell O'Connor
f9a5fa373e Upgrading HOL4 to version k.7. 
svn path=/nixpkgs/trunk/; revision=33306
 2012-03-20 19:11:22 +00:00
Marco Maggesi
dba8b32385 Update HOL Light to rev 128 
svn path=/nixpkgs/trunk/; revision=33196
 2012-03-17 16:36:36 +00:00
Marco Maggesi
699de0f3f9 Fix building of Coq and update to version 8.3pl3. (Forgot to save files) 
svn path=/nixpkgs/trunk/; revision=33195
 2012-03-17 16:30:23 +00:00
Marco Maggesi
af37461b11 Fix building of Coq and update to version 8.3pl3. 
svn path=/nixpkgs/trunk/; revision=33194
 2012-03-17 16:26:20 +00:00
Yury G. Kudryashov
75207a6a90 Try to update slr 
Still fails to build because atlas doesn't provide full blas.

svn path=/nixpkgs/trunk/; revision=33164
 2012-03-16 17:15:52 +00:00
Michael Raskin
7c0d7abdd7 Adding GAP discrete algebra system 
svn path=/nixpkgs/trunk/; revision=32908
 2012-03-08 18:23:47 +00:00
Yury G. Kudryashov
0210e20b5a svn merge ^/nixpkgs/trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=32713
 2012-03-01 07:04:39 +00:00
Michael Raskin
e6fa414b64 Update and fix Tulip 
svn path=/nixpkgs/trunk/; revision=32613
 2012-02-27 07:10:05 +00:00
Lluís Batlle i Rossell
b7f1724543 Gtkwave needs the xz libraries to build. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=32601
 2012-02-26 21:02:03 +00:00
Yury G. Kudryashov
313a029f16 svn merge ^/nixpkgs/trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=32396
 2012-02-19 11:16:24 +00:00
Yury G. Kudryashov
26f5bdfde1 xplanet: pass netpbm, edit meta 
svn path=/nixpkgs/trunk/; revision=32390
 2012-02-19 09:22:20 +00:00
Yury G. Kudryashov
045d0a3ea0 xplanet-1.2.2; builds with libpng-1.5 
svn path=/nixpkgs/trunk/; revision=32389
 2012-02-19 09:22:14 +00:00
Eelco Dolstra
9b4b40f053 * Caneda: fix the version number. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=32361
 2012-02-17 18:04:27 +00:00
Yury G. Kudryashov
e446dee4c3 Backport r32353 from stdenv-udpates 
* Get rid of Qt 4.6.  It doesn't compile with GCC 4.6.  There was only
  one application still using it (Caneda), but upgrading it allowed it
  to build with Qt 4.7.

Eelco, could you please fix the date in caneda version?

svn path=/nixpkgs/trunk/; revision=32359
 2012-02-17 17:40:58 +00:00
Eelco Dolstra
31ebc5d950 * Get rid of Qt 4.6. It doesn't compile with GCC 4.6. There was only 
one application still using it (Caneda), but upgrading it allowed it
  to build with Qt 4.7.

svn path=/nixpkgs/branches/stdenv-updates/; revision=32353
 2012-02-17 14:34:42 +00:00
Yury G. Kudryashov
5144a19987 svn merge ^/nixpkgs/trunk 
There were a few merge conflicts due to ensureDir->mkdir -p migration

svn path=/nixpkgs/branches/stdenv-updates/; revision=32174
 2012-02-10 10:24:30 +00:00
Peter Simons
1a7d345aab wxmaxima: updated to version 12.01.0 
svn path=/nixpkgs/trunk/; revision=32158
 2012-02-09 13:22:57 +00:00
Yury G. Kudryashov
215a07c1a9 svn merge ^/nixpkgs/trunk 
Merge conflicts:
* unzip (almost trivial)
* dvswitch (trivial)
* gmp (copied result of `git merge`)

The last item introduced gmp-5.0.3, thus full rebuild.
+ensureDir->mkdir -p in TeX packages was catched by git but not svn.

svn path=/nixpkgs/branches/stdenv-updates/; revision=32091
 2012-02-06 23:03:12 +00:00
Marco Maggesi
7c90b6a9bc Update HOL Light to rev 122. 
svn path=/nixpkgs/trunk/; revision=31956
 2012-02-01 14:37:50 +00:00
Eelco Dolstra
d4d7931a62 * Cleanup: remove obsolete references to ‘xz’, which is in stdenv now. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=31678
 2012-01-18 20:53:01 +00:00
Eelco Dolstra
c556a6ea46 * "ensureDir" -> "mkdir -p". "ensureDir" is a rather pointless 
function, so obsolete it.

svn path=/nixpkgs/branches/stdenv-updates/; revision=31644
 2012-01-18 20:16:00 +00:00
Yury G. Kudryashov
0c79434ccb svn merge ^/nixpkgs/trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=31567
 2012-01-14 21:34:37 +00:00
Yury G. Kudryashov
cced3d2b86 Fix compilation with qt-4.8 
- Explicitly depend on libX11 and mesa
- Include GL/glu.h

svn path=/nixpkgs/trunk/; revision=31552
 2012-01-14 18:03:41 +00:00
Yury G. Kudryashov
c2e38f32c0 avogadro: explicitly depend on pkg-config 
svn path=/nixpkgs/trunk/; revision=31541
 2012-01-14 18:03:01 +00:00
Lluís Batlle i Rossell
4238637b40 Adding GNU archimedes. 
svn path=/nixpkgs/trunk/; revision=31505
 2012-01-12 19:23:47 +00:00
Marco Maggesi
97d48a5426 Update HOL Light to rev 118 
svn path=/nixpkgs/trunk/; revision=31468
 2012-01-10 16:12:11 +00:00
Yury G. Kudryashov
9ee0a9df9b svn merge ^/nixpkgs/trunk 
A few trivial conflicts

svn path=/nixpkgs/branches/stdenv-updates/; revision=31434
 2012-01-08 16:01:12 +00:00
Yury G. Kudryashov
7e320a7043 State qt version (3/4) in packages, not in all-packages.nix 
svn path=/nixpkgs/trunk/; revision=31406
 2012-01-07 17:06:49 +00:00
Yury G. Kudryashov
394fd28e4e svn merge ^/nixpkgs/trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=31280
 2012-01-04 15:22:16 +00:00
Michael Raskin
07de46c2fa Update E prover 
svn path=/nixpkgs/trunk/; revision=31269
 2012-01-04 10:31:49 +00:00
Yury G. Kudryashov
2bca92e32d Merge trunk 
Conflicts:
1. cmake upgrade: use 2.8.7
2. openssl: left FreeBSD-asm patch.

