3193 Commits

Author	SHA1	Message	Date
Lassulus	a8d26fc34a	Merge pull request #63127 from bzizou/trimal ... trimal: init at 1.4.1	2019-08-31 13:04:41 +02:00
Frederik Rietdijk	ad1d58c622	Merge staging-next into staging	2019-08-31 10:04:20 +02:00
Frederik Rietdijk	fc74ba8291	Merge master into staging-next	2019-08-31 09:50:38 +02:00
volth	08f68313a4	treewide: remove redundant rec	2019-08-28 11:07:32 +00:00
Frederik Rietdijk	5061fe0c2c	Merge staging-next into staging	2019-08-28 08:26:42 +02:00
Léo Gaspard	8a4721d606	Merge pull request #64669 from luispedro/add_sortmerna ... sortmerna: init at 3.0.3	2019-08-27 17:19:53 +02:00
Frederik Rietdijk	98640fd482	Merge master into staging-next	2019-08-27 16:36:47 +02:00
Luis Pedro Coelho	bc22c2e07f	sortmerna: init at 3.0.3 ... This is a useful package in bioinformatics, namely in processing short-read sequencing data from metagenomes	2019-08-27 00:37:43 +02:00
volth	35d68ef143	treewide: remove redundant quotes	2019-08-26 21:40:19 +00:00
Jonathan Ringer	6f279584fd	stp: 2.2.0 -> 2.3.3	2019-08-26 14:00:48 -07:00
Robin Gloster	616b8343c4	Merge remote-tracking branch 'upstream/master' into gcc-8	2019-08-25 18:55:46 +02:00
Vladimír Čunát	985d1ac425	Merge branch 'master' into staging-next ... There were several more conflicts from name -> pname+version; all auto-solved by kdiff3, hopefully OK. Hydra nixpkgs: ?compare=1538611	2019-08-25 14:57:11 +02:00
Gabriel Ebner	440c63a38a	vampire: 4.2.2 -> 4.4	2019-08-25 14:43:51 +02:00
Nikolay Amiantov	9015d7a4f1	sumorobot-manager: init at 0.9.0	2019-08-24 19:11:27 +03:00
Vladimír Čunát	2e6bf42a22	Merge branch 'master' into staging-next ... There ver very many conflicts, basically all due to name -> pname+version. Fortunately, almost everything was auto-resolved by kdiff3, and for now I just fixed up a couple evaluation problems, as verified by the tarball job. There might be some fallback to these conflicts, but I believe it should be minimal. Hydra nixpkgs: ?compare=1538299	2019-08-24 08:55:37 +02:00
Emily	05c54717f8	symbiyosys: extend platforms	2019-08-23 02:14:40 -05:00
Marek Mahut	44d43368cb	Merge pull request #67155 from r-ryantm/auto-update/tulip ... tulip: 5.1.0 -> 5.2.1	2019-08-21 21:40:06 +02:00
R. RyanTM	187ec1a8c6	tulip: 5.1.0 -> 5.2.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/tulip/versions	2019-08-20 19:45:43 -07:00
Marek Mahut	51980d6830	Merge pull request #67019 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.20.4 -> 2.20.5	2019-08-20 20:15:31 +02:00
R. RyanTM	41571dc81a	picard-tools: 2.20.4 -> 2.20.5 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-08-19 21:40:40 -07:00
Marek Mahut	b8a9d33bcd	Merge pull request #66884 from markuskowa/upd-octopus ... octopus: 9.0 -> 9.1	2019-08-19 11:53:01 +02:00
Marek Mahut	22aa7eadf1	Merge pull request #66871 from peterhoeg/f/apmplanner ... apmplanner2: fix build against qt 5.12	2019-08-19 11:43:40 +02:00
Markus Kowalewski	a81bb36249	octopus: 9.0 -> 9.1 ... * switch to GitLab download * cleanup fftw dependence	2019-08-19 10:24:44 +02:00
Peter Hoeg	374e0ad0a8	pulseview: use mkDerivation	2019-08-19 08:14:21 +02:00
Peter Hoeg	abbac2334b	apmplanner2: fix build against qt 5.12	2019-08-19 14:01:55 +08:00
Timo Kaufmann	071a4db33e	sage: 8.9.beta6 -> 8.9.beta7	2019-08-19 00:16:06 +02:00
Timo Kaufmann	e8436f5e23	sage: 8.9.beta5 -> 8.9.beta6	2019-08-18 21:52:27 +02:00
Frederik Rietdijk	f65aa21bb2	Merge master into staging-next	2019-08-18 12:53:44 +02:00
Vladimír Čunát	8ed485c67b	Merge #65948: tlaplusToolbox: 1.5.7 -> 1.6.0	2019-08-18 10:11:50 +02:00
Frederik Rietdijk	113dbfeb27	Merge pull request #66596 from emilazy/update-pypy-and-eda-tools ... Update PyPy and FOSS EDA tools	2019-08-17 17:48:21 +02:00
volth	c814d72b51	treewide: name -> pname	2019-08-17 10:54:38 +00:00
Frederik Rietdijk	fe9a3e3e63	Merge staging-next into staging	2019-08-17 09:39:23 +02:00
Timo Kaufmann	192197dc6c	Merge pull request #65802 from timokau/sage-transient-debug ... sage: add patch to debug transient issue	2019-08-17 00:33:05 +02:00
Timo Kaufmann	41bb319462	sage: avoid running out of memory during tests	2019-08-16 23:50:55 +02:00
markuskowa	8f5ce70861	Merge pull request #66665 from markuskowa/upd-molden ... molden: 6.1 -> 6.2	2019-08-15 18:59:50 +02:00
Matthew Bauer	ae15177ade	calc: don’t include glibc headers in closure	2019-08-15 23:31:14 +09:00
volth	46420bbaa3	treewide: name -> pname (easy cases) (#66585) ... treewide replacement of stdenv.mkDerivation rec { name = "*-${version}"; version = "*"; to pname	2019-08-15 13:41:18 +01:00
Markus Kowalewski	5b0bbcbb6e	molden: 6.1 -> 6.2	2019-08-15 09:35:34 +02:00
Gabriel Ebner	0a1e131077	gmsh: opencascade support	2019-08-14 19:09:40 +02:00
Gabriel Ebner	f91904a889	calculix: init at 2.15	2019-08-14 19:09:40 +02:00
Emily	a51e3987ad	symbiyosys: 2019.04.18 -> 2019.08.13	2019-08-14 00:14:22 -07:00
