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4396 Commits

Author SHA1 Message Date
Evils
9be551c1d8 kicad: 5.1.8 -> 5.1.9 2021-01-07 16:17:41 -05:00
Evils
86e29a0b72 kicad: fix update.sh multiple tag reply handling 
and fix tabs in update.sh
 2021-01-07 16:17:41 -05:00
Sandro
7ae17783a7
Merge pull request #108432 from jbedo/fastp 
fastp: init 0.20.1
 2021-01-07 21:44:33 +01:00
github-actions[bot]
5c072a088d
Merge master into staging-next 2021-01-07 18:40:50 +00:00
Sandro
ec56bf6ede
Merge pull request #106456 from eduardosm/diylc 2021-01-07 17:24:42 +01:00
Jan Tojnar
f19eb635b4
Merge branch 'master' into staging-next 
b04fc593e7 seems to have accidentally changed mkDerivation function for dfilemanager and solarus-quest-editor so I have reverted that here.
 2021-01-07 13:04:31 +01:00
Eduardo Sánchez Muñoz
0d84b3f540 diylc: init at 4.15.1 2021-01-07 12:53:35 +01:00
Justin Bedo
bdf3d727ca
fastp: init 0.20.1 2021-01-07 18:24:19 +11:00
Devon Richards
7a16349789
lean: 3.23.0 -> 3.24.0 
We have to update to be able to use the current version of mathlib.
 2021-01-06 21:38:04 -06:00
Сухарик
4746e1717f
sympy: 1.6.2 -> 1.7.1 (#107663) 
* sympy: 1.6.2 -> 1.7.1

* sage: adapt tests to sympy 1.7

Co-authored-by: Mauricio Collares <mauricio@collares.org>
 2021-01-06 17:10:30 +00:00
Sandro
0af4d59732
Merge pull request #108437 from jbedo/varscan 
varscan: 2.4.2 -> 2.4.4
 2021-01-06 00:19:30 +01:00
Sandro
31d6b1cd06
Merge pull request #108435 from jbedo/last 
last: 1145 -> 1170
 2021-01-06 00:18:41 +01:00
Guillaume Girol
f3e84c4d42
Merge pull request #107416 from hjones2199/phd2wrap 
phd2: add GApps wrapper to fix breakage on non-nixos wayland systems
 2021-01-05 20:09:24 +00:00
John Ericson
4eb13669a0 ott: Don't also install emacs mode 
There is now a separate package for that.
 2021-01-05 14:41:52 -05:00
Anderson Torres
0972bbc12d
Merge pull request #108445 from AndersonTorres/updates 
Misc updates
 2021-01-05 11:54:15 -03:00
AndersonTorres
e8183d4687 magic-vlsi: 8.3.80 -> 8.3.109 
Also, add myself to maintainers list.
 2021-01-05 10:49:00 -03:00
Sandro
f53c431645
Merge pull request #108379 from SuperSandro2000/cleanups 2021-01-05 02:19:24 +01:00
Justin Bedo
56dd3fa172
varscan: 2.4.2 -> 2.4.4 2021-01-05 10:55:28 +11:00
Justin Bedo
62432c855f
last: 1145 -> 1170 2021-01-05 10:29:31 +11:00
Frederik Rietdijk
b20838eb4a Merge staging-next into staging 2021-01-04 20:51:32 +01:00
Pavol Rusnak
bf77245202
Merge pull request #108219 from prusnak/viennarna 
ViennaRNA: init at 2.4.17
 2021-01-04 18:04:56 +01:00
markuskowa
d480c86858
Merge pull request #107223 from markuskowa/upd-qe 
quantum-espresso: 6.5 -> 6.6
 2021-01-04 14:33:37 +01:00
Sandro
6ac4c2d1f6
Merge pull request #107962 from flyfloh/colmap-36 2021-01-04 14:25:21 +01:00
Sandro Jäckel
a8d360eca3
raxml: cleanup 2021-01-04 11:02:16 +01:00
github-actions[bot]
07165c7226
Merge staging-next into staging 2021-01-03 18:38:32 +00:00
John Ericson
b03fdcc7f9
Merge pull request #108300 from siraben/parallel-cmake 
treewide: remove enableParallelBuilding = true if using cmake
 2021-01-03 13:22:09 -05:00
Pavol Rusnak
77364ac7c0
Merge pull request #108251 from prusnak/bowtie2 
bowtie2: 2.3.5.1 -> 2.4.2
 2021-01-03 13:47:45 +01:00
github-actions[bot]
0649757570
Merge staging-next into staging 2021-01-03 12:24:59 +00:00
Ben Siraphob
3ae5e6ce03 treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
Sandro
6ae069c990
Merge pull request #108249 from prusnak/bowtie 
bowtie: init at at 1.3.0
 2021-01-03 10:03:24 +01:00
zowoq
fb2311d430 Merge staging-next into staging 2021-01-03 16:33:28 +10:00
Pavol Rusnak
9139eb5aee bowtie2: 2.3.5.1 -> 2.4.2 2021-01-02 22:18:32 +01:00
Pavol Rusnak
03b99f0721 bowtie: init at at 1.3.0 2021-01-02 19:46:59 +01:00
Maximilian Bosch
097cd34db0
Merge pull request #108126 from Ma27/cleanup-maintained-pkgs 
treewide: remove maintainership of `ma27` from a few packages
 2021-01-02 18:58:26 +01:00
Pavol Rusnak
cb0b77e2f5 ViennaRNA: init at 2.4.17 2021-01-02 18:53:31 +01:00
Sandro
84c3e129cc
Merge pull request #108190 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.0.10 -> 4.0.11
 2021-01-02 09:55:16 +01:00
Ben Wolsieffer
92e3304792 qgroundcontrol: 4.0.10 -> 4.0.11 2021-01-01 22:22:20 -05:00
freezeboy
9fd99b5a32 opensmt: 20101017 -> 2.0.1 2021-01-01 23:38:04 +01:00
Sandro
0336dda91b
Merge pull request #108113 from r-ryantm/auto-update/nanovna-saver 
nanovna-saver: 0.3.7 -> 0.3.8
 2021-01-01 21:10:11 +01:00
Maximilian Bosch
e7d1be840c
treewide: remove maintainership of ma27 from a few packages 
Those are packages I don't use anymore for a longer time and I therefore
don't think that listing me as maintainer is a good idea. If those
should be removed now, I'd be fine with that.

SuperSandro2000 will take care of a few packages[1].