svn path=/nixpkgs/branches/stdenv-updates/; revision=31245
 2012-01-03 17:25:24 +00:00
Yury G. Kudryashov
995d3d3e03 tulip-3.6.1 
svn path=/nixpkgs/trunk/; revision=31216
 2012-01-02 18:36:04 +00:00
Yury G. Kudryashov
08761e83fc Merge trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=31207
 2012-01-02 14:12:40 +00:00
Marco Maggesi
fd64bc5289 Oops! 
svn path=/nixpkgs/trunk/; revision=31126
 2011-12-28 12:49:29 +00:00
Marco Maggesi
ff3b0ed420 Update HOL Light to r116 
svn path=/nixpkgs/trunk/; revision=31125
 2011-12-28 12:45:59 +00:00
Yury G. Kudryashov
f77741e018 merge trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=31067
 2011-12-25 05:47:23 +00:00
Peter Simons
c7bed207d8 maxima: updated to version 5.26.0 
svn path=/nixpkgs/trunk/; revision=31042
 2011-12-22 12:30:19 +00:00
Lluís Batlle i Rossell
25bf67915d Updating kicad. 
svn path=/nixpkgs/trunk/; revision=30953
 2011-12-18 14:49:39 +00:00
Yury G. Kudryashov
a670a7aca1 merge trunk 
A few conflicts due to renames

svn path=/nixpkgs/branches/stdenv-updates/; revision=30947
 2011-12-16 22:57:21 +00:00
Marco Maggesi
74c3fc3085 Update HOL Light to rev 114 
svn path=/nixpkgs/trunk/; revision=30922
 2011-12-16 07:44:29 +00:00
Yury G. Kudryashov
b077940b3b svn merge https://nixos.org/repos/nix/nixpkgs/trunk 
No conflicts

svn path=/nixpkgs/branches/stdenv-updates/; revision=30916
 2011-12-15 19:16:38 +00:00
Michael Raskin
d5c702939c Update Golly 
svn path=/nixpkgs/trunk/; revision=30874
 2011-12-13 21:00:42 +00:00
Eelco Dolstra
eda3fd1730 * Sync with the trunk. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=30852
 2011-12-12 16:54:35 +00:00
Peter Simons
c86e037939 wxMaxima: updated to version 11.08.0 
svn path=/nixpkgs/trunk/; revision=30774
 2011-12-06 14:07:14 +00:00
Peter Simons
1382203c29 maxima: updated to version 5.25.1 
svn path=/nixpkgs/trunk/; revision=30773
 2011-12-06 14:07:11 +00:00
Lluís Batlle i Rossell
a9a03946df Updating gtkwave 
svn path=/nixpkgs/trunk/; revision=30738
 2011-12-05 10:44:53 +00:00
Marco Maggesi
bf394d80ec Update url for Isabelle2011 
svn path=/nixpkgs/trunk/; revision=30574
 2011-11-26 18:45:15 +00:00
Russell O'Connor
845f2a8658 adding camlp5 as a propogated build input to ulex 0.8 
matita and ulex must build against the same version of camlp5, so in an attempt to force them to always be the same I am adding a propgatedBuildInput to ulex.
Granted Matita still requires camlp5_traditional and this is less obvious in the matita file now, so I am not entirely sure this is the right design choice.

svn path=/nixpkgs/trunk/; revision=30552
 2011-11-24 19:43:03 +00:00
Marco Maggesi
fa47d66e22 Updated HOL Light to revision 112 
svn path=/nixpkgs/trunk/; revision=30369
 2011-11-10 15:35:53 +00:00
Peter Simons
368ac01473 synchronize with trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=30316
 2011-11-08 10:18:35 +00:00
Peter Simons
4098071398 gravit: cosmetic 
svn path=/nixpkgs/trunk/; revision=30314
 2011-11-08 10:01:14 +00:00
Peter Simons
cf77f59ce9 stellarium: updated to version 0.11.1 
svn path=/nixpkgs/trunk/; revision=30289
 2011-11-07 10:04:40 +00:00
Peter Simons
7edf0e8eaf synchronize with trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=29870
 2011-10-18 08:47:36 +00:00
Russell O'Connor
491c6e43b1 Package for picosat. 
svn path=/nixpkgs/trunk/; revision=29869
 2011-10-17 22:18:21 +00:00
Peter Simons
8dfef0f4a0 synchronize with trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=29851
 2011-10-14 22:06:50 +00:00
Lluís Batlle i Rossell
58e9385e70 Downgrading boinc to the last stable version. 
svn path=/nixpkgs/trunk/; revision=29808
 2011-10-13 08:58:45 +00:00
Peter Simons
e3984c2caf synchronize with trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=29739
 2011-10-10 17:01:17 +00:00
Lluís Batlle i Rossell
c67c7d49b0 Boinc wanted to be told to link to libX11 
svn path=/nixpkgs/trunk/; revision=29713
 2011-10-07 19:01:27 +00:00
Lluís Batlle i Rossell
80d397413d Boinc can even run, but only if placed in the proper (writeable) path. 
svn path=/nixpkgs/trunk/; revision=29712
 2011-10-07 19:01:19 +00:00
Lluís Batlle i Rossell
fefaa7a6ea Adding boinc. It installs. I don't know how to use it. 
svn path=/nixpkgs/trunk/; revision=29704
 2011-10-06 20:25:05 +00:00
Shea Levy
01df54f5cc Merge from trunk 
svn path=/nixpkgs/branches/stdenv-updates/; revision=29461
 2011-09-23 16:58:45 +00:00
Yury G. Kudryashov
9ee5230537 Move qt3/qt4 choice to .nix expressions 
svn path=/nixpkgs/trunk/; revision=29404
 2011-09-20 22:49:13 +00:00
Shea Levy
4d70ba6cc9 Merge from trunk up through r28790 
svn path=/nixpkgs/branches/stdenv-updates/; revision=28792
 2011-08-24 19:16:43 +00:00
Marco Maggesi
a9d2f34301 Update HOL Light to release 102 
svn path=/nixpkgs/trunk/; revision=28718
 2011-08-21 08:41:22 +00:00
Yury G. Kudryashov
a660093a4d Fix typo in URL 
svn path=/nixpkgs/trunk/; revision=28603
 2011-08-15 23:39:11 +00:00
Yury G. Kudryashov
0962beade0 Add avogadro 
svn path=/nixpkgs/trunk/; revision=28596
 2011-08-15 18:05:39 +00:00
Yury G. Kudryashov
48f1cd549f pari-gp-2.5.0 
svn path=/nixpkgs/trunk/; revision=28440
 2011-08-09 20:20:58 +00:00
Michael Raskin
946cd2431f Update LEO-II 
svn path=/nixpkgs/trunk/; revision=28180
 2011-08-05 18:22:40 +00:00
Michael Raskin
3e8a39ea61 Updating Maxima 
svn path=/nixpkgs/trunk/; revision=28152
 2011-08-04 15:13:15 +00:00
Peter Simons
c58754b390 stellarium: build this package on Linux only 
Stellarium is supposed to compile on mesaPlatforms, but unfortunately our qt47
expression doesn't support platforms other than Linux.