Dmitry Kalinkin	34224c7ba0	Merge pull request #66117 from veprbl/pr/hepmc_2_06_10 ... hepmc: 2.06.09 -> 2.06.10	2019-08-11 22:16:16 -04:00
Timo Kaufmann	3541df594e	Merge pull request #66396 from timokau/sage-undo-short ... sage: default to long tests again	2019-08-10 13:16:00 +02:00
Lancelot SIX	8137a78adc	Merge pull request #66063 from lsix/drop_motu_client ... motu_client: drop	2019-08-10 00:02:12 +02:00
Timo Kaufmann	f6265b0da5	sage: default to long tests again ... Changed by accident in 5e58c5f900.	2019-08-09 18:42:14 +02:00
Timo Kaufmann	9ef44b3431	sage: move sympow cache to .sage	2019-08-09 17:45:14 +02:00
Timo Kaufmann	5e58c5f900	sympow: 1.018.1 -> 2.023.4 ... Maintenance taken over by debian package maintainer jgmbenoit: https://trac.sagemath.org/ticket/3360#comment:17 This moves sympow to his fork, since there is no offical version-controlled source repository from the original author and they do not seem to maintain sympow anymore. We had already accumulated quite some patches from debian, who have effectively maintained sympow for a while now.	2019-08-09 17:45:08 +02:00
Timo Kaufmann	ddd3faf08e	sage: 8.9.beta4 -> 8.9.beta5	2019-08-07 15:33:15 +02:00
Ryan Mulligan	423e09b3b5	Merge pull request #66018 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.20.3 -> 2.20.4	2019-08-06 21:44:53 -07:00
Gabriel Ebner	ef3b016545	Merge branch 'qalc330'	2019-08-06 09:08:58 +02:00
Gabriel Ebner	ca1895ace3	qalculate-gtk: 3.2.0 -> 3.3.0	2019-08-06 09:03:45 +02:00
Dmitry Kalinkin	ecef988054	hepmc: rename to hepmc2	2019-08-05 17:47:43 -04:00
Lancelot SIX	2e955ca4c5	motu_client: drop ... This fork of cls-motu is unmaintained. Remove it from nixpkgs.	2019-08-05 14:32:25 +02:00
R. RyanTM	3bfd09b76d	picard-tools: 2.20.3 -> 2.20.4 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-08-04 23:04:42 -07:00
R. RyanTM	5bb58479d7	jmol: 14.29.46 -> 14.29.49 (#65951) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/jmol/versions	2019-08-04 22:09:13 +02:00
Badi Abdul-Wahid	40b53a5d0d	tla+ toolbox: 1.5.7 -> 1.6.0 ... Bumps to new release of TLA+ Toolbox. Main change: - toolbox now includes JRE so those external dependencies are no longer needed. Testing: - nix-build -A tlaplusToolbox - ./result/bin/tla-toolbox - pdf generation - validation of a simple pluscal model	2019-08-04 09:27:13 -05:00
markuskowa	ad0ad1dc71	Merge pull request #65929 from r-ryantm/auto-update/gmsh ... gmsh: 4.4.0 -> 4.4.1	2019-08-04 15:14:29 +02:00
R. RyanTM	5f3787932f	gmsh: 4.4.0 -> 4.4.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions	2019-08-04 04:16:21 -07:00
WilliButz	3d4942c731	Merge pull request #65906 from r-ryantm/auto-update/eagle ... eagle: 9.4.1 -> 9.4.2	2019-08-04 12:51:29 +02:00
R. RyanTM	ea9bff4c0c	eagle: 9.4.1 -> 9.4.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/eagle/versions	2019-08-03 22:38:20 -07:00
Jake Waksbaum	3ab32ee8f6	framac: 18 -> 19 and update why3	2019-08-03 14:03:22 +00:00
Timo Kaufmann	f6a1fe64eb	sage: 8.9.beta3 -> 8.9.beta4	2019-08-02 23:50:45 +02:00
Frederik Rietdijk	d20a59d2e5	Merge master into staging-next	2019-08-02 23:27:18 +02:00
Timo Kaufmann	69d9700c61	sage: add list of past test failures	2019-08-02 18:09:18 +02:00
Timo Kaufmann	dac4719e0b	sage: add patch to debug transient issue	2019-08-02 18:09:15 +02:00
Jörg Thalheim	eddd2f88bc	verilog: 2019.03.27 -> 2019.08.1 (#65730) ... verilog: 2019.03.27 -> 2019.08.1	2019-08-02 11:20:17 +01:00
Daniel Schaefer	9c50ec6189	verilog: Add optional dependencies ... Increases the closure size by just 4MB.	2019-08-02 10:34:39 +02:00
Daniel Schaefer	8b3274178f	verilog: 2019.03.27 -> 2019.08.1 ... Fixes the build, see: https://github.com/steveicarus/iverilog/issues/247	2019-08-02 10:31:30 +02:00
Frederik Rietdijk	6f723b9bad	Merge master into staging-next	2019-08-02 09:18:37 +02:00
Robin Gloster	c6f1c9044b	Merge pull request #63282 from jbedo/strelka ... strelka: 2.9.5 -> 2.9.10	2019-08-01 23:44:58 +00:00
Timo Kaufmann	b884552c35	sage: 8.9.beta2 -> 8.9.beta3	2019-08-02 01:03:33 +02:00
Orivej Desh	32fbbc6f9b	Merge master into staging	2019-07-25 09:23:21 +00:00
Orivej Desh	b5d1d50aa9	google-gflags: move to aliases.nix ... google-gflags were renamed to gflags in 2012: https://github.com/gflags/gflags/#25-january-2012 gflags.name will be updated in staging.	2019-07-25 09:18:32 +00:00
R. RyanTM	a47962010d	cryptoverif: 2.01 -> 2.01pl1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/cryptoverif/versions	2019-07-23 19:32:45 -05:00
Guanpeng Xu	6988b0b929	mathematica: 11.3.0 -> 12.0.0 (#65031) ... * mathematica: archive version 11 * mathematica: 11.3.0 -> 12.0.0	2019-07-23 22:23:00 +02:00
worldofpeace	b1bc0645ea	gdk-pixbuf: rename from gdk_pixbuf	2019-07-22 18:50:57 -04:00
lewo	481bb449a2	Merge pull request #64897 from bzizou/est-sfs ... est-sfs: init at 2.03	2019-07-22 22:52:16 +02:00