[1] https://github.com/NixOS/nixpkgs/pull/108126#pullrequestreview-560599381
 2021-01-01 19:48:01 +01:00
github-actions[bot]
0eb369d907
Merge staging-next into staging 2021-01-01 18:39:12 +00:00
Dmitry Kalinkin
8bee208bf8
Merge pull request #107335 from veprbl/pr/root_6_20_08 
root: 6.18.04 -> 6.22.06, don't build vendored LLVM
 2021-01-01 12:28:37 -05:00
R. RyanTM
43a4341bf7 nanovna-saver: 0.3.7 -> 0.3.8 2021-01-01 10:47:03 +00:00
Ben Siraphob
b04fc593e7 treewide: cmake buildInputs to nativeBuildInputs, minor cleanups 2021-01-01 11:52:33 +07:00
Florian Pester
b740afa546 colmap: 3.5 -> 3.6 2020-12-31 09:56:07 +01:00
Florian Pester
75eef96f08 colmapWithCuda: fix build 2020-12-31 09:56:07 +01:00
Pavol Rusnak
1017eb06b1
Merge pull request #101227 from herberteuler/fix/mathematica-12.1.1-opencv4 
mathematica: use opencv4
 2020-12-29 23:41:09 +01:00
Doron Behar
7c304d037f
Merge pull request #104848 from hjones2199/kstars-up 
kstars: 3.4.3 -> 3.5.0
 2020-12-28 00:16:21 +02:00
Doron Behar
6f8710ae1e
Merge pull request #107545 from wucke13/mission-planner 
mission-planner: init at version 1.3.74
 2020-12-28 00:02:53 +02:00
Hunter Jones
7d42517d83 kstars: 3.4.3 -> 3.5.0 2020-12-27 14:00:39 -06:00
freezeboy
3c89e637e8 bcal: 1.9 -> 2.2 2020-12-27 17:52:28 +01:00
wucke13
54c2534c3b mission-planner: init at version 1.3.74 2020-12-26 21:39:02 +01:00
Markus Kowalewski
1ba79ed57f
openmolcas: set platform to x86-64-linux 
This is the main development platforms. Others are not
officially supported.
 2020-12-26 16:58:58 +01:00
Markus Kowalewski
c3fadb95f4
openmolcas: fix fallout from #83888 
Removed non-functional lines.
Openmolcas does not build with the blas/lapack switching mechanism
 2020-12-26 01:55:46 +01:00
R. RyanTM
2c3ca45515 mavproxy: 1.8.29 -> 1.8.30 2020-12-24 08:35:40 -08:00
lsix
156b9cc570
Merge pull request #107482 from lsix/gama-2.12 
gama: 2.09 -> 2.12
 2020-12-24 08:22:07 +00:00
Matthias Beyer
fd4a486dea gama: 2.09 -> 2.12 
Signed-off-by: Matthias Beyer <mail@beyermatthias.de>
 2020-12-23 16:58:32 +00:00
freezeboy
8db56b4525 kstars: add optional dependencies 2020-12-23 17:22:41 +01:00
freezeboy
d63dc152e9 kstars: use mkDerivation instead of wrapQtAppsHook 2020-12-23 17:21:46 +01:00
Hunter Jones
bc28967a18 phd2: add GApps wrapper to fix breakage on non-nixos wayland systems 2020-12-22 12:12:13 -06:00
Dmitry Kalinkin
a30bff21e8
root: use llvm_5 from nixpkgs 2020-12-21 18:24:25 -05:00
Dmitry Kalinkin
b7e70092c5
root: 6.20.08 -> 6.22.06 2020-12-21 16:43:09 -05:00
FliegendeWurst
e49c1a0027
mathematica: 12.1.1 -> 12.2.0 (#107309) 2020-12-21 12:55:28 -05:00
Dmitry Kalinkin
7d6e0d5324
root: 6.18.04 -> 6.20.08 2020-12-20 23:49:54 -05:00
Justin Bedo
3a65e29d4b
SPAdes: add python dependency 2020-12-21 08:29:57 +11:00
Markus Kowalewski
7139a58f50
quantum-espresso: 6.5 -> 6.6 2020-12-19 21:14:40 +01:00
Timo Kaufmann
afead527c4
Merge pull request #105615 from collares/sage-update 
sage: 8.9 -> 9.2
 2020-12-19 18:13:16 +01:00
Millian Poquet
15ab96d5a7 simgrid: 3.25 -> 3.26 2020-12-19 14:03:33 +01:00
Vincent Laporte
66c0fc3609 cryptoverif: 2.03pl1 → 2.04 2020-12-18 08:20:10 +01:00
Vincent Laporte
b49a3fb852 cryptoverif: fix search for default library 2020-12-18 08:20:10 +01:00
Vincent Laporte
c5556b7454 coq_8_12: 8.12.1 → 8.12.2 2020-12-16 07:45:54 +01:00
Vincent Laporte
de8205f8bb coq_8_13: init at 8.13+β1 2020-12-15 21:13:40 +01:00
Mauricio Collares
8100c5a44b sage: 8.9 -> 9.2 fixups 2020-12-15 16:51:42 -03:00
Mauricio Collares
8b8cae779f pari: update tarball location, since it moved 2020-12-15 16:46:43 -03:00
Mauricio Collares
4058e45736 nauty: update tarball sha256 
The old `nauty` tarball is currently accessible at
https://distfiles.macports.org/nauty/nauty27r1.tar.gz. The diff is a
single line in genbg.c:

-    SUMMARY(&nout,t2-t1);
+    SUMMARY(nout,t2-t1);
 2020-12-15 16:46:43 -03:00
Mauricio Collares
cf6364bed2 pynac: import patch to avoid deprecation warnings on python3.8 2020-12-14 19:24:19 -03:00
Mauricio Collares
5df948d4cc giac: 1.5.0-21 -> 1.5.0-87 2020-12-14 19:24:18 -03:00
Masanori Ogino
5c4136daf7 sage: 8.9 -> 9.2 2020-12-14 19:24:18 -03:00
Mario Rodas
7666fb25d0
Merge pull request #106856 from jbedo/delly 
delly: 0.8.5 -> 0.8.6
 2020-12-14 08:10:03 -05:00
Ryan Mulligan
41cdb14aac
Merge pull request #106611 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.23.8 -> 2.23.9
 2020-12-13 15:28:16 -08:00
Justin Bedo
6ce06dccfc
delly: 0.8.5 -> 0.8.6 2020-12-14 09:55:57 +11:00
Robert Scott
d81a6bb6f2 hal-hardware-analyzer: 2.0.0 -> 3.1.9 2020-12-11 22:37:04 +00:00
Mario Rodas
8006772a05
Merge pull request #106612 from alyssais/cedille 
cedille: 1.1.1 -> 1.1.2; fix build
 2020-12-11 07:37:18 -05:00
Jörg Thalheim
a1cacefde5
Merge pull request #106480 from SCOTT-HAMILTON/spdlog 2020-12-11 07:45:06 +00:00
Sandro
f1e3b5160e
Merge pull request #103338 from hjones2199/siril 2020-12-11 07:35:23 +01:00
Hunter Jones
69741a7a48 siril: init at 0.99.6 2020-12-11 00:07:30 -06:00
Alyssa Ross
8b8dfc5d40
cedille: 1.1.1 -> 1.1.2; fix build 2020-12-10 23:07:32 +00:00
R. RyanTM
aa2148eb1f picard-tools: 2.23.8 -> 2.23.9 2020-12-10 23:06:36 +00:00
SCOTT-HAMILTON
d98fae8072
Update pkgs/applications/science/electronics/hal-hardware-analyzer/default.nix 
Co-authored-by: Drew <drewrisinger@users.noreply.github.com>
 2020-12-10 16:35:46 +01:00
SCOTT-HAMILTON
ddf90cb942 spdlog: use nixpkgs' fmt instead of bundled one 2020-12-10 10:47:00 +01:00
markuskowa
ba5c6f6075
Merge pull request #105133 from markuskowa/fix-gromacs 
Gromacs: fix SIMD flags, and OpenMP
 2020-12-08 09:10:38 +01:00
R. RyanTM
cec747d712 clingo: 5.4.0 -> 5.4.1 2020-12-07 13:03:03 +00:00
Ben Gamari
c98ce627d4
kicad-unstable: 2020-11-07 -> 2020-12-01 (#105743) 2020-12-03 19:17:32 -05:00
R. RyanTM
b3f3197266 mavproxy: 1.8.27 -> 1.8.29 2020-12-03 14:33:38 +00:00
Sandro
30cdc8be48
Merge pull request #105650 from r-ryantm/auto-update/gretl 
gretl: 2020b -> 2020e
 2020-12-02 20:22:27 +01:00
Ryan Mulligan
4ce30eb63a
Merge pull request #105672 from r-ryantm/auto-update/hmmer 
hmmer: 3.3.1 -> 3.3.2
 2020-12-02 05:45:57 -08:00
Austin Seipp
e601758166
abc-verifier: 2020.06.22 -> 2020.11.24 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-12-02 07:18:05 -06:00
Mario Rodas
d48bc3e815
Merge pull request #105654 from r-ryantm/auto-update/gmsh 
gmsh: 4.7.0 -> 4.7.1
 2020-12-02 05:15:45 -05:00
Austin Seipp
a3ae8a4fcf
Merge pull request #100750 from arcz/boolector 
boolector: enable darwin build
 2020-12-02 03:19:54 -06:00
R. RyanTM
6f50c5b18e hmmer: 3.3.1 -> 3.3.2 2020-12-02 09:00:15 +00:00
R. RyanTM
cf89444f1e gmsh: 4.7.0 -> 4.7.1 2020-12-02 05:50:47 +00:00
R. RyanTM
f9a694106b gretl: 2020b -> 2020e 2020-12-02 04:45:07 +00:00
Ben Darwin
ee7d83e648 ants: unbreak on Darwin 2020-12-01 14:17:54 -05:00
Markus Kowalewski
e90cff90f1
openmolcas: fix hash 2020-11-30 23:05:14 +01:00
Justin Bedo
5fc6258043
bwa: expand supported platforms 2020-11-30 09:46:51 +11:00
Artur Cygan
da3c0ca0dd boolector: fix darwin build 2020-11-29 22:31:54 +01:00
Artur Cygan
38e6f15d98 btor2tools: fix install_name on darwin 2020-11-29 22:31:31 +01:00
Vincent Laporte
8ee7c2505f proverif: install emacs mode 2020-11-29 14:05:14 +01:00
Sandro
4dc26ca31d
Merge pull request #92646 from r-ryantm/auto-update/tla-toolbox 
tlaplusToolbox: 1.6.0 -> 1.7.0
 2020-11-29 04:01:21 +01:00
Sandro
2c0389680c
Merge pull request #90075 from dmrauh/add/gretl 
gretl: init at 2020b
 2020-11-28 22:10:05 +01:00
Dominik Michael Rauh
5f10cd5e0b
gretl: init at 2020b 2020-11-28 21:37:30 +01:00
Doron Behar
56a2c8bb22
Merge pull request #104171 from freezeboy/unbreak-dsview-qt515 
dsview: 0.99 -> 1.12
 2020-11-28 17:55:25 +02:00
Timo Kaufmann
819a2c571a
Merge pull request #105212 from r-ryantm/auto-update/jmol 
jmol: 14.31.17 -> 14.31.18
 2020-11-28 10:46:52 +01:00
R. RyanTM
e5f757954a jmol: 14.31.17 -> 14.31.18 2020-11-28 06:51:19 +00:00
Sandro
85fe68bbc0
Merge pull request #105197 from r-ryantm/auto-update/igv 
igv: 2.8.12 -> 2.8.13
 2020-11-28 04:05:05 +01:00
R. RyanTM
212ba486d6 igv: 2.8.12 -> 2.8.13 2020-11-28 02:18:00 +00:00
Sandro
ec421ca248
Merge pull request #100532 from piegamesde/fix-desktopitems 
treewide: Fix broken desktop files and mark packages as broken
 2020-11-27 22:27:59 +01:00
Markus Kowalewski
58e1666a58
gromacs: fix SIMD flags, and OpenMP 
* make CPU acceleration selectable.
* update cmake flag for acceleration CPU_ACCELERATION -> SIMD
  GMX_CPU_ACCELERATION is outdated and has been ignored.
* add hwloc to inputs
* always build with OpenMP
* change name -> pname
 2020-11-27 13:59:01 +01:00
Michael Raskin
3ed321dfab z3: enable build on non-x86_64 unix; checked the build on aarch64-linux 2020-11-27 11:52:07 +01:00
Sandro
41408091bb
Merge pull request #105111 from r-ryantm/auto-update/workcraft 
workcraft: 3.3.1 -> 3.3.2
 2020-11-27 03:12:56 +01:00
R. RyanTM
b25018203b workcraft: 3.3.1 -> 3.3.2 2020-11-27 01:53:34 +00:00
Sandro
6ecdb286b0
Merge pull request #101464 from Synthetica9/redirected-urls 
treewide: ran ./maintainers/scripts/update_redirected_urls.sh
 2020-11-27 01:27:24 +01:00
Patrick Hilhorst
a6b3bb24e4
treewide: ran ./maintainers/scripts/update_redirected_urls.sh 2020-11-27 01:23:57 +01:00
Sandro
b08b773f24
Merge pull request #101807 from cheriimoya/pspp 
pspp 1.2.0 -> 1.4.1
 2020-11-27 00:35:16 +01:00
Gabriel Ebner
56ffa7a9e4
Merge pull request #105055 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.14.0 -> 3.15.0
 2020-11-26 19:04:24 +01:00
R. RyanTM
8c1f644cc7 qalculate-gtk: 3.14.0 -> 3.15.0 2020-11-26 17:48:20 +00:00
Sandro
605ecee7de
Merge pull request #102200 from hjones2199/master 
phd2: init at 2.6.9dev1
 2020-11-26 02:28:06 +01:00
Sandro
c2d728f195
Merge pull request #102140 from SuperSandro2000/patch-2 2020-11-26 01:00:22 +01:00
Sandro
28cb61eb5d
Merge pull request #104933 from tadfisher/horizon-eda 
horizon-eda: 1.2.1 -> 1.3.0
 2020-11-26 00:45:09 +01:00
Sandro
d8b570e6c8
Merge pull request #98363 from jbedo/mosdepth 
mosdepth: 0.2.9 -> 0.3.1
 2020-11-25 23:55:47 +01:00
Sandro
e166f22759
tebreak: Fix tests 2020-11-25 21:36:38 +01:00
Sandro
5f2997686c
deeptools: Fix tests 2020-11-25 21:36:37 +01:00
Tad Fisher
40db868048
horizon-eda: 1.2.1 -> 1.3.0 2020-11-25 12:23:45 -08:00
Sandro
b73851877c
Merge pull request #104866 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.24 -> 1.8.27
 2020-11-25 17:42:18 +01:00
R. RyanTM
3174ae1723 mavproxy: 1.8.24 -> 1.8.27 2020-11-25 05:57:05 +00:00
Hunter Jones
d14952311e phd2: init at 2.6.9dev1 2020-11-24 21:31:58 -06:00
Sandro
ea49bac768
Merge pull request #99761 from fgaz/key/init 
key: init at 2.6.3
 2020-11-25 01:49:25 +01:00
Mazurel
880974a84d qucs-s: init at 0.0.22 2020-11-24 19:24:38 +01:00
Graham Christensen
bc49a0815a
utillinux: rename to util-linux 2020-11-24 12:42:06 -05:00
Sandro
3da89983fd
Merge pull request #103590 from r-ryantm/auto-update/workcraft 
workcraft: 3.3.0 -> 3.3.1
 2020-11-24 02:07:43 +01:00
Sandro
b3f5ff2005
Merge pull request #103703 from r-ryantm/auto-update/gmsh 
gmsh: 4.6.0 -> 4.7.0
 2020-11-24 01:57:36 +01:00
Timo Kaufmann
e4af85f1d8
Merge pull request #104476 from refnil/pynac 
pynac: use python3 instead of python2
 2020-11-23 22:26:38 +01:00
R. RyanTM
3b17793827 star: 2.7.5c -> 2.7.6a 2020-11-23 20:40:05 +01:00
Sandro
b2219a326b
Merge pull request #101922 from penguwin/nextinspace 
nextinspace: init at 1.0.6
 2020-11-23 20:09:09 +01:00
Ryan Mulligan
5417bf80f5
Merge pull request #104395 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.23 -> 1.8.24
 2020-11-21 19:42:33 -08:00
freezeboy
9950899236 xflr5: migrate to Qt5.15 
rewrite without wrapQtAppsHook and stdenv
 2020-11-20 22:24:19 +01:00
freezeboy
f2335a5d98 appcsxcad: migrate to Qt5.15 
* remove useless wrapQtAppsHook
 2020-11-20 22:24:18 +01:00
freezeboy
ed7a64c4ee qcsxcad: migrate to Qt511 + additional cleanup 
* Split into multiple outputs
 * Rewrite the derivation without stdenv
 2020-11-20 22:24:18 +01:00
Martin Lavoie
30afa507a3 pynac: use python3 instead of python2 2020-11-20 20:46:43 +01:00
R. RyanTM
4615d67ac6 mavproxy: 1.8.23 -> 1.8.24 2020-11-20 17:43:07 +00:00
Austin Seipp
00c451ad40
librepcb: touch ups, co-maintain 
Fixes a bug where the build system tried to call `git` to embed the
release tag revision into the binary, which isn't allowed. Easily fixed
with `substituteInPlace`.