svn path=/nixpkgs/trunk/; revision=27798
 2011-07-15 12:47:20 +00:00
Peter Simons
fa99abdc89 gravit, stellarium: build software that depends on mesa only on mesa platforms 
svn path=/nixpkgs/trunk/; revision=27790
 2011-07-14 20:53:30 +00:00
Peter Simons
7c8871512d wxmaxima: ensure that wxMaxima will find Maxima even if it's not in $PATH 
svn path=/nixpkgs/trunk/; revision=27745
 2011-07-13 09:56:58 +00:00
Peter Simons
3cd02cd43d maxima: switch from clisp to sbcl, enable tk gui, and fix various impurities 
* Build maxima with sbcl for better performance.

 * Enable the regression test suite.

 * Configure $PATH at start-up so that maxima knows how to find sbcl,
   wish, rlwrap, and gnuplot.

 * Move installed documentation and Emacs lisp modules into standard
   locations.

 * Enable parallel building.

svn path=/nixpkgs/trunk/; revision=27743
 2011-07-13 09:13:32 +00:00
Peter Simons
8223f67929 Added stellarium 0.11.0. 
svn path=/nixpkgs/trunk/; revision=27697
 2011-07-10 20:17:44 +00:00
Peter Simons
3806050f60 gravit: enable support for lua 5.0.x 
The build doesn't work with the latest version 5.1.x. Upstream is going
to release an update to fix this soon.

svn path=/nixpkgs/trunk/; revision=27693
 2011-07-10 14:04:24 +00:00
Peter Simons
e7746a78ed gravit: added version 0.4.2 
svn path=/nixpkgs/trunk/; revision=27677
 2011-07-08 21:23:55 +00:00
Peter Simons
574eb09fa4 xplanet: move expression into new category "astronomy" 
svn path=/nixpkgs/trunk/; revision=27676
 2011-07-08 21:23:48 +00:00
Peter Simons
947610085d Added Eukleides, a geometry drawing language. 
svn path=/nixpkgs/trunk/; revision=27655
 2011-07-07 21:53:21 +00:00
Michael Raskin
b973f98afa Make tulip run without hassle. Unfortunately, some operations repeatably crash tulip even when built vs Qt4.6 
svn path=/nixpkgs/trunk/; revision=27570
 2011-07-01 09:53:11 +00:00
Michael Raskin
a4be010d31 Update Tulip 
svn path=/nixpkgs/trunk/; revision=27566
 2011-07-01 07:01:46 +00:00
Michael Raskin
d03599f8ce Adding TPTP 
svn path=/nixpkgs/trunk/; revision=27468
 2011-06-15 10:35:18 +00:00
Marco Maggesi
5b035e093d Update HOL Light to rev 92 
svn path=/nixpkgs/trunk/; revision=27459
 2011-06-14 17:09:19 +00:00
Marco Maggesi
1298fd8aba Update hol_light and cleanup: 
* Update hol_light to rev 90
* Remove dmtcp checkpoint (it doesn't work properly).
* General cleanup and simplification

svn path=/nixpkgs/trunk/; revision=27290
 2011-05-21 11:18:35 +00:00
Marco Maggesi
8e5beab31f Fix building of Isabelle2011 
svn path=/nixpkgs/trunk/; revision=27253
 2011-05-14 21:09:57 +00:00
Peter Simons
1c6d30e2ad wxmaxima: updated to version 11.04.0 
svn path=/nixpkgs/trunk/; revision=27171
 2011-05-06 07:35:22 +00:00
Peter Simons
b4e5853028 maxima: updated to version 5.24.0 
svn path=/nixpkgs/trunk/; revision=27170
 2011-05-06 07:35:15 +00:00
Eelco Dolstra
b61d3ab317 * Typo in attribute. This broke --meta --xml evaluation. 
svn path=/nixpkgs/trunk/; revision=27142
 2011-05-04 12:45:05 +00:00
Russell O'Connor
af59636bf5 adding ecm support to msieve. 
svn path=/nixpkgs/trunk/; revision=26931
 2011-04-23 12:36:36 +00:00
Russell O'Connor
699261d8df Adding ecm-6.2.3. 
svn path=/nixpkgs/trunk/; revision=26930
 2011-04-23 12:25:51 +00:00
Marco Maggesi
a041cad70a Update HOL Light to r89 
svn path=/nixpkgs/trunk/; revision=26916
 2011-04-21 14:39:29 +00:00
Russell O'Connor
3db6f63711 Package for msieve. 
This would be better if gmp-emc were packaged as well.