Robin Gloster	dbfcfe495e	Merge pull request #65183 from r-ryantm/auto-update/scilab-bin ... scilab-bin: 6.0.1 -> 6.0.2	2019-07-22 17:49:05 +00:00
R. RyanTM	7251e3a2af	scilab-bin: 6.0.1 -> 6.0.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/scilab-bin/versions	2019-07-20 09:33:18 -07:00
Justin Bedo	11ed86d873	bedtools: 2.27.1 -> 2.28.0	2019-07-20 14:15:38 +02:00
avitex	44324bdd7c	caffe: add python package requirements	2019-07-20 13:17:17 +02:00
avitex	955ed925e5	caffe: fix python build	2019-07-20 13:17:17 +02:00
R. RyanTM	9a6f0ca8b7	stacks: 2.4 -> 2.41 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/stacks/versions	2019-07-17 09:34:10 +02:00
Ryan Mulligan	e7920cbcfc	Merge pull request #64862 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.20.2 -> 2.20.3	2019-07-16 20:04:43 -07:00
Bruno Bzeznik	9a22c8c697	est-sfs: init at 2.03	2019-07-16 13:55:59 +02:00
Frederik Rietdijk	a28a9ac156	Merge master into staging-next	2019-07-16 11:15:46 +02:00
R. RyanTM	b7fc14d8e6	picard-tools: 2.20.2 -> 2.20.3 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-07-15 21:46:51 -07:00
Frederik Rietdijk	800da69c8a	Merge pull request #64551 from jonringer/update-pyproj ... proj: 5.2.0 -> 6.1.1	2019-07-15 21:14:04 +02:00
Ryan Mulligan	6e03fdd341	Merge pull request #64811 from r-ryantm/auto-update/gp2c ... gp2c: 0.0.11pl1 -> 0.0.11pl2	2019-07-15 11:30:01 -05:00
R. RyanTM	3ef3712313	gp2c: 0.0.11pl1 -> 0.0.11pl2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions	2019-07-15 08:14:30 -07:00
Vladimír Čunát	3686036e02	Merge branch 'master' into staging-next ... Hydra nixpkgs: ?compare=1530372	2019-07-15 09:39:03 +02:00
Jonathan Ringer	e6223c022b	openspace: mark as broken ... Fails to build with GL error	2019-07-14 09:59:31 -07:00
Théo Zimmermann	3bc04b576a	coq: 8.10+beta1 -> 8.10+beta2	2019-07-14 14:58:49 +00:00
worldofpeace	7ce0cc0a6a	Merge pull request #64324 from jbedo/hisat2 ... hisat2: fix missing perl dependency	2019-07-13 13:21:11 -04:00
Frederik Rietdijk	54065ae20d	Merge master into staging-next	2019-07-13 09:45:40 +02:00
Daniël de Kok	3a4ba91b4a	fasttext: 0.2.0 -> 0.9.1 ... Changes: - Refactoring of internal classes. - Better unicode handling. https://github.com/facebookresearch/fastText/releases/tag/v0.9.1	2019-07-12 02:13:23 +02:00
Timo Kaufmann	56bd506e42	sage: 8.9.beta0 -> 8.9.beta2	2019-07-11 19:42:01 +02:00
Frederik Rietdijk	22cb7f25f2	Merge master into staging-next	2019-07-11 09:40:10 +02:00
Ryan Mulligan	508ae42a0f	treewide: fix redirect URLs	2019-07-10 12:52:51 -07:00
Frederik Rietdijk	79a03641d5	Merge staging-next into staging	2019-07-09 15:46:26 +02:00
Frederik Rietdijk	74c24385cb	Merge master into staging-next	2019-07-09 15:46:00 +02:00
Frederik Rietdijk	7cf5909fad	Merge staging-next into staging	2019-07-09 15:44:08 +02:00
Millian Poquet	0513ae77ff	simgrid: 3.22.2 -> 3.23	2019-07-08 14:00:14 +02:00
Vladimír Čunát	0746c4dbb4	Merge branch 'master' into staging-next ... There are several thousand rebuilds from master already. Hydra nixpkgs: ?compare=1528940	2019-07-06 13:44:40 +02:00
Thomas Tuegel	56d5963382	Merge pull request #54525 from ttuegel/feature/qt-5/wrap-qt-apps ... Wrap Qt applications	2019-07-05 14:38:10 -05:00
Thomas Tuegel	51d78034a1	wrapQtAppsHook: Remove ad hoc Qt wrappers	2019-07-05 10:42:08 -05:00
Peter Simons	ec662c5654	R: 3.6.0 -> 3.6.1	2019-07-05 09:05:22 +00:00
Justin Bedo	d2d449cea5	hisat2: fix missing perl dependency	2019-07-05 10:29:51 +10:00
markuskowa	8f34a8c368	Merge pull request #64291 from angus-g/gmsh-4.4.0 ... gmsh: 4.3.0 -> 4.4.0	2019-07-04 22:17:46 +02:00
Angus Gibson	8c26b71dc8	gmsh: 4.3.0 -> 4.4.0	2019-07-04 19:21:54 +10:00
Dmitry Kalinkin	3ff069d029	Merge pull request #64120 from smaret/gildas-201907a ... gildas: 20190601_b -> 20190701_a	2019-07-03 17:28:54 -04:00
Daiderd Jordan	da7bcec42f	root: remove cf-private	2019-07-03 22:20:22 +02:00
Frederik Rietdijk	25a77b7210	Merge staging-next into staging	2019-07-03 08:59:42 +02:00
R. RyanTM	4bf65cf0fa	verilator: 4.014 -> 4.016 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/verilator/versions	2019-07-03 08:30:01 +02:00
Timo Kaufmann	924c321e8a	sage: 8.8 -> 8.9.beta0	2019-07-02 23:02:36 +02:00
Sébastien Maret	08ee08435e	gildas: 20190601_b -> 20190701_a	2019-07-02 11:04:40 +02:00
R. RyanTM	526f12b886	gap: 4.10.1 -> 4.10.2 (#64026) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gap/versions	2019-07-01 20:06:42 +02:00
worldofpeace	3f4a353737	treewide: use dontUnpack	2019-07-01 04:23:51 -04:00
Maximilian Bosch	1b019ba91d	stellarium: 0.19.0 -> 0.19.1 ... https://github.com/Stellarium/stellarium/releases/tag/v0.19.1	2019-06-28 23:24:11 +02:00
Timo Kaufmann	66fa457ba1	Merge pull request #59989 from timokau/sage-8.8 ... sage: 8.7 -> 8.8	2019-06-27 23:30:12 +02:00
Timo Kaufmann	5b2db39c49	sage: 8.8.rc2 -> 8.8	2019-06-27 22:05:30 +02:00
Timo Kaufmann	e7d4386e0e	sage: 8.8.rc1 -> 8.8.rc2	2019-06-27 22:03:00 +02:00