Also updates the expression to be a little closer to "standard"
expressions (e.g. consistent indentation, importing `stdenv` instead of
`lib` and `mkDerivation`, etc.)

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-11-20 07:36:27 -06:00
R. RyanTM
26803925aa ngspice: 32 -> 33 2020-11-19 22:57:08 -08:00
Dmitry Kalinkin
209480e580
Merge pull request #104103 from veprbl/pr/snakemake_5_28_0 
snakemake: 5.19.3 -> 5.28.0
 2020-11-19 20:37:25 -05:00
Ben Gamari
7263f7c433
mathematica: Prefer building locally (#100856) 
There is little benefit to copying a 4GB tarball over the network,
just to perform an I/O-bound operation and then copy the
multi-gigabyte result back.
 2020-11-19 19:42:22 -05:00
Timo Kaufmann
e04721b289
Merge pull request #104083 from timokau/sage-maintainers-team 
maintainers: create sage team
 2020-11-19 19:20:49 +01:00
Jörg Thalheim
72f6df338d remove genesis maintainer 
genesis has no longer access to github
 2020-11-18 22:37:56 -08:00
R. RyanTM
5a4772e260 marvin: 20.19.0 -> 20.20.0 2020-11-18 21:03:39 +00:00
Timo Kaufmann
b7319d2d35 maintainers: add raskin to the sage team 
https://github.com/NixOS/nixpkgs/pull/104083#issuecomment-729168625
 2020-11-18 21:29:24 +01:00
Timo Kaufmann
ff8338343b maintainers: create sage team 
Maintaining all the packages whose updates might break some aspect of
sage.

For reference:
https://github.com/NixOS/nixpkgs/pull/103810#issuecomment-727536510
 2020-11-18 21:27:37 +01:00
freezeboy
00b385c612 dsview: 0.99 -> 1.12 
Adapted the patches and took a commit from upstream master branch to
allow the migration to Qt5.15.