svn path=/nixpkgs/trunk/; revision=26915
 2011-04-21 12:48:07 +00:00
Michael Raskin
b4faf64bae Update Isabelle to an existing tarball... 
svn path=/nixpkgs/trunk/; revision=26903
 2011-04-20 12:24:34 +00:00
Russell O'Connor
bec1a9c44f update coq to 8.3pl1 
update ssreflect to 1.3pl1

svn path=/nixpkgs/trunk/; revision=26692
 2011-04-05 11:59:25 +00:00
Lluís Batlle i Rossell
df786c07dc Updating gtkwave 
svn path=/nixpkgs/trunk/; revision=26454
 2011-03-22 11:36:58 +00:00
Andres Löh
c2090d1be3 Added JAGS. 
svn path=/nixpkgs/trunk/; revision=26396
 2011-03-17 14:45:36 +00:00
Michael Raskin
662fa0a13b Fix updated maxima build 
svn path=/nixpkgs/trunk/; revision=25799
 2011-02-08 10:35:58 +00:00
Peter Simons
e0d871ba91 maxima: added buildInput 'texinfo' so that the reference documentation can be built 
svn path=/nixpkgs/trunk/; revision=25797
 2011-02-07 17:37:22 +00:00
Peter Simons
7795e5ec24 pkgs/applications/science/math/wxmaxima/default.nix: fixed the sha256 checksum 
svn path=/nixpkgs/trunk/; revision=25796
 2011-02-07 14:49:25 +00:00
Peter Simons
80c344d0cf pkgs/applications/science/math/maxima: fixed the sha256 checksum 
svn path=/nixpkgs/trunk/; revision=25795
 2011-02-07 14:47:42 +00:00
Peter Simons
0c3dcddbf3 pkgs/applications/science/math/wxmaxima: updated to version 0.8.7 
svn path=/nixpkgs/trunk/; revision=25787
 2011-02-07 11:35:42 +00:00
Peter Simons
a4cf1b8456 pkgs/applications/science/math/maxima: updated to version 5.23.2 
svn path=/nixpkgs/trunk/; revision=25786
 2011-02-07 11:35:35 +00:00
Marco Maggesi
436e1d72a7 * Coq: fix compilation of coqide (path to lablgkt) 
svn path=/nixpkgs/trunk/; revision=25360
 2011-01-03 13:49:15 +00:00
Michael Raskin
e55aa52856 Fix lablgtk reference 
svn path=/nixpkgs/trunk/; revision=25341
 2011-01-02 17:25:18 +00:00
Russell O'Connor
88ec92d14c Matita and its dependencies. 
svn path=/nixpkgs/trunk/; revision=25328
 2010-12-31 17:48:55 +00:00
Eelco Dolstra
aa6f43149a * Sync with the trunk. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=25308
 2010-12-28 16:42:00 +00:00
Marco Maggesi
51d6c8df91 * Handle variable createFindlibDestdir correctly in ocaml-findlib 
* Fix HOL Light derivation

svn path=/nixpkgs/trunk/; revision=25269
 2010-12-23 19:28:06 +00:00
Eelco Dolstra
c14382cb45 * Sync with the trunk. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=25225
 2010-12-21 15:14:33 +00:00
Marco Maggesi
e7accaf8d3 * Update camlp5 
svn path=/nixpkgs/trunk/; revision=25206
 2010-12-20 10:32:22 +00:00
Ludovic Courtès
e60ba9135a SimGrid 3.5. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=25180
 2010-12-17 17:48:12 +00:00
Lluís Batlle i Rossell
ee04ffcb55 Updating from trunk. I resolved simple conflicts. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=25061
 2010-12-11 12:47:00 +00:00
Michael Raskin
07dd3f074b Adding MiniSAT 
svn path=/nixpkgs/trunk/; revision=24984
 2010-12-05 19:54:27 +00:00
Michael Raskin
011d71dcb8 Adding PARI/GP 
svn path=/nixpkgs/trunk/; revision=24983
 2010-12-05 19:11:21 +00:00
Michael Raskin
7768fa0178 Fix installation layout 
svn path=/nixpkgs/trunk/; revision=24982
 2010-12-05 19:08:32 +00:00
Michael Raskin
5cb3f8b659 Missing Singular files 
svn path=/nixpkgs/trunk/; revision=24981
 2010-12-05 18:37:47 +00:00
Michael Raskin
6b8abaa29e Adding OpenSMT 
svn path=/nixpkgs/trunk/; revision=24978
 2010-12-05 18:22:14 +00:00
Michael Raskin
a9f70d542d Adding CVC3 satisfiability modulo theory (SMT) solver 
svn path=/nixpkgs/trunk/; revision=24975
 2010-12-05 17:28:41 +00:00
Michael Raskin
44ac8c5ea1 Adding iProver 
svn path=/nixpkgs/trunk/; revision=24969
 2010-12-04 18:39:44 +00:00
Michael Raskin
86e44e72bf Adding SPASS 
svn path=/nixpkgs/trunk/; revision=24967
 2010-12-04 11:43:01 +00:00
Michael Raskin
64ed7e705d Adding Satallax prover 
svn path=/nixpkgs/trunk/; revision=24963
 2010-12-03 11:26:34 +00:00
Michael Raskin
c32bd62956 Adding LEO2 automated higher-order prover 
svn path=/nixpkgs/trunk/; revision=24952
 2010-12-01 21:29:42 +00:00
Michael Raskin
373fabf1c0 Fix settings patch for Isabelle 
svn path=/nixpkgs/trunk/; revision=24951
 2010-12-01 21:29:20 +00:00
Michael Raskin
b89881d098 Update Isabelle 
svn path=/nixpkgs/trunk/; revision=24950
 2010-12-01 21:25:21 +00:00
Lluís Batlle i Rossell
d71ad68d43 Fixing the verilog URL (contributed by Antonio Vargas) 
svn path=/nixpkgs/trunk/; revision=24935
 2010-11-30 11:24:12 +00:00
Lluís Batlle i Rossell
ab6627ac0e Fix for the verilog package, from Antonio Vargas Gonzalez 
svn path=/nixpkgs/trunk/; revision=24934
 2010-11-30 11:23:36 +00:00
Lluís Batlle i Rossell
0e4c970d11 Updating from trunk - I hope I fixed the conflict around gettext - I left it as 
it was before merging.