Timo Kaufmann	218fd843a3	sage: 8.8.rc0 -> 8.8.rc1	2019-06-27 22:03:00 +02:00
Timo Kaufmann	409bee28b6	sage: 8.8.beta7 -> 8.8.rc0	2019-06-27 22:03:00 +02:00
Timo Kaufmann	c76e8fa86e	sage: 8.8.beta6 -> 8.8.beta7	2019-06-27 22:02:57 +02:00
Timo Kaufmann	9f434d7080	sage: 8.8.beta5 -> 8.8.beta6	2019-06-27 22:01:40 +02:00
Timo Kaufmann	325a5037bf	sage: 8.8.beta4 -> 8.8.beta5	2019-06-27 22:01:37 +02:00
Timo Kaufmann	240d4c31d2	sage: 8.8.beta3 -> 8.8.beta4	2019-06-27 21:57:33 +02:00
Timo Kaufmann	608948e3e9	sage: 8.8.beta2 -> 8.8.beta3	2019-06-27 21:57:33 +02:00
Timo Kaufmann	21c1ab6776	sage: 8.7 -> 8.8.beta2	2019-06-27 21:57:27 +02:00
markuskowa	a07d045b00	Merge pull request #63488 from jbedo/octopus ... octopus: init 0.6.3-beta	2019-06-27 12:43:25 +02:00
Dmitry Kalinkin	bff22431b5	Merge pull request #62845 from royneary/nim-0.20.0 ... nim: 0.19.4 -> 0.20.0	2019-06-26 13:00:50 -04:00
Nikolay Amiantov	3dd7d72e43	fast-downward: init at 2019-05-13	2019-06-24 15:59:57 +03:00
Nikolay Amiantov	a92611508f	cplex: add library info	2019-06-24 15:57:22 +03:00
Nikolay Amiantov	10e1475a79	gurobi: add library suffix	2019-06-24 15:57:22 +03:00
R. RyanTM	3e6ef3e9ef	eagle: 9.3.2 -> 9.4.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/eagle/versions	2019-06-23 14:57:04 +02:00
royneary	d162165350	mosdepth: 0.2.3 -> 0.2.6	2019-06-22 22:41:59 +02:00
Timo Kaufmann	ac28607a03	Merge pull request #63560 from timokau/sage-threejs-r105 ... sage: fix threejs r105	2019-06-20 14:55:13 +02:00
markuskowa	3947441cb9	Merge pull request #63262 from r-ryantm/auto-update/gromacs ... gromacs: 2019.2 -> 2019.3	2019-06-20 14:26:02 +02:00
Timo Kaufmann	9955657209	sage: fix online threejs	2019-06-20 12:50:00 +02:00
Timo Kaufmann	2d78d928cd	sage: backport threejs r100 compatibility ... https://github.com/NixOS/nixpkgs/issues/62736#issuecomment-503757429	2019-06-20 12:50:00 +02:00
Justin Bedo	b8b71aaaf9	octopus: init 0.6.3-beta	2019-06-19 23:09:33 +10:00
Linus Heckemann	32a992af8b	Merge pull request #63479 from lheckemann/dcm2niix ... dcm2niix: 1.0.20170130 -> 1.0.20190410	2019-06-19 12:05:37 +02:00
Vincent Laporte	1f2a3a2df2	gappa: 1.2 -> 1.3.5	2019-06-19 09:24:34 +00:00
Linus Heckemann	2458209c3e	dcm2niix: 1.0.20170130 -> 1.0.20190410	2019-06-18 22:12:40 +02:00
Timo Kaufmann	6e74109b13	sage: fix threejs integration (#63375) ... Before this it didn't find the correct files. Unfortunately, the interactive parts of sage are hard to test automatically.	2019-06-18 11:50:41 +02:00
R. RyanTM	3775ef0acd	jmol: 14.29.42 -> 14.29.46 (#63277) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/jmol/versions	2019-06-17 20:56:11 +02:00
Justin Bedo	1be8ba08d3	strelka: 2.9.5 -> 2.9.10	2019-06-17 16:09:25 +10:00
Franz Pletz	394bee72db	ants: fix build with gcc8	2019-06-17 07:26:00 +02:00
R. RyanTM	0c54098340	gromacs: 2019.2 -> 2019.3 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gromacs/versions	2019-06-16 18:22:05 -07:00
volth	f3282c8d1e	treewide: remove unused variables (#63177) ... * treewide: remove unused variables * making ofborg happy	2019-06-16 19:59:05 +00:00
Bruno Bzeznik	aafffb2614	trimal: init at 1.4.1	2019-06-14 16:31:39 +02:00
Aaron Andersen	4cb64dba39	Merge pull request #58362 from bzizou/cd-hit ... cd-hit: init at 4.8.1	2019-06-13 20:39:54 -04:00
Bruno Bzeznik	9fbf8625f1	cd-hit: init at 4.8.1	2019-06-13 14:35:13 +02:00
markuskowa	ca099915f7	Merge pull request #62976 from markuskowa/upd-octopus ... octopus: 8.4 -> 9.0	2019-06-12 09:36:42 +02:00
Markus Kowalewski	4df1e91b31	octopus: 8.4 -> 9.0	2019-06-11 13:02:54 +02:00
Will Dietz	e397f4716c	z3: 4.8.4 -> 4.8.5 ... * drop included patch * pname-ify	2019-06-10 17:55:26 -07:00
Will Dietz	94774dad00	pulseview: 0.4.0 -> 0.4.1 ... https://sigrok.org/gitweb/?p=pulseview.git;a=blob;f=NEWS;h=69c7ac5d418bbae896906b8c6b64c6719b1912db;hb=05a4de8abd5810cf8219077259ffa44adb08043e	2019-06-10 23:20:24 +02:00
Robert Scott	48c8756157	pythonPackages.neuron: restrict to x86 platforms	2019-06-09 12:18:58 +02:00
Robert Scott	e0aec554eb	pythonPackages.neuron: fix for darwin ... un-compensate for some of the darwin quirks the neuron source is expecting	2019-06-09 12:18:58 +02:00
R. RyanTM	5bbc9be100	gmsh: 4.2.3 -> 4.3.0 (#62420) ... * gmsh: 4.2.3 -> 4.3.0 Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions * gmsh: move cmake to nativeBuildInputs	2019-06-07 18:01:57 +02:00
R. RyanTM	8ebf0eefbe	star: 2.7.0f -> 2.7.1a (#62577) ... * star: 2.7.0f -> 2.7.1a Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/star/versions * star: cleanup	2019-06-06 18:10:34 +02:00
Matthew Bauer	d598eca41e	Merge pull request #62752 from matthewbauer/darwin-fixes100 ... Fixes for x86_64-darwin failures on Hydra	2019-06-06 09:46:41 -04:00
Matthew Bauer	441485af66	iv: only use patchelf on linux	2019-06-05 23:42:58 -04:00
Matthew Bauer	693a4efa4c	Merge pull request #53013 from wucke13/betaflight-configurator-naive ... betaflight-configurator: init at 10.5.1	2019-06-05 10:08:29 -04:00