Had to copy the patch because of the custom sourceRoot.
 2020-11-18 15:36:11 +01:00
Dmitry Kalinkin
68e06c19d6
snakemake: 5.19.3 -> 5.28.0 2020-11-17 17:37:35 -05:00
Nicolas Martin
9af958340a
nextinspace: init at 1.0.6 2020-11-17 15:41:53 +01:00
Oleksii Filonenko
512c3c0a05 maintainers: rename filalex77 -> Br1ght0ne 2020-11-17 13:09:31 +02:00
Ryan Mulligan
80b6df2a17
Merge pull request #103525 from r-ryantm/auto-update/samblaster 
samblaster: 0.1.24 -> 0.1.26
 2020-11-16 19:03:03 -08:00
Austin Seipp
4b21cf786c
Merge pull request #102943 from prusnak/verilog 
verilog: unstable-2020-08-24 -> 11.0
 2020-11-15 21:19:22 -06:00
Anderson Torres
25afd6a3ec
Merge pull request #103768 from AndersonTorres/wip-antiprism 
antiprism: init at 0.26
 2020-11-15 19:43:57 -03:00
Vincent Laporte
2806eb2743 coq_8_12: 8.12.0 → 8.12.1 2020-11-15 12:03:15 +01:00
Ryan Mulligan
47fe890182
Merge pull request #103751 from r-ryantm/auto-update/last 
last: 1133 -> 1145
 2020-11-14 15:08:46 -08:00
Ryan Mulligan
306960bf1c
Merge pull request #103776 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.22 -> 1.8.23
 2020-11-14 13:34:35 -08:00
Pavol Rusnak
610d337764
vhd2vl: fix compatibility with verilog 11.0 2020-11-14 20:15:09 +01:00
Pavol Rusnak
960b4816a5
verilog: unstable-2020-10-24 -> 11.0 2020-11-14 20:15:09 +01:00
R. RyanTM
e3cf6e12bc
fahcontrol: 7.6.13 -> 7.6.21 (#103677) 2020-11-14 16:39:37 +00:00
R. RyanTM
68f44d990d
fahviewer: 7.6.13 -> 7.6.21 (#103688) 2020-11-14 16:39:20 +00:00
Mario Rodas
7408e58969
Merge pull request #103731 from r-ryantm/auto-update/igv 
igv: 2.8.11 -> 2.8.12
 2020-11-14 06:31:47 -05:00
Timo Kaufmann
99aab4ff25
Merge pull request #103749 from r-ryantm/auto-update/jmol 
jmol: 14.31.14 -> 14.31.17
 2020-11-14 09:53:01 +01:00
Timo Kaufmann
9a18684661
Merge pull request #103706 from r-ryantm/auto-update/gp2c 
gp2c: 0.0.11pl4 -> 0.0.12
 2020-11-14 09:52:34 +01:00
R. RyanTM
df7db2b3ed mavproxy: 1.8.22 -> 1.8.23 2020-11-14 06:25:20 +00:00
AndersonTorres
f61b91cec4 antiprism: init at 0.26 2020-11-14 00:37:10 -03:00
R. RyanTM
a698dfa0a2 last: 1133 -> 1145 2020-11-13 23:30:53 +00:00
R. RyanTM
dd8591d752 jmol: 14.31.14 -> 14.31.17 2020-11-13 22:05:46 +00:00
R. RyanTM
82d1113013 igv: 2.8.11 -> 2.8.12 2020-11-13 18:25:51 +00:00
R. RyanTM
3457f85820 gp2c: 0.0.11pl4 -> 0.0.12 2020-11-13 14:37:53 +00:00
R. RyanTM
a36f37b778 gmsh: 4.6.0 -> 4.7.0 2020-11-13 14:19:59 +00:00
Austin Seipp
c1661fa7e1
magic-vlsi: 8.3.5 -> 8.3.80, co-maintain 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-11-12 15:23:03 -06:00
Austin Seipp
58a906a7bf
iverilog: unstable-2020-08-24 -> unstable-2020-10-24 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-11-12 15:23:02 -06:00
R. RyanTM
8acd7a3540 workcraft: 3.3.0 -> 3.3.1 2020-11-12 10:54:47 +00:00
R. RyanTM
d1baaef83d samblaster: 0.1.24 -> 0.1.26 2020-11-12 01:43:02 +00:00
R. RyanTM
f7485d07b5 lean: 3.21.0 -> 3.23.0 2020-11-11 15:16:44 -08:00
Gabriel Ebner
05d27ba19b
Merge pull request #103256 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.13.0 -> 3.14.0
 2020-11-10 11:16:30 +01:00
R. RyanTM
3664e4929f qalculate-gtk: 3.13.0 -> 3.14.0 2020-11-10 01:49:59 +00:00
Frederik Rietdijk
20f001c01e Merge master into staging-next 2020-11-09 14:33:52 +01:00
Hunter Jones
5041cbc691 kstars: 2.9.8 -> 3.4.3 2020-11-09 12:21:31 +00:00
Luz
3bf8df2877 librepcb: 0.1.4 -> 0.1.5 2020-11-09 11:56:58 +00:00
Samuel Gräfenstein
22b73d1282 pkgs/*: add final newline to .nix files 2020-11-09 11:39:28 +00:00
Orivej Desh
0c75dfb732
convertall: init at 0.8.0 (#103108) 2020-11-09 01:45:09 +00:00
Masanori Ogino
88de0d7354
maxima: 5.42.2 -> 5.44.0 (#102861) 
Reference: https://sourceforge.net/p/maxima/code/ci/master/tree/ChangeLog-5.43.md
Reference: https://sourceforge.net/p/maxima/code/ci/master/tree/ChangeLog-5.44.md
Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-11-08 19:29:53 -05:00
markuskowa
428bea042e
Merge pull request #102296 from r-ryantm/auto-update/gromacs 
gromacs: 2020.3 -> 2020.4
 2020-11-08 11:31:54 +01:00
Evils
a52e974cff kicad-unstable: 2020-10-09 -> 2020-11-07 
patch for issue 72248 no longer applies
  issue doesn't seem to occur without it anymore...
 2020-11-07 16:29:52 +01:00
Evils
905134a79f kicad: 5.1.7 -> 5.1.8 2020-11-07 16:29:52 +01:00
Evils
50ec961174 kicad: fix update.sh bootstrapping 
it will now correctly build a version.nix file from scratch
 2020-11-07 16:29:52 +01:00
Evils
756f36b554 kicad: 5.1.6 -> 5.1.7 2020-11-07 16:29:52 +01:00
Jan Tojnar
a821be7531
Merge branch 'master' into staging-next 2020-11-05 09:42:47 +01:00
Gabriel Ebner
8279979f38 lean: build olean files 2020-11-04 16:32:56 +01:00
Ryan Mulligan
ba3fc8bf47
Merge pull request #102707 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.23.4 -> 2.23.8
 2020-11-04 06:11:08 -08:00
Frederik Rietdijk
10c57af49c Merge staging-next into staging 2020-11-04 09:28:07 +01:00
R. RyanTM
6391d3c1b5 picard-tools: 2.23.4 -> 2.23.8 2020-11-04 04:53:50 +00:00
Ryan Mulligan
4ee1f7bc2c
Merge pull request #102582 from r-ryantm/auto-update/marvin 
marvin: 20.17.0 -> 20.19.0
 2020-11-03 14:56:38 -08:00
Kevin Cox
d7a0daf2a1
Merge pull request #102420 from freezeboy/remove-plink 
plink: remove (broken since 2014)
 2020-11-03 07:49:09 -05:00
Frederik Rietdijk
470f05cb5d Merge staging-next into staging 2020-11-03 12:06:41 +01:00
R. RyanTM
aea6594c69 marvin: 20.17.0 -> 20.19.0 2020-11-03 04:38:29 +00:00
Mario Rodas
98bf2ceb68
Merge pull request #102464 from r-ryantm/auto-update/igv 
igv: 2.8.9 -> 2.8.11
 2020-11-02 18:21:36 -05:00
Timo Kaufmann
9560149052
Merge pull request #102479 from r-ryantm/auto-update/jmol 
jmol: 14.31.3 -> 14.31.14
 2020-11-02 19:31:29 +01:00
R. RyanTM
ccabae32dd gtkwave: 3.3.106 -> 3.3.107 2020-11-02 08:26:41 -08:00
R. RyanTM
41e1c236bf cytoscape: 3.8.1 -> 3.8.2 2020-11-02 08:20:13 -08:00
R. RyanTM
3d40283367 jmol: 14.31.3 -> 14.31.14 2020-11-02 12:07:07 +00:00
R. RyanTM
8ef46be2a4 igv: 2.8.9 -> 2.8.11 2020-11-02 10:16:32 +00:00
Pavol Rusnak
2c931312ce treewide: simplify rev/repo arguments in src 
+ use fetchFromGithub where possible
 2020-11-01 23:02:24 -08:00
freezeboy
1f7e201e9e plink: remove (broken since 2014) 2020-11-02 03:24:16 +01:00
R. RyanTM
036cec187c ginac: 1.7.9 -> 1.8.0 2020-11-01 17:19:05 -08:00
Frederik Rietdijk
83dde6c52c Merge staging-next into staging 2020-11-01 10:11:12 +01:00
R. RyanTM
afa6047e12 gromacs: 2020.3 -> 2020.4 2020-11-01 00:24:33 +00:00
Vincent Laporte
8cab21b48b Revert "coq: propagate and install ocaml and findlib" 
This reverts commit 5d0e2dedd5.
 2020-10-31 09:08:06 +01:00
Justin Bedo
32573f4b6e
last: 1066 -> 1133 2020-10-31 10:59:02 +11:00
Maximilian Bosch
952dc5c7ff
Merge pull request #101421 from sikmir/geogebra 
geogebra: 5-0-593-0 -> 5-0-609-0, geogebra6: 6-0-600-0 -> 6-0-609-0
 2020-10-30 23:39:37 +01:00
Renato Alves
6e19ed0a52
lumpy: 0.3.0 -> 0.3.1 2020-10-30 01:28:00 +01:00
Renato Alves
a28e5b0a4f
samtools: 1.10 -> 1.11 2020-10-29 18:27:22 +01:00
Andreas Rammhold
db0fe5c3eb
Merge branch master into staging to fix eval error 
This fixes the eval error of the small (and "big"?) NixOS test set that
was fixed in 1088f05 & eba8f542.
 2020-10-28 03:03:27 +01:00
Ben Siraphob
db74029e3e treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
Max Hausch
8fb91897f4
pspp 1.2.0 -> 1.4.1 2020-10-27 01:10:37 +01:00
Masanori Ogino
40fb3ed6dc maxima: remove 5.41.0 
It had been kept for SageMath, but it uses the default version nowadays
and this version is not referenced in nixpkgs.

Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-10-27 06:09:12 +09:00
Maximilian Bosch
61fa498994
Merge pull request #101646 from luc65r/pkg/rofi-calc 
rofi-calc: 1.8 -> 1.9
 2020-10-26 16:36:43 +01:00
Ryan Mulligan
4fce633319
Merge pull request #101716 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.1.2 -> 3.1.3
 2020-10-26 05:43:38 -07:00
Vladimír Čunát
336bc8283b
Re-Revert "Merge #101508: libraw: 0.20.0 -> 0.20.2" 
This reverts commit c778945806.

I believe this is exactly what brings the staging branch into
the right shape after the last merge from master (through staging-next);
otherwise part of staging changes would be lost
(due to being already reachable from master but reverted).
 2020-10-26 08:19:17 +01:00
R. RyanTM
250757970b openhantek6022: 3.1.2 -> 3.1.3 2020-10-26 00:37:51 +00:00
Peter Simons
40bc6c8dad
Merge pull request #100393 from matthiasbeyer/update-r 
R: 4.0.2 -> 4.0.3
 2020-10-25 21:57:03 +01:00
Lucas Ransan
2436e41916 rofi-calc: 1.8 -> 1.9 2020-10-25 14:31:57 +01:00
Vladimír Čunát
c778945806
Revert "Merge #101508: libraw: 0.20.0 -> 0.20.2" 
I'm sorry; I didn't notice it contained staging commits.

This reverts commit 17f5305b6c, reversing
changes made to a8a018ddc0.
 2020-10-25 09:41:51 +01:00
Vladimír Čunát
17f5305b6c
Merge #101508: libraw: 0.20.0 -> 0.20.2 2020-10-25 09:28:53 +01:00
Nikolay Korotkiy
a2472ebfb1
geogebra: 5-0-593-0 -> 5-0-609-0, geogebra6: 6-0-600-0 -> 6-0-609-0 2020-10-23 19:25:11 +03:00
Vincent Laporte
2cb651ad14 cryptoverif: 2.01pl1 → 2.03pl1 2020-10-23 10:20:09 +02:00
Anderson Torres
253fb7648c
Merge pull request #101244 from zaninime/nanovna-saver 
nanovna-saver: init at 0.3.7
 2020-10-22 20:42:56 -03:00
Jan Tojnar
3e01d383ee
Merge branch 'staging-next' into staging 2020-10-22 21:20:32 +02:00
Francesco Zanini
2a54c4f950 nanovna-saver: init at 0.3.7 2020-10-22 16:23:13 +02:00
Daiderd Jordan
bb0b872b61
Merge pull request #100388 from thefloweringash/darwin-dylib-names-hook 
treewide: move fixDarwinDylibNames to nativeBuildInputs
 2020-10-21 19:25:48 +02:00
Théo Zimmermann
5d0e2dedd5 coq: propagate and install ocaml and findlib 
Fix #34657.
 2020-10-21 11:07:02 +02:00
markuskowa
4eb5b1285c
Merge pull request #101065 from markuskowa/fix-molcas 
openmolcas: 19.11 -> 20.10
 2020-10-21 09:37:28 +02:00
Andrew Childs
722d02a720 treewide: move fixDarwinDylibNames to nativeBuildInputs 
This hook runs at build time and depends on executing
install_name_tool from binutils.
 2020-10-21 13:26:53 +09:00
Guanpeng Xu
efe94c085b mathematica: use opencv4 
The default opencv2 is marked broken at 5e68d203, and it is suggested
there that the current release is 4.x.
 2020-10-21 08:36:54 +08:00
Austin Seipp
fba7eaeb63
Merge pull request #100741 from arcz/btor2tools 
btor2tools: enable unix platforms
 2020-10-19 16:18:56 -05:00
Markus Kowalewski
2eee4e4eac
openmolcas: 19.11 -> 20.10 2020-10-19 14:13:08 +02:00
Markus Kowalewski
8b02ff6b8e
openmolcas: fix build w.r.t. openblas 
Fall out from switching openblas over to multiple outputs:
https://github.com/NixOS/nixpkgs/pull/98337
 2020-10-19 14:00:48 +02:00
Masanori Ogino
096ef94717 gfan: fix build failures with cddlib v0.94l 
It fixes https://github.com/NixOS/nixpkgs/issues/100622.

Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-10-19 10:29:01 +09:00
Gabriel Ebner
6d22203168
Merge pull request #101010 from r-ryantm/auto-update/lean 
lean: 3.19.0 -> 3.21.0
 2020-10-18 20:10:42 +02:00
R. RyanTM
855b84d8b0 lean: 3.19.0 -> 3.21.0 2020-10-18 17:00:15 +00:00
Doron Behar
1693d00562
Merge pull request #85456 from matthuszagh/kicad-libraries 2020-10-17 20:31:38 +03:00
Ryan Mulligan
ed8a50fa13
Merge pull request #100548 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.19 -> 1.8.22
 2020-10-17 10:28:18 -07:00
Matt Huszagh
9320c69ecb kicad: set default footprint, symbol library and package locations 
Previously, these library locations were set absolutely. This
prevented overriding their locations with environment variables. Now,
setting the corresponding environment variable will override the
setting in the environment wrapper. For instance, I can set