svn path=/nixpkgs/branches/stdenv-updates/; revision=24876
 2010-11-26 14:40:39 +00:00
Lluís Batlle i Rossell
4018d18e96 Committing patch adding verilog from Antonio Vargas Gonzalez 
From his original, I adapted some spacing, and removed the release.nix reference
(superfluous having set meta.platforms)

svn path=/nixpkgs/trunk/; revision=24860
 2010-11-25 22:01:14 +00:00
Michael Raskin
3c452363ce Use a patch to fix make 3.82 build of Coq 
svn path=/nixpkgs/branches/stdenv-updates/; revision=24817
 2010-11-23 05:54:58 +00:00
Michael Raskin
9d124b1c70 Fix DrGeo build 
svn path=/nixpkgs/branches/stdenv-updates/; revision=24762
 2010-11-19 04:07:34 +00:00
Lluís Batlle i Rossell
8746de3ae8 Updating from trunk. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=24674
 2010-11-11 22:18:14 +00:00
Peter Simons
a09b681e3e pkgs/applications/science/math/maxima: fixed location of "info" and "man" directories 
svn path=/nixpkgs/trunk/; revision=24605
 2010-11-05 14:35:37 +00:00
Marco Maggesi
0430167083 Update Coq 
svn path=/nixpkgs/trunk/; revision=24597
 2010-11-04 11:24:27 +00:00
Marco Maggesi
078587a846 Update HOL Light 
svn path=/nixpkgs/trunk/; revision=24591
 2010-11-03 22:20:05 +00:00
Lluís Batlle i Rossell
f4f84af4ab Updating from trunk. I only had to take away the usual stdenv2 in 
all-packages.nix


svn path=/nixpkgs/branches/stdenv-updates/; revision=24553
 2010-10-31 19:30:31 +00:00
Lluís Batlle i Rossell
0cb7f90cac Adding caneda 
svn path=/nixpkgs/trunk/; revision=24450
 2010-10-24 17:01:09 +00:00
Lluís Batlle i Rossell
227c632d18 Adding qucs 
svn path=/nixpkgs/trunk/; revision=24449
 2010-10-24 17:00:57 +00:00
Lluís Batlle i Rossell
2c5de61327 Updating from trunk. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=23840
 2010-09-17 19:10:21 +00:00
Marco Maggesi
4e5db40581 Update HOL Light to version 20100820 (rev57 on google code). 
Also replace the monolitic derivation hol_light_binaries with smaller
derivations.  Now the installation works as follows:

# Install the base system and a script "start_hol_light"
$ nix-env -i hol_light_sources hol_light

# Install a checkpointed executable with the core library preloaded
$ nix-env -i hol_light_core_dmtcp

# Install HOL Light binaries preloaded with other specific libraries:
$ nix-env -i hol_light_multivariate_dmtcp
$ nix-env -i hol_light_complex_dmtcp
$ nix-env -i hol_light_sosa_dmtcp
$ nix-env -i hol_light_card_dmtcp


svn path=/nixpkgs/trunk/; revision=23815
 2010-09-15 21:41:18 +00:00
Marco Maggesi
44f2d4439f Change the name of the coq derivation to coq-devel-8.3pre1 
i.e., remove the version from the name.  Nix has its own mechanism to
prevent a packages to be upgraded.  Instead we distinguish development
version (coq-dev-VERSION) from stable versions (coq-VERSION).

Also remove derivation for coq-8.3-beta0-1 which is now superseded by
coq-devel-8.3pre1.


svn path=/nixpkgs/trunk/; revision=23813
 2010-09-15 19:39:48 +00:00
Marco Maggesi
8ab6f9861c Add coq-8.3rc1 
Note: In this version we introduce a new schema for the name of the coq
derivations where the coq version is included in the name (i.e.,
"coq8.3-8.3pre1" instead of "coq-8.3pre1").  The reason for this is that often
coq releases introduce several incompatibilities.  Thus I argue that, in
general, users do not want nix-env to upgrade automatically form one release to
another.  Also version string "8.3pre1" is used instead of "8.3-rc1" to trigger
the nix mechanism for versions comparison.


svn path=/nixpkgs/trunk/; revision=23803
 2010-09-14 21:15:58 +00:00
Marco Maggesi
df21c86e08 Improve hol_light: 
*   Upgrade hol_light to the latest svn version on google code (r57).

  *   Improve and semplify the mechanism for the generation of checkpointed binaries.

  *   Make hol to work with camlp5 and thus with recent version of ocaml (>=3.10, <=3.11).

  *   Remove ocaml_with_sources which is not needed anymore.

svn path=/nixpkgs/trunk/; revision=23685
 2010-09-08 13:07:45 +00:00
Lluís Batlle i Rossell
6acc186e0e Fixing the catalan locale for kicad (it had the wrong encoding written) 
svn path=/nixpkgs/trunk/; revision=23554
 2010-08-31 09:24:49 +00:00
Lluís Batlle i Rossell
aa86a0c4a2 Fixing kicad so it not only builds, but it also runs and finds the library of components. 
svn path=/nixpkgs/trunk/; revision=23552
 2010-08-31 08:19:28 +00:00
Lluís Batlle i Rossell
cca1cae042 Updating from trunk. I had to do some changes to make it fit. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=23500
 2010-08-29 11:09:23 +00:00
Peter Simons
49c437a31e pkgs/applications/science/math/maxima: use a correct license tag 
Thanks, Ludovic.