worldofpeace	1d66d62bbc	Merge pull request #62430 from r-ryantm/auto-update/gtkwave ... gtkwave: 3.3.100 -> 3.3.101	2019-06-04 23:12:58 -04:00
Renaud	e7e1ae542c	Merge pull request #62499 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.19.2 -> 2.20.2	2019-06-05 00:05:59 +02:00
R. RyanTM	df3cdc29be	quantum-espresso: 6.4 -> 6.4.1 (#62556)	2019-06-04 19:24:04 +00:00
Sébastien Maret	39a3ad3dce	gildas: 20190501_a -> 20190601_b	2019-06-03 21:07:00 +02:00
Nikolay Amiantov	1deb406ac2	mxnet: 1.2.1 -> 1.4.1	2019-06-02 21:50:06 +03:00
Nikolay Amiantov	1260b05279	cntk: 2.4 -> 2.7 ... Restrict platforms to x86_64-linux.	2019-06-02 19:40:49 +03:00
R. RyanTM	2998ac28b4	picard-tools: 2.19.2 -> 2.20.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-06-02 05:31:59 -07:00
markuskowa	5e45835011	Merge pull request #62448 from r-ryantm/auto-update/jmol ... jmol: 14.29.40 -> 14.29.42	2019-06-02 11:46:45 +02:00
R. RyanTM	e20c69619f	jmol: 14.29.40 -> 14.29.42 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/jmol/versions	2019-06-01 17:19:25 -07:00
R. RyanTM	62e667f6ab	gtkwave: 3.3.100 -> 3.3.101 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gtkwave/versions	2019-06-01 13:31:03 -07:00
worldofpeace	b33513d237	Merge pull request #62378 from r-ryantm/auto-update/clp ... clp: 1.17.1 -> 1.17.2	2019-06-01 12:10:36 -04:00
worldofpeace	62c68b8a72	clp: update homepage	2019-06-01 12:08:20 -04:00
R. RyanTM	6f2d2818b0	cryptoverif: 2.00 -> 2.01 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/cryptoverif/versions	2019-06-01 10:51:25 -05:00
Alyssa Ross	062210bdff	treewide: update cargoSha256 hashes for cargo-vendor upgrade ... A recent upgrade of cargo-vendor changed its output slightly, which broke all cargoSha256 hashes in nixpkgs. See https://github.com/NixOS/nixpkgs/issues/60668 for more information. Since then, a few hashes have been fixed in master by hand, but there were a lot still to do, so I did all of the ones left over with some scripts I wrote. The one hash I wasn’t able to update was habitat's, because it’s currently broken and the build doesn’t get far enough to produce a hash anyway.	2019-06-01 15:17:52 +00:00
R. RyanTM	332c600f7d	clp: 1.17.1 -> 1.17.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/clp/versions	2019-06-01 04:05:51 -07:00
wucke13	fd121cdd88	Added makeWrapper suggestion	2019-05-31 12:51:51 +02:00
wucke13	db3a1d8adb	Update pkgs/applications/science/robotics/betaflight-configurator/default.nix ... Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>	2019-05-31 12:51:51 +02:00
wucke13	5fcf9f5559	Update pkgs/applications/science/robotics/betaflight-configurator/default.nix ... Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>	2019-05-31 12:51:51 +02:00
wucke13	170009b123	betaflight-configurator: init at 10.5.1	2019-05-31 12:51:51 +02:00
Vincent Laporte	57c3da07eb	coq_8_9: 8.9.0 -> 8.9.1	2019-05-29 11:24:45 +02:00
Will Dietz	368f870219	libqalculate,qalculate-gtk: 3.1.0 -> 3.2.0	2019-05-28 19:14:03 -05:00
Jörg Thalheim	10ddd34921	verilator: 4.012 -> 4.014 (#62013) ... verilator: 4.012 -> 4.014	2019-05-25 09:16:58 +01:00
Dmitry Kalinkin	785204f5a1	Merge pull request #61895 from smaret/gildas-update ... gildas: 20190401_a -> 20190501_a	2019-05-24 17:48:25 -04:00
R. RyanTM	66b4fd678c	verilator: 4.012 -> 4.014 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/verilator/versions	2019-05-24 09:19:04 -07:00
Renaud	70a494a486	Merge pull request #61798 from bobvanderlinden/aliza-1.48.10 ... aliza: 1.36.3 -> 1.48.10	2019-05-24 17:23:51 +02:00
Ryan Mulligan	34e8f3b119	Merge pull request #61997 from r-ryantm/auto-update/stacks ... stacks: 2.3e -> 2.4	2019-05-24 06:31:43 -07:00
R. RyanTM	f4a20199d2	stacks: 2.3e -> 2.4 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/stacks/versions	2019-05-24 03:50:06 -07:00
Sébastien Maret	cadd88967f	gildas: 20190401_a -> 20190501_a	2019-05-24 08:11:21 +02:00
Gabriel Ebner	cca0aeeb68	spyder: convert to python modules	2019-05-21 18:23:07 +02:00
Bob van der Linden	c8571f6a2c	aliza: ? -> 1.48.10	2019-05-21 11:31:38 +02:00
Cyril Cohen	d16a78b512	several fixes in coq and coqPackages.mathcomp (and extras)	2019-05-21 08:55:38 +02:00
markuskowa	82ea400e46	Merge pull request #61630 from markuskowa/upd-molden ... molden: 5.9.5 -> 6.1	2019-05-18 20:13:57 +02:00
Robin Gloster	43aa2e30c3	Merge pull request #58369 from bzizou/clustalo ... clustal-omega: init at 1.2.4	2019-05-18 10:16:43 +00:00
Robin Gloster	6cf583cf2f	Merge pull request #60406 from JohnAZoidberg/remove-isnull ... treewide: Remove usage of isNull	2019-05-18 09:36:24 +00:00
Markus Kowalewski	dce18eefd1	molden: 5.9.5 -> 6.1	2019-05-17 13:07:53 +02:00
Aaron Andersen	8b3350cf15	Merge pull request #61462 from mpoquet/simgrid-3.21-to-3.22.2 ... simgrid: 3.21 -> 3.22.2	2019-05-16 12:04:44 -04:00
