MrBayes - a biology package for phylogeny
svn path=/nixpkgs/trunk/; revision=11986
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pkgs/applications/science/biology/mrbayes/builder.sh
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pkgs/applications/science/biology/mrbayes/builder.sh
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# builder for mrbayes - note: only builds on Unix
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source $stdenv/setup
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tar xvfz $src
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cd mrbayes-*
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make
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mkdir -p $out/bin
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cp -v mb $out/bin
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pkgs/applications/science/biology/mrbayes/default.nix
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pkgs/applications/science/biology/mrbayes/default.nix
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{stdenv, fetchurl, readline}:
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stdenv.mkDerivation rec {
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# FIXME: replace Makefile so we can build MPI & MAC support
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name = "mrbayes-3.1.2";
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src = fetchurl {
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url = "mirror://sourceforge/mrbayes/${name}.tar.gz";
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sha256 = "1x7j8ca5wjrqrxmcpvd375ydm3s2pbkzykv8xfhg1jc037g560n6";
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};
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builder = ./builder.sh;
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buildInputs = [readline];
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meta = {
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description = "Bayesian Inference of Phylogeny";
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longDescription = ''Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.'';
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license = "GPL2";
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homepage = http://mrbayes.csit.fsu.edu/;
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};
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}
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