KISYSMOD=/some/path/to/footprints

and this will be used as my footprint library instead of the default
footprint library in the nix store. This feature is particularly
useful for having kicad libraries which are writable.
 2020-10-17 09:32:55 -07:00
Ben Siraphob
683a87dbeb treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
Artur Cygan
5229b4502a btor2tools: enable unix platforms 2020-10-16 19:39:46 +02:00
Ryan Mulligan
f9728adae7
Merge pull request #99128 from jbedo/delly 
delly: 0.8.2 -> 0.8.5
 2020-10-16 06:30:11 -07:00
R. RyanTM
a3dca9576b deeptools: 3.4.1 -> 3.5.0 2020-10-16 00:42:47 -07:00
Doron Behar
1db3202722
Merge pull request #75843 from jbedo/lumpy 2020-10-15 19:46:13 +03:00
piegames
e14a359896 treewide: Fix broken desktop files and mark packages as broken 
This fixes all packages that are failed `nixpkgs-review` in #91790.
Packages that were broken prior to that PR were marked as broken.
Packages that failed because of #75729 were fixed.
 2020-10-15 15:14:51 +02:00
R. RyanTM
af82dfa808 mavproxy: 1.8.19 -> 1.8.22 2020-10-15 05:05:52 +00:00
Frederik Rietdijk
b981eca057 Merge master into staging-next 2020-10-14 11:32:49 +02:00
Anderson Torres
a9637e5b52
Merge pull request #100357 from AndersonTorres/zegrapher-new 
zegrapher: init at 3.1.1
 2020-10-13 15:14:04 -03:00
Frederik Rietdijk
9e1943edc0 Merge master into staging-next 2020-10-13 19:34:34 +02:00
Vincent Laporte
33b7529b01
tamarin-prover: 1.4.1 → 1.6.0 (#100148) 2020-10-13 10:16:11 +02:00
Matthias Beyer
ea4a13e573 R: 4.0.2 -> 4.0.3 
Signed-off-by: Matthias Beyer <mail@beyermatthias.de>
 2020-10-13 10:05:15 +02:00
AndersonTorres
1331d642e0 zegrapher: init at 3.1.1 2020-10-12 19:31:34 -03:00
Doron Behar
58b8ae4127
Merge pull request #100066 from matthuszagh/kicad-srcs 2020-10-12 22:55:16 +03:00
Matt Huszagh
f2cb2c447d kicad: add srcs parameter to allow configuring kicad versions 
This also exposes the full src and version parameters for each
derivation, allowing them to overrideable by srcs.
 2020-10-12 11:32:44 -07:00
Matt Huszagh
9d13164b27 kicad: Rename <feature>Support arguments to with<Feature> 
Also: Use assertions instead of silently ignoring arguments that don't cooperate
(occ+oce) / won't compile (aarch64 + oce).

base.nix no longer provides default argument values since these are
provided by default.nix.
 2020-10-12 11:32:04 -07:00
Anderson Torres
e61c9d185d
Merge pull request #100193 from AndersonTorres/big-upload 
A bunch of updates
 2020-10-12 08:48:52 -03:00
AndersonTorres
69c14beb04 gp2c: 0.0.11pl3 -> 0.0.11pl4 2020-10-12 04:07:03 -03:00
AndersonTorres
781753db45 pari: 2.11.3 -> 2.11.4 2020-10-12 04:07:03 -03:00
Claudio Bley
0f6b8b7964 fritzing: 0.9.3b -> 0.9.4 
Notes:

* fritzing still needs an older version of libgit2
* releases no longer directly correspond to tags in the git repository, they are
  using build numbers instead
* the fritzing-parts repository is no longer versioned at all, the master branch
  contains the latest stable release
* a `parts.db` file needs to be generated from the fritzing-parts files during
  the build
 2020-10-11 16:51:59 -07:00
Matt Huszagh
937c2597d9 ngspice: 31 -> 32 2020-10-11 16:10:33 +02:00
Wulfsta
77143fc628 mathematica: fix libQt errors 2020-10-11 15:49:11 +02:00
Gabriel Ebner
b03c6ef37d
Merge pull request #99503 from NieDzejkob/isabelle-z3-fix 2020-10-11 12:39:09 +02:00
Matt Huszagh
85d5195f70 kicad: remove unnecessary with lib; statements 2020-10-10 16:22:04 -07:00
Jan Tojnar
aabcf2d8f5
Merge branch 'master' into staging-next 2020-10-11 00:27:21 +02:00
Matt Huszagh
e2fea84597 kicad: clarify wrapGAppsHook comment 2020-10-10 15:15:43 -07:00
Matt Huszagh
b3e2b523e5 kicad: reformat with nixpkgs-fmt 2020-10-10 12:53:09 -07:00
Vladimír Čunát
338b25697c
Merge branch 'master' into staging-next 
Quite many rebuilds from master:
> Estimating rebuild amount by counting changed Hydra jobs.
>    3926 x86_64-darwin
>    4645 x86_64-linux
 2020-10-10 11:32:10 +02:00
Doron Behar
967a01f206
Merge pull request #100065 from matthuszagh/kicad 2020-10-10 12:28:09 +03:00
Daniel Schaefer
384470e23f
Merge pull request #99964 from guserav/horizon-eda 
horizon-eda: init at 1.2.1
 2020-10-10 11:49:07 +08:00
guserav
6a4c1972a2 horizon-eda: init at 1.2.1 
Mostly based on #86694 by yrashk
 2020-10-09 19:57:38 +02:00
Matt Huszagh
104aca941a kicad-unstable: 2020-08-22 -> 2020-10-09 
base.nix requires gtk3 to compile
 2020-10-09 07:36:42 -07:00
Matt Huszagh
b67afd8a44 kicad: modify update script to use gitlab for libraries 
Kicad libraries are now hosted on gitlab instead of github.
 2020-10-09 07:36:41 -07:00
Frederik Rietdijk
ec28e32c9e Merge master into staging-next 2020-10-08 21:47:26 +02:00
Dmitry Kalinkin
b0486f3171
pythia: 8.244 -> 8.303 2020-10-07 20:28:19 -04:00
Ben Darwin
e673c285e1 conglomerate: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin
44f2bf87d6 EZminc: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin
83d0571ae6 mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc 2020-10-06 15:31:17 -04:00
Ben Darwin
9a190786a4 n3: 2017-09-18 -> 2018-08-09 
- update LIBMINC_DIR and EBTKS_DIR due to CMake updates in those packages
 2020-10-06 15:31:16 -04:00
Ben Darwin
7772e248ab inormalize: update LIBMINC_DIR and dependencies due to libminc update 2020-10-06 15:31:16 -04:00
Ben Darwin
91a429a148 minc_tools: unstable-2019-12-04 -> unstable-2020-07-25 2020-10-06 15:31:14 -04:00
Francesco Gazzetta
a302261318 key: init at 2.6.3 2020-10-06 17:37:23 +02:00
Frederik Rietdijk
692d219a93 Merge staging-next into staging 2020-10-06 10:25:58 +02:00
Jakub Kądziołka
8205e12a45
z3_4_4_0: add old version for Isabelle 2020-10-03 21:32:22 +02:00
Justin Bedo
d8d8f9390a
delly: 0.8.2 -> 0.8.5 2020-10-01 18:09:53 +10:00
Anderson Torres
5e99485b3d
Merge pull request #99214 from bcdarwin/update-mrtrix 
mrtrix: 3.0.0 -> 3.0.2
 2020-10-01 01:14:54 -03:00
Ben Darwin
a94d0fe675 mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
Vincent Laporte
cc739e1c67 ocamlPackages.z3: init at 4.8.9 2020-09-30 22:03:17 +02:00
Justin Bedo
634927a402
mosdepth: 0.2.9 -> 0.3.1 2020-09-30 09:48:47 +10:00
Jan Tojnar
32b4375f10
Merge branch 'staging-next' into staging 2020-09-29 00:12:29 +02:00
Dmitry Kalinkin
dd57dcf2a5
stellarium: enable on darwin 2020-09-27 17:00:10 -04:00
Maximilian Bosch
b8d1e39a28
stellarium: 0.20.2 -> 0.20.3 
https://github.com/Stellarium/stellarium/releases/tag/v0.20.3
 2020-09-27 22:09:36 +02:00
Matt Huszagh
6b9481607b openems: init at unstable-2020-02-15 2020-09-27 11:32:27 -07:00
Robert Scott
8db3ea1ef1
Merge pull request #98614 from r-burns/aragorn 
aragorn: fix build on darwin
 2020-09-25 19:58:10 +01:00
Dmitry Kalinkin
7867aafa51
Merge pull request #97613 from drewrisinger/zhf/verilog 
verilog: cleanup & test
 2020-09-25 10:37:34 -04:00
R. RyanTM
e66a7e2fb7 cytoscape: 3.8.0 -> 3.8.1 2020-09-25 04:38:49 +00:00
Jan Tojnar
d471c5d1f3
Merge branch 'staging-next' into staging 2020-09-24 23:09:00 +02:00
R. RyanTM
0765b507f9 jmol: 14.31.2 -> 14.31.3 2020-09-23 23:36:41 -07:00
Ryan Burns
6cc2d3e6f2 aragorn: fix build on darwin 
Use environment-specified $CC for C compiler
 2020-09-23 20:45:21 -07:00
Ryan Mulligan
dfd2eeabd6
Merge pull request #69644 from bzizou/obitools 
obitools3: init at 3.0.0-beta14
 2020-09-23 19:04:11 -07:00
Doron Behar
0307d0e82b
Merge pull request #98441 from vbgl/why3-1.3.3 
why3: 1.3.1 -> 1.3.3
 2020-09-23 10:35:57 +03:00
Daniël de Kok
af5b1a9f94
Merge pull request #98427 from jbedo/octopus 
octopus-caller: 0.6.3 -> 0.7.0
 2020-09-23 08:24:10 +02:00
Jon
c7fdc43709
Merge pull request #98283 from risicle/ris-truvari-2.0.2 
truvari: 1.3.4 -> 2.0.2, add new dependencies & fix build
 2020-09-22 23:10:58 -07:00
Robert Scott
fc709e6dfe cvc3: enable for darwin 
it may be possible to get it building under clang with some work, but
switching it to gcc for now allows us to enable it
 2020-09-22 23:06:45 -07:00
Robert Scott
53a8a415ac cvc3: fix build against bison 3.7 
for some reason bison 3.7 output references $x_defs.h files under the name
$x.hpp. create symlinks to make this work.
 2020-09-22 23:06:45 -07:00
Austin Seipp
daaa0e3350
Merge pull request #98239 from Sohalt/avy 
avy: 2017.10.16 -> cav19
 2020-09-22 23:19:05 -05:00
Vincent Laporte
64b68b30e9
why3: 1.3.1 -> 1.3.3 2020-09-23 03:24:02 +02:00
Drew Risinger
ba886f7b1a verilog: add tests 
Run recommended self-tests from iverilog's CI.