Will Dietz	51202e96fa	nasc: 0.5.2 -> 0.5.4 ... https://github.com/parnold-x/nasc/releases/tag/0.5.4 https://github.com/parnold-x/nasc/releases/tag/0.5.3	2019-05-15 16:59:26 -05:00
Millian Poquet	13aa449bab	simgrid: remove unneeded 'name' definition	2019-05-15 12:35:12 +02:00
Vincent Laporte	b72daf7117	coq: init at 8.10+β1	2019-05-15 10:30:03 +02:00
Vincent Laporte	1ce94fad33	coq: make “coq-version” more general	2019-05-15 10:30:03 +02:00
Millian Poquet	00fc5bd08f	simgrid: override checkPhase -> preCheck ... This commit changes how failing tests are ignored. - Previously, the whole checkPhase was overridden. - Now, preCheck generates a ctest ignore file. ctest doc: https://gitlab.kitware.com/cmake/community/wikis/doc/ctest/Testing-With-CTest#customizing-ctest	2019-05-14 18:27:51 +02:00
Millian Poquet	aa29b79e8a	simgrid: fetchgit -> fetchFromGitLab	2019-05-13 21:26:09 +02:00
Millian Poquet	c7ab2b9499	simgrid: 3.21 -> 3.22.2 ... - GitHub -> Framagit (SimGrid main repo has moved) - Test binaries must now be explicitly compiled (`make tests`) - Fix broken documentation link	2019-05-13 18:58:27 +02:00
Timo Kaufmann	ecfc35e9a6	pynac: 0.7.24 -> 0.7.25 (#61458)	2019-05-13 17:11:13 +02:00
Renaud	bf4728cb40	eggnog-mapper: fix patch URL and hash	2019-05-13 16:00:07 +02:00
R. RyanTM	af6a39460a	cbc: 2.9.9 -> 2.10.2 (#58016) ... * cbc: 2.9.9 -> 2.10.0 Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/cbc/versions * cbc: 2.10.0 -> 2.10.2 + mark as broken on aarch64 (fails to build)	2019-05-12 23:46:18 +02:00
Sebastien Bourdeauducq	992150d37b	symbiyosys: fix path to bash	2019-05-12 20:00:10 +02:00
Renaud	d081baa4a5	Merge pull request #61335 from r-ryantm/auto-update/minimap2 ... minimap2: 2.16 -> 2.17	2019-05-12 17:27:28 +02:00
R. RyanTM	ad5676f8b9	minimap2: 2.16 -> 2.17 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/minimap2/versions	2019-05-11 21:12:42 -07:00
wucke13	a670a8dbb1	apmplanner-2: 2.0.26 -> 2.0.27-rc1	2019-05-11 19:15:10 +02:00
Timo Kaufmann	3814d7b14a	givaro: 4.0.4 -> 4.1.0, fflas-ffpack: 2.3.2 -> 2.4.0, linbox: 1.5.2 -> 1.6.0 (#61285) ... The three packages are interdependent and need to be updated together, like the main contributor did for sage: https://trac.sagemath.org/ticket/24214	2019-05-11 16:09:07 +02:00
Michael Raskin	7252364dfa	tptp: switch to new base URL for source tarball	2019-05-09 22:57:59 +02:00
Michael Raskin	a8c4b37063	vampire: switch off the fragile fetchSubmodules/leaveDotGit	2019-05-09 22:57:59 +02:00
Renaud	2fb1b3156f	Merge pull request #60932 from c0bw3b/patches-cleanup ... [treewide] delete (some) unused patches	2019-05-07 23:34:04 +02:00
Frederik Rietdijk	a80982b4c9	Merge staging-next into master	2019-05-07 19:29:06 +02:00
Frederik Rietdijk	0196d8f11c	Merge master into staging-next	2019-05-07 09:00:06 +02:00
Mario Rodas	e47dd1bb34	cedille: fix hash	2019-05-05 20:47:29 -05:00
Michael Raskin	7770495cd7	Merge pull request #59148 from volth/gcc.arch.v3 ... compilation for particular x86_64 architecture	2019-05-05 19:12:12 +00:00
Daniël de Kok	f029f8c5ad	fasttext: init at 0.2.0	2019-05-05 08:28:44 +02:00
c0bw3b	9cb260d091	[treewide] delete unused patches	2019-05-04 19:52:24 +02:00
Frederik Rietdijk	155c9d8e18	Merge master into staging-next	2019-05-02 08:43:14 +02:00
Renaud	2f76c9b7e8	Merge pull request #60694 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.19.0 -> 2.19.2	2019-05-02 08:06:35 +02:00
R. RyanTM	d41da19c65	picard-tools: 2.19.0 -> 2.19.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-05-01 17:49:08 -07:00
Gabriel Ebner	ebbeae56bd	kicad: 5.0.2 -> 5.1.2 (#60611) ... kicad: 5.0.2 -> 5.1.2	2019-05-01 12:21:02 +02:00
Frederik Rietdijk	f137783927	Merge master into staging-next	2019-05-01 11:45:46 +02:00
R. RyanTM	cc82f81d9a	bowtie2: 2.3.5 -> 2.3.5.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/bowtie2/versions	2019-05-01 11:17:16 +02:00
R. RyanTM	dbfdaf048a	gromacs: 2019.1 -> 2019.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gromacs/versions	2019-05-01 11:14:16 +02:00
Gabriel Ebner	9370c1afdb	kicad: 5.0.2 -> 5.1.2	2019-05-01 11:13:14 +02:00
R. RyanTM	06aa3d6f60	jmol: 14.29.36 -> 14.29.40 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/jmol/versions	2019-05-01 11:10:18 +02:00
Gabriel Ebner	e62576817f	Merge branch 'auto-update/libqalculate'	2019-05-01 10:28:38 +02:00
Gabriel Ebner	1d5a0ffbfc	qalculate-gtk: 3.0.0 -> 3.1.0	2019-05-01 10:28:04 +02:00
Ryan Mulligan	14965968bd	Merge pull request #60550 from r-ryantm/auto-update/ginac ... ginac: 1.7.5 -> 1.7.6	2019-04-30 19:27:22 -07:00
R. RyanTM	1d663a6b2e	ginac: 1.7.5 -> 1.7.6 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/ginac/versions	2019-04-30 15:56:23 -07:00
Michael Raskin	9d807a768a	Merge pull request #60520 from r-ryantm/auto-update/eprover ... eprover: 2.2 -> 2.3	2019-04-30 19:16:59 +00:00
