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Merge pull request #69644 from bzizou/obitools

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obitools3: init at 3.0.0-beta14
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Ryan Mulligan 2020-09-23 19:04:11 -07:00 committed by GitHub
commit dfd2eeabd6
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38
pkgs/applications/science/biology/obitools/obitools3.nix Normal file
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@ -0,0 +1,38 @@
{ stdenv, fetchurl, python3Packages, cmake, python3 }:
let
pythonPackages = python3Packages;
in
pythonPackages.buildPythonApplication rec {
pname = "obitools3";
version = "3.0.0-beta14";
src = fetchurl {
url = "https://git.metabarcoding.org/obitools/${pname}/repository/v${version}/archive.tar.gz";
sha256 = "17krklxfvxl6baf2m394gm1a88y0lg0bwqx20cf5q39zyw04z442";
};
preBuild = ''
substituteInPlace src/CMakeLists.txt --replace \$'{PYTHONLIB}' "$out/lib/${python3.libPrefix}/site-packages";
export NIX_CFLAGS_COMPILE="-L $out/lib/${python3.libPrefix}/site-packages $NIX_CFLAGS_COMPILE"
'';
disabled = !pythonPackages.isPy3k;
nativeBuildInputs = [ pythonPackages.cython cmake ];
dontConfigure = true;
doCheck = true;
enableParallelBuilding = true;
meta = with stdenv.lib ; {
description = "Management of analyses and data in DNA metabarcoding";
homepage = "https://git.metabarcoding.org/obitools/obitools3";
license = licenses.cecill20;
maintainers = [ maintainers.bzizou ];
platforms = platforms.all;
};
}

2
pkgs/top-level/all-packages.nix
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@ -25980,6 +25980,8 @@ in
manta = callPackage ../applications/science/biology/manta { };
obitools3 = callPackage ../applications/science/biology/obitools/obitools3.nix { };
octopus-caller = callPackage ../applications/science/biology/octopus { };
paml = callPackage ../applications/science/biology/paml { };