svn path=/nixpkgs/trunk/; revision=23466
 2010-08-26 17:57:14 +00:00
Peter Simons
098b763939 pkgs/applications/science/logic/prover9: fixed trivial syntax error 
svn path=/nixpkgs/trunk/; revision=23453
 2010-08-26 12:06:05 +00:00
Peter Simons
2c4c301c9b pkgs/applications/science/math/wxmaxima: updated to version 0.8.6 
svn path=/nixpkgs/trunk/; revision=23451
 2010-08-26 11:53:17 +00:00
Peter Simons
83ae38861e pkgs/applications/science/math/maxima: added license tag 
svn path=/nixpkgs/trunk/; revision=23450
 2010-08-26 11:51:10 +00:00
Peter Simons
88b126b9ca pkgs/applications/science/math/maxima: build this package on Unix'ish platforms, but not on Windows 
svn path=/nixpkgs/trunk/; revision=23449
 2010-08-26 11:49:54 +00:00
Peter Simons
24e71fa8fc pkgs/applications/science/math/maxima: updated to version 5.22.1 
svn path=/nixpkgs/trunk/; revision=23448
 2010-08-26 11:44:43 +00:00
Peter Simons
403938b004 pkgs/applications/science/logic/prover9: updated homepage and license 
svn path=/nixpkgs/trunk/; revision=23447
 2010-08-26 11:42:41 +00:00
Peter Simons
340d4a6ddd pkgs/applications/science/logic/prover9: initial version 
svn path=/nixpkgs/trunk/; revision=23446
 2010-08-26 11:37:05 +00:00
Michael Raskin
4f6c18925d Fix installation for updated E prover release 
svn path=/nixpkgs/trunk/; revision=23435
 2010-08-26 04:34:20 +00:00
Michael Raskin
05c7e81eaa Move E prover to applications/science/logic 
svn path=/nixpkgs/trunk/; revision=23434
 2010-08-25 22:38:11 +00:00
Peter Simons
970b3402e9 pkgs/applications/science/logic/hol: initial version 
svn path=/nixpkgs/trunk/; revision=23430
 2010-08-25 19:50:24 +00:00
Lluís Batlle i Rossell
689b834242 Updating gtkwave 
svn path=/nixpkgs/trunk/; revision=23391
 2010-08-24 10:00:19 +00:00
Lluís Batlle i Rossell
397a10aba2 Adding Kicad 
svn path=/nixpkgs/trunk/; revision=23352
 2010-08-22 12:09:47 +00:00
Lluís Batlle i Rossell
f16353b6f2 Updated from trunk. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=23275
 2010-08-20 13:41:12 +00:00
Lluís Batlle i Rossell
3a3867869a Adding tetgen 
svn path=/nixpkgs/trunk/; revision=23138
 2010-08-12 10:59:05 +00:00
Lluís Batlle i Rossell
039b660b5b Making lynx, yacas and alsa-lib crossbuild 
svn path=/nixpkgs/branches/stdenv-updates/; revision=23130
 2010-08-11 20:11:12 +00:00
Lluís Batlle i Rossell
456d3f41ae Adding a yacas needed patch for it to build 
svn path=/nixpkgs/trunk/; revision=23077
 2010-08-09 22:42:48 +00:00
Lluís Batlle i Rossell
9cba74c95a Adding 'yacas', a CAS implemented in C++. 
svn path=/nixpkgs/trunk/; revision=23074
 2010-08-09 21:58:21 +00:00
Marco Maggesi
c0f343b752 Update Coq to version 8.2pl2 (patch by roconnor) 
svn path=/nixpkgs/trunk/; revision=22971
 2010-08-05 18:44:42 +00:00
Eelco Dolstra
cc84ac9e84 svn path=/nixpkgs/trunk/; revision=22880 2010-08-02 16:01:55 +00:00
Eelco Dolstra
f1598a8941 * More cleanup. 
svn path=/nixpkgs/trunk/; revision=22798
 2010-07-28 18:01:17 +00:00
Ludovic Courtès
35cbabdab4 ViTE from SVN. 
svn path=/nixpkgs/trunk/; revision=22696
 2010-07-22 09:01:42 +00:00
Michael Raskin
b1eb6c96a8 Update Tulip. Unicode support should be available now. 
svn path=/nixpkgs/trunk/; revision=22484
 2010-07-06 07:25:07 +00:00
Michael Raskin
a10b9e1d3a Specifying golly license 
svn path=/nixpkgs/trunk/; revision=22393
 2010-06-23 10:02:44 +00:00
Michael Raskin
558251da4a Adding golly (a cellular automata program) 
svn path=/nixpkgs/trunk/; revision=22391
 2010-06-23 07:41:17 +00:00
Lluís Batlle i Rossell
99a94a777b Updating ngspice 
svn path=/nixpkgs/trunk/; revision=22364
 2010-06-21 20:34:23 +00:00
Ludovic Courtès
d5c60020df SimGrid: Enable tracing. 
svn path=/nixpkgs/trunk/; revision=22314
 2010-06-17 17:06:51 +00:00
Ludovic Courtès
ff57c0e21e Move SimGrid under `science/misc'. 
svn path=/nixpkgs/trunk/; revision=22312
 2010-06-17 17:06:40 +00:00
Ludovic Courtès
3190f9ed6e Add Visual Trace Explorer (ViTE). 
svn path=/nixpkgs/trunk/; revision=22311
 2010-06-17 17:06:09 +00:00
Ludovic Courtès
5be3acda2d Add Tulip, a graph visualization framework. 
svn path=/nixpkgs/trunk/; revision=22264
 2010-06-14 18:30:35 +00:00
Lluís Batlle i Rossell
393ab9b252 Fixing an ortography error in the xoscope description. 
svn path=/nixpkgs/trunk/; revision=22245
 2010-06-13 19:32:32 +00:00
Lluís Batlle i Rossell
b1946eec91 Adding xoscope (oscilloscope for the sound card input, among others) 
svn path=/nixpkgs/trunk/; revision=22242
 2010-06-13 10:01:16 +00:00
Lluís Batlle i Rossell
02ea8daffa Making gtkwave more featured, adding more buildInputs. 
svn path=/nixpkgs/trunk/; revision=22133
 2010-06-03 15:37:02 +00:00
Lluís Batlle i Rossell
8fafef2b8f Updating gtkwave 
svn path=/nixpkgs/trunk/; revision=22132
 2010-06-03 15:36:57 +00:00
Peter Simons
1295493b18 pkgs/applications/science/logic/coq: install coqide libraries 
Patch courtesy of Russell O'Connor.

svn path=/nixpkgs/trunk/; revision=21838
 2010-05-18 13:40:19 +00:00
Marco Maggesi
afbb01c90d Add expression for Coq 8.3 beta 
svn path=/nixpkgs/trunk/; revision=21734
 2010-05-11 20:14:46 +00:00
Peter Simons
fd8c6ae43d Moved 'maintainers' attribute into the meta section of the expression. 
I've also set the 'platforms' attribute to ensure that Hydra actually
builds these packages. Thanks to Lluís Batlle i Rossell for pointing out
these mistakes.