R. RyanTM	62cd9ccca4	eprover: 2.2 -> 2.3 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/eprover/versions	2019-04-30 10:05:27 -07:00
Gabriel Ebner	a35df16d5f	kicad: fix #49089 by adding libraries files (#57452) ... kicad: fix #49089 by adding libraries files	2019-04-30 17:38:16 +02:00
volth	5ad79dc4bb	compilation for particular x86_64 architecture	2019-04-30 14:28:04 +00:00
Matthew Bauer	a3990c9f6d	Merge pull request #60447 from matthewbauer/macos-10-12-fixups ... Fixup from macos-10-12 branch	2019-04-30 10:06:45 -04:00
Frederik Rietdijk	3462fe27d9	Merge staging-next into staging	2019-04-30 15:52:19 +02:00
Matthew Bauer	74c784a79c	treewide: make -Wno-error flags clang-only ... In 724e833ea2, I was a little too aggressive in enabling these flags. Many don’t work in gcc, and we should probably avoid settings them widely. This makes those flags optional on isclang	2019-04-29 21:34:24 -04:00
Mario Rodas	7a965dcdab	cedille: 1.0.0 -> 1.1.1 (#60307)	2019-04-29 21:02:44 +02:00
Daniel Schaefer	786f02f7a4	treewide: Remove usage of isNull ... isNull "is deprecated; just write e == null instead" says the Nix manual	2019-04-29 14:05:50 +02:00
Timo Kaufmann	6dabc28cd0	sage: add compatibility for R 3.6.0 ... The random number generator seems to have changed. Because of this, a trivial test adjustment is needed.	2019-04-29 13:37:07 +02:00
Alex Branham	4264ad4c2b	R: 3.5.3 -> 3.6.0 ... The patch is necessary for the test suite to pass without errors. The fix has already been made upstream but didn't make it into the 3.6.0 release. Closes https://github.com/NixOS/nixpkgs/pull/60273.	2019-04-29 13:35:21 +02:00
Bruno Bzeznik	83886b3d91	aragorn: init at 1.2.38 (#58354)	2019-04-29 07:18:03 -04:00
Ben	535c38dd73	GeoGebra: 472 -> 535 (#60272) ... * Update GeoGebra * Update default.nix	2019-04-29 11:25:37 +02:00
Timo Kaufmann	31709b611f	R: add timokau as a maintainer ... I'm interested in R as a dependency for sage. R changes are likely to impact sage, so I'd like to get notified on those changes.	2019-04-28 13:20:47 +02:00
Matthew Bauer	87944c3125	Merge pull request #56744 from matthewbauer/macos-10-12 ... Update macOS to 10.12	2019-04-26 22:20:03 -04:00
Matthew Bauer	724e833ea2	treewide: disable -Werror for llvm 7 ... Some of these have errors on newest llvm. It’s easiest to just add -Wno-error in these cases.	2019-04-26 21:55:04 -04:00
Renaud	5560607988	Merge pull request #59484 from r-ryantm/auto-update/eagle ... eagle: 9.3.1 -> 9.3.2	2019-04-25 23:32:25 +02:00
Renaud	71c6157fd7	Merge pull request #58534 from bzizou/sumatools.dev ... sumatools: init at 1.0.34	2019-04-24 22:34:35 +02:00
Renaud	9f26d537e8	Merge pull request #59516 from r-ryantm/auto-update/gmsh ... gmsh: 4.2.2 -> 4.2.3	2019-04-24 20:40:56 +02:00
worldofpeace	c8c0bd1fea	Merge pull request #51285 from expipiplus1/fped ... fped: init at unstable-2017-05-11	2019-04-23 06:52:50 -04:00
markuskowa	d0e70ac2d3	Merge pull request #60010 from JohnAZoidberg/https-urls ... HTTPS urls	2019-04-22 23:37:07 +02:00
Austin Seipp	b0fea1dc9c	verilog: 2018.12.15 -> 2019.03.27, parallel build ... Signed-off-by: Austin Seipp <aseipp@pobox.com>	2019-04-22 14:27:45 -05:00
Austin Seipp	fe8eb566b5	symbiyosys: 2019.03.28 -> 2019.04.18 ... Signed-off-by: Austin Seipp <aseipp@pobox.com>	2019-04-22 14:27:45 -05:00
Daniel Schaefer	bac4d95aa2	treewide: Change URLs to HTTPS ... Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them if there's actual content. Inspired by https://github.com/NixOS/nixpkgs/issues/60004	2019-04-22 10:19:54 +02:00
Timo Kaufmann	512097dece	Merge pull request #59921 from timokau/gap-update ... gap: 4.10.0 -> 4.10.1	2019-04-20 13:17:04 +02:00
R. RyanTM	0dc3184871	picard-tools: 2.18.27 -> 2.19.0 (#59634) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions	2019-04-20 13:15:40 +02:00
Timo Kaufmann	9c7f774a39	gap: mark as broken on darwin ... Has been failing to build for a while.	2019-04-20 12:36:11 +02:00
Timo Kaufmann	af6739fdd7	gap: 4.10.0 -> 4.10.1	2019-04-20 09:54:27 +02:00
Aaron Andersen	77dbfa3a55	Merge pull request #53803 from jfrankenau/init-groove ... groove: init at 5.7.4	2019-04-19 20:27:18 -04:00
Aaron Andersen	11cf1a282d	Merge pull request #58377 from bzizou/exonerate ... exonerate: init at 2.4.0	2019-04-19 13:25:49 -04:00
Mario Rodas	f84a7b3828	Merge pull request #59834 from luispedro/add_prodigal ... Prodigal: init at 2.6.3	2019-04-19 09:50:03 -05:00
Bruno Bzeznik	6a8c9bff8f	exonerate: init at 2.4.0	2019-04-19 14:58:57 +02:00
Bruno Bzeznik	90b4796c60	sumatools: init at 1.0.34	2019-04-19 14:43:40 +02:00
Johannes Frankenau	e7f021ca93	groove: init at 5.7.4	2019-04-19 13:34:30 +02:00
Luis Pedro Coelho	3fc55eec05	Prodigal: init at 2.6.3	2019-04-19 08:38:14 +02:00
Timo Kaufmann	49b8efcb84	sage: 8.6 -> 8.7 ... https://groups.google.com/forum/#!topic/sage-release/3m8PV9JkFro	2019-04-17 22:44:32 +02:00