Tests add about a minute to the build time on local machine
(2 -> 3 mins).
 2020-09-22 13:58:15 -04:00
Drew Risinger
0d9a6e2da5 verilog: cleanup 
Meta attributes were out of date or not in current style,
and some attributes of derivation were redundant.
 2020-09-22 13:58:06 -04:00
Justin Bedo
4bbdb75f22
octopus-caller: 0.6.3 -> 0.7.0 2020-09-22 08:43:04 +10:00
WORLDofPEACE
34aaac6d7c Merge branch 'staging-next' into staging 2020-09-20 18:41:15 -04:00
sohalt
40722346b8 avy: 2017.10.16 -> 2019.05.01 2020-09-20 16:13:29 +02:00
Robert Scott
ecd5886830 truvari: 1.3.4 -> 2.0.2, fixing build 
seeing it has no tests, use pythonImportsCheck in an attempt to detect
total breakage, even though it's not intended to be used as an importable
module
 2020-09-20 12:25:17 +01:00
Robert Scott
f1d2491057 bwa: include static library and some key headers in output 2020-09-20 12:23:18 +01:00
Gabriel Ebner
efa2089077
Merge pull request #89731 from doronbehar/jdk_rename 2020-09-20 11:07:55 +02:00
Robert Scott
4637721bc1 truvari: fix build 
be less strict about versions
 2020-09-19 20:25:08 -07:00
Gabriel Ebner
67ff41201f leo3: fix executable 2020-09-19 15:05:02 +02:00
Gabriel Ebner
1c576d0b37 sage: use jdk8 2020-09-19 14:22:43 +02:00
Hannes Weisbach
9c73e34d18 kicad: remove gettext from buildInputs, add to nativeBuildInputs 
The i18n "library" does not link against gettext. It only requires the
msgfmt utility from gettext, hence gettext should be a nativeBuildInput
 2020-09-17 19:48:50 +02:00
Vladyslav M
9147432d5f
Merge pull request #98062 from jonringer/fix-streamlit 
streamlit: fix build
 2020-09-16 23:45:32 +03:00
Austin Seipp
f1f1396167
Merge pull request #98109 from Pamplemousse/verilator 
verilator: 4.040 -> 4.100
 2020-09-16 14:25:25 -05:00
Pamplemousse
9839c0b292 verilator: 4.040 -> 4.100 
Signed-off-by: Pamplemousse <xav.maso@gmail.com>
 2020-09-16 08:40:01 -07:00
Anderson Torres
811709ff94
Merge pull request #95734 from trepetti/flatcam 
flatcam: init at 8.5
 2020-09-15 23:17:59 -03:00
Jonathan Ringer
07660b28bc streamlit: fix build 2020-09-15 11:19:26 -07:00
Vincent Laporte
cc4a33d78c ott: 0.30 → 0.31 2020-09-14 21:42:22 +02:00
Sébastien Maret
234b39a6d4
gildas: 20200601_b -> 20200901_a (#97968) 2020-09-14 11:18:06 -04:00
Robert Scott
35ca475f8b
Merge pull request #97757 from freezeboy/fix-lp_solve 
lp_solve: fix build
 2020-09-13 11:00:26 +01:00
Vladimír Čunát
e78b52ede7
Merge #95089: glibc: 2.31 -> 2.32 (into staging) 2020-09-13 08:26:14 +02:00
freezeboy
3fc3fd14cf lp_solve: fix buildCommand some binaries moved 2020-09-13 03:51:51 +02:00
Maximilian Bosch
81cf190882
sherpa: fix build w/glibc-2.32 2020-09-12 23:04:48 +02:00
Maximilian Bosch
8984fc2994
xfitter: fix build w/glibc-2.32 2020-09-12 23:04:47 +02:00
Thomas Tuegel
87c7d1d4f8
z3: 4.8.8 -> 4.8.9 2020-09-11 14:38:43 -05:00
Maximilian Bosch
56708c3bf3
Merge pull request #97555 from badmutex/badi/maintainers-update 
maintainers: updates for badi/badmutex
 2020-09-09 23:03:52 +02:00