svn path=/nixpkgs/trunk/; revision=21688
 2010-05-09 16:01:44 +00:00
Peter Simons
6b42129c3a pkgs/applications/science/math/wxmaxima: updated to version 0.8.5 
svn path=/nixpkgs/trunk/; revision=21603
 2010-05-05 10:26:15 +00:00
Peter Simons
2dd70d3ffb pkgs/applications/science/math/maxima: updated to version 5.21.1 
svn path=/nixpkgs/trunk/; revision=21602
 2010-05-05 10:26:11 +00:00
Peter Simons
425d964e7d pkgs/applications/science/math/maxima: added myself as a maintainer 
svn path=/nixpkgs/trunk/; revision=21028
 2010-04-12 11:21:38 +00:00
Lluís Batlle i Rossell
d533e31357 Updating gtkwave 
svn path=/nixpkgs/trunk/; revision=20825
 2010-03-25 15:07:53 +00:00
Marco Maggesi
513d653d68 Add HOL Light and its dependencies. 
Add pkgs/applications/science/logic/hol_light
and pkgs/applications/science/emacs-modes/hol_light

Some functionalities of HOL Light requires the compiled sources of
OCaml.  For now we provide a new package ocaml_with_sources.  After
this shuold be merged with the current version of OCaml already
present in nixpkgs.


svn path=/nixpkgs/trunk/; revision=20008
 2010-02-15 11:00:02 +00:00
Eelco Dolstra
fae05e6328 * Build on GCC 4.4. 
svn path=/nixpkgs/branches/stdenv-updates/; revision=19677
 2010-01-26 15:27:18 +00:00
Lluís Batlle i Rossell
13733f6f94 Updating gtkwave 
svn path=/nixpkgs/trunk/; revision=19591
 2010-01-21 09:49:06 +00:00
Peter Simons
a5b5690be7 pkgs/applications/science/math/maxima: updated to version 5.20.1 
svn path=/nixpkgs/trunk/; revision=19380
 2010-01-12 21:39:23 +00:00
Lluís Batlle i Rossell
4fc8cd8d35 Adding gtkwave, to view waves generated by ghdl. 
svn path=/nixpkgs/trunk/; revision=19065
 2009-12-21 10:35:50 +00:00
Michael Raskin
1497cacb6e adding libxcursor dependency 
svn path=/nixpkgs/trunk/; revision=18930
 2009-12-14 00:14:55 +00:00
Michael Raskin
a996d01af9 Adding content. Unfortunately, currently segfaults 
svn path=/nixpkgs/trunk/; revision=18927
 2009-12-14 00:00:11 +00:00
Marco Maggesi
98aaa4421c Add expression for Isabelle2009 
svn path=/nixpkgs/trunk/; revision=18905
 2009-12-11 17:00:52 +00:00
Marco Maggesi
c713b0ed67 Preliminary version of package ssreflect 
Add expression for ssreflect, an extension to the Coq Proof Assistant.
Still has some clitches (see TODO in default.nix) but is usable anyway.


svn path=/nixpkgs/trunk/; revision=18145
 2009-11-05 15:08:12 +00:00
Marco Maggesi
a0207b3dc7 Updated Coq to version 8.2pl1 
svn path=/nixpkgs/trunk/; revision=18069
 2009-11-02 11:44:27 +00:00
Peter Simons
7fa0d73966 pkgs/applications/science/math/wxmaxima/default.nix: cosmetic changes 
Note that wxMaxima does *not* have a proper store path to maxima built
into the binary. It relies on $PATH, /etc/wxMaxima.conf, or ~/.wxMaxima
to find the binary.

svn path=/nixpkgs/trunk/; revision=18020
 2009-10-29 12:53:22 +00:00
Peter Simons
96a32cffe2 Added wxMaxima version 0.8.3. 
svn path=/nixpkgs/trunk/; revision=18015
 2009-10-29 11:57:58 +00:00
Peter Simons
5dd3252557 Updated Maxima to version 5.19.2. 
svn path=/nixpkgs/trunk/; revision=18014
 2009-10-29 11:57:45 +00:00
Sander van der Burg
cdfc752210 Added XPlanet support to kdeedu-4.3.1, not that is an essential feature but it looks cool :-) 
svn path=/nixpkgs/trunk/; revision=17054
 2009-09-11 14:06:51 +00:00
Marc Weber
f7f938a1d1 big breaking change: renaming lib.getAttr to lib.attrByPath 
getAttr was ambiguous. It's also a builtin function

fix

svn path=/nixpkgs/trunk/; revision=15692
 2009-05-24 10:57:41 +00:00
Marc Weber
52647ea3b0 FullDepEntry -> fullDepEntry, PackEntry -> packEntry 
svn path=/nixpkgs/trunk/; revision=15662
 2009-05-19 23:25:58 +00:00
Eelco Dolstra
eeed10ba8e * g77 -> gfortran throughout. Got rid of the separate 
expressions/builders for Fortran.  Tested by building Octave with
  gfortran 4.3.

svn path=/nixpkgs/branches/stdenv-updates/; revision=14978
 2009-04-09 15:24:33 +00:00
Pjotr Prins
17e2100b03 Updated PAML package to 4.2a 
svn path=/nixpkgs/trunk/; revision=14262
 2009-02-26 15:22:13 +00:00
Pjotr Prins
7ba68d934f Added note on package status for 64 bits 
svn path=/nixpkgs/trunk/; revision=14090
 2009-02-17 08:23:21 +00:00
Pjotr Prins
387a7a85d6 Updated NCBI tools to latest version 
svn path=/nixpkgs/trunk/; revision=14087
 2009-02-16 16:38:55 +00:00
Lluís Batlle i Rossell
264a6c709a Adding alliance 5.0 
svn path=/nixpkgs/trunk/; revision=14008
 2009-02-08 16:28:31 +00:00
Marc Weber
7cd7c4cffb maxima version bump to 5.17.0 
svn path=/nixpkgs/trunk/; revision=13703
 2009-01-04 20:18:10 +00:00
Pjotr Prins
3ce5cba9c7 Added pkgMaintainer info to these 'biology' section packages. 
svn path=/nixpkgs/trunk/; revision=12987
 2008-10-07 15:12:06 +00:00
Pjotr Prins
b3aa5d6bfc Added meta.pkgMaintainer to biology packages - a claim to fame, or 
you know who to blame!

svn path=/nixpkgs/trunk/; revision=12986
 2008-10-07 15:12:01 +00:00
Pjotr Prins
4ab58fc7f3 Squashed commit of the following: 
commit 74c0e9192e17d9dfce50f811fdb7e82a2785134e
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:33:39 2008 +0200

    Merge

commit ad91fb07a47226ed9e99f2dcb55b69ea0e70aa84
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:23:20 2008 +0200

    openmotif: added some comments on license and download

commit 68a552975f5c7e0964c7c9625e08de0864757255
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:10:49 2008 +0200

    Match parameters so arb starts compiling against openmotif

commit 16c52fb4071193f89acf6f7f53cfeff322285555
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:04:06 2008 +0200

    Added openmotif package

commit 75c4bba418f16859e99e97f48785e27ad87e99f5
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 15:20:55 2008 +0200

    Adding openmotif

commit 83a847d194b007e2ef856f2a5ad7c49939b6cf8c
Merge: 52918f1... 5ba4f06...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 14:15:05 2008 +0200

    Merge branch 'syncsvn'

    Conflicts:
    	pkgs/top-level/all-packages.nix

commit 52918f1f3af55429cc80c99d695e4a8d8b7869b0
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 18:31:06 2008 +0200

    arb: Removed xfig as dependency (will add later)
    arb: Don't recurse chmod settings of shared dir

commit c283733782dcbf0dcd88710e83f3eededf8f0866
Merge: e434cdf... a51773a...
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 17:09:42 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit a51773a3d4295d7ce16e6a7e983ded814180e30a
Merge: 290ae0b... 241012c...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 16:54:14 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit e434cdf9b9acefab4f54e18204ff16af179c442d
Merge: ef57566... 241012c...
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 16:12:27 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit 241012cae194d0f770be2224b5bb18b66e3ae0f0
Author: Pj <wrk@bio03.(none)>
Date:   Mon Oct 6 16:11:11 2008 +0200

    Added older version of lesstif for arb

commit 290ae0b802285a8dda41b3c5730e53239d73b47c
Merge: dfdf7fe... 53b6ceb...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 15:20:17 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit dfdf7fe8ac9599ec372bdb83630a236f227ad7d5
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 15:15:04 2008 +0200

    Fixed missing parameters for arb - and added kernelHeaders_2.6.18

commit ef57566834eb786cdcb57a799b7d1cb284eee389
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 15:06:26 2008 +0200

    Changed arb permissions and priority

svn path=/nixpkgs/trunk/; revision=12985
 2008-10-07 14:35:11 +00:00
Pjotr Prins
bd0b84b3c7 Changed arb permissions and priority 
svn path=/nixpkgs/trunk/; revision=12969
 2008-10-06 13:17:56 +00:00
Pjotr Prins
6d70506401 Small fixes to ARB 
Included older kernel headers

svn path=/nixpkgs/trunk/; revision=12961
 2008-10-05 10:56:47 +00:00
Pjotr Prins
c38a72a573 Added more dependencies for ARB 
svn path=/nixpkgs/trunk/; revision=12959
 2008-10-05 10:56:44 +00:00
Pjotr Prins
fcb2efbc92 Added shared dir and updated reference to ARB 
svn path=/nixpkgs/trunk/; revision=12958
 2008-10-05 10:56:23 +00:00
Pjotr Prins
29d6189e8b The arb package (biology) 
svn path=/nixpkgs/trunk/; revision=12956
 2008-10-05 09:03:58 +00:00
Pjotr Prins
034f28e268 Biology package 
svn path=/nixpkgs/trunk/; revision=12953
 2008-10-05 09:00:19 +00:00
Pjotr Prins
df1e47822b Lower priority of this package because of zlib.so conflict 
svn path=/nixpkgs/trunk/; revision=12945
 2008-10-05 08:42:40 +00:00
Pjotr Prins
c09e1e540c Introduced pal2nal package 
svn path=/nixpkgs/trunk/; revision=12896
 2008-09-19 13:39:17 +00:00
Pjotr Prins
301f2e3094 Bumped PAML version 
svn path=/nixpkgs/trunk/; revision=12895
 2008-09-19 13:36:35 +00:00
Nicolas Pierron
6c4a6e83b4 Move maxima close to scilab. (applications/science/math) 
Requested by Michael Raskin.

svn path=/nixpkgs/trunk/; revision=12812
 2008-09-05 17:21:45 +00:00
Nicolas Pierron
517a120ff8 Add scilab-4.1.2 
svn path=/nixpkgs/trunk/; revision=12810
 2008-09-05 17:12:04 +00:00
Marc Weber
2d354aa6f1 added ngspice 
svn path=/nixpkgs/trunk/; revision=12686
 2008-08-21 20:43:53 +00:00
Pjotr Prins
2a845ebb7a Removing clustalw2 package - may come back later 
svn path=/nixpkgs/trunk/; revision=12400
 2008-07-23 08:37:00 +00:00
Pjotr Prins
0014ffcbae Updated emboss package to 6.0.1 
svn path=/nixpkgs/trunk/; revision=12399
 2008-07-23 08:22:23 +00:00
Michael Raskin
5ba53d93b5 Added DrGeo 
svn path=/nixpkgs/trunk/; revision=12204
 2008-06-27 19:15:01 +00:00
Pjotr Prins
0e751ebadc Long description 
svn path=/nixpkgs/trunk/; revision=12005
 2008-06-07 06:41:18 +00:00
Pjotr Prins
289da88ccc Moved NCBI-tools to applications 
svn path=/nixpkgs/trunk/; revision=12004
 2008-06-07 06:34:02 +00:00
Pjotr Prins
f9e018c80d biology/paml added 
svn path=/nixpkgs/trunk/; revision=11997
 2008-06-06 08:23:49 +00:00
Pjotr Prins
62c9176206 Added emboss 
svn path=/nixpkgs/trunk/; revision=11993
 2008-06-05 17:14:33 +00:00
Pjotr Prins
5866a8b101 tabs2spaces of .nix file 
svn path=/nixpkgs/trunk/; revision=11992
 2008-06-05 16:58:41 +00:00
Pjotr Prins
13463a6f01 MrBayes - a biology package for phylogeny 
svn path=/nixpkgs/trunk/; revision=11986
 2008-06-05 13:35:45 +00:00
Andres Löh
12ca68d114 Added a preliminary expression for Coq (no IDE support yet). 
svn path=/nixpkgs/trunk/; revision=11983
 2008-06-04 15:10:05 +00:00
Pjotr Prins
849e3eb21c biology/clustalw2 package 
svn path=/nixpkgs/trunk/; revision=11631
 2008-04-15 09:32:12 +00:00