Timo Kaufmann	e0e5445667	sage: fix another transient sig_on bug ... Caused a test failure on hydra, backporting upstream fix.	2019-04-17 19:58:07 +02:00
R. RyanTM	d11731130d	star: 2.7.0c -> 2.7.0f ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/star/versions	2019-04-16 18:30:49 +02:00
Michael Raskin	3d3a415f24	petrinizer: init at 0.9.1.1	2019-04-16 15:11:03 +02:00
Austin Seipp	bb27856a5c	Merge pull request #59522 from r-ryantm/auto-update/gtkwave ... gtkwave: 3.3.99 -> 3.3.100	2019-04-16 02:12:25 -05:00
Matthew Bauer	f475aeaf29	Merge pull request #59535 from matthewbauer/homepage-fixes ... treewide: update homepages to https where available	2019-04-15 20:47:30 -04:00
Matthew Bauer	290a5d916e	treewide: update homepages to https where available ... Based on "problems" from repology: https://repology.org/repository/nix_unstable/problems Mostly simple changes to reflect redirects.	2019-04-15 10:10:05 -04:00
R. RyanTM	c906798997	jmol: 14.29.32 -> 14.29.36 (#59546) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/jmol/versions	2019-04-15 12:02:41 +02:00
Austin Seipp	a5add1e623	symbiyosys: 2018.12.09 -> 2019.03.28 ... Signed-off-by: Austin Seipp <aseipp@pobox.com>	2019-04-15 00:17:54 -05:00
Luis Pedro Coelho	13a1f2c296	eggnog-mapper: init at 1.0.3 (#58905)	2019-04-14 17:22:47 -07:00
R. RyanTM	8a4ad20ed0	gtkwave: 3.3.99 -> 3.3.100 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gtkwave/versions	2019-04-14 14:47:32 -07:00
R. RyanTM	00d17e36ea	gmsh: 4.2.2 -> 4.2.3 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gmsh/versions	2019-04-14 13:15:32 -07:00
Timo Kaufmann	62c288ec20	python.pkgs.sympy: 1.3 -> 1.4 (#59482)	2019-04-14 17:52:03 +02:00
Michael Raskin	796050fedd	openmvs: mark as broken	2019-04-14 17:45:21 +02:00
R. RyanTM	c3a9b4e1fd	eagle: 9.3.1 -> 9.3.2 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/eagle/versions	2019-04-14 07:47:26 -07:00
markuskowa	87f595a1f0	Merge pull request #56615 from r-ryantm/auto-update/clp ... clp: 1.16.11 -> 1.17.0	2019-04-14 12:05:32 +02:00
Markus Kowalewski	19dfffff3c	clp: restrict to x86_64-linux + darwin	2019-04-14 00:17:25 +02:00
Markus Kowalewski	e879991e1b	clp: 1.17.0 -> 1.17.11	2019-04-14 00:04:06 +02:00
Joe Hermaszewski	0e2d27f5af	fped: init at 2017-05-11	2019-04-13 13:36:46 +08:00
Julien Dehos	a13f5d0da1	mxnet: fix cuda support enabled build (#48781)	2019-04-12 10:31:22 +00:00
Frederik Rietdijk	993e2b4ec2	Merge pull request #59098 from NixOS/staging-next ... Staging next	2019-04-11 18:23:14 +02:00
Frederik Rietdijk	230c67f43b	Merge master into staging-next	2019-04-11 07:50:23 +02:00
Dmitry Kalinkin	c321b64b3f	snakemake: 5.2.2 -> 5.4.4	2019-04-10 14:18:26 -04:00
xeji	cc118b4426	Merge pull request #58676 from smaret/gildas-update ... gildas: update to 20190401_a	2019-04-10 14:30:50 +02:00
Frederik Rietdijk	d108b49168	Merge master into staging-next	2019-04-09 16:38:35 +02:00
Vladimír Čunát	f7ddff5c6d	R: fix regression from commit cbade453 #58989 ... Normally the directory is created in fixup phase.	2019-04-07 17:38:45 +02:00
Frederik Rietdijk	7f7da0a16f	Merge master into staging-next	2019-04-07 15:14:52 +02:00
rhokue	cbade453ac	R: explicitly declare which as a run-time dependency ... Fixes https://github.com/NixOS/nixpkgs/issues/58963. Closes https://github.com/NixOS/nixpkgs/pull/58989.	2019-04-07 11:12:43 +02:00
Frederik Rietdijk	4a125f6b20	Merge master into staging-next	2019-04-07 08:33:41 +02:00
Timo Kaufmann	ceede33ddf	python.pkgs.cypari2: 2.0.3 -> 2.1.0 (#59085)	2019-04-06 21:46:13 +00:00
Pascal Wittmann	cfb6ade58c	Merge pull request #58931 from bzizou/migrate ... migrate: init at 3.7.2	2019-04-06 14:23:50 +02:00
Vincent Laporte	50a03f8632	hol_light: 2018-09-30 -> 2019-03-27	2019-04-06 11:03:29 +02:00
Timo Kaufmann	6662fbc822	Merge pull request #58961 from timokau/nauty-features ... nauty: disable cpu feature detection	2019-04-05 13:12:05 +00:00
Jan Tojnar	cb1a20499a	Merge branch 'master' into staging	2019-04-05 11:37:15 +02:00
Bruno Bzeznik	0b03f44c2f	migrate: init at 3.7.2	2019-04-05 09:01:36 +02:00
Timo Kaufmann	7f22a42976	nauty: disable cpu feature detection	2019-04-04 14:54:55 +02:00
Timo Kaufmann	15045e6233	nauty: add timokau as a maintainer ... I'm interested in this package as a sage dependency.	2019-04-04 14:54:31 +02:00
Timo Kaufmann	5880c449dd	nauty: small refactoring	2019-04-04 14:54:05 +02:00
R. RyanTM	9f68f2a7dc	verilator: 4.010 -> 4.012 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/verilator/versions	2019-04-03 13:43:11 -05:00
markuskowa	e2ce5fd7fe	Merge pull request #58860 from r-ryantm/auto-update/quantum-espresso ... quantum-espresso: 6.3 -> 6.4	2019-04-03 15:42:40 +02:00
Markus Kowalewski	c109aaa5cb	quantum-espresso: remove outdated makefile fix	2019-04-03 15:00:17 +02:00
markuskowa	126e1f8fd0	Merge pull request #58538 from bzizou/stacks ... stacks: init at 2.3e	2019-04-03 14:41:00 +02:00
Bruno Bzeznik	e7899d2a00	stacks: init at 2.3e	2019-04-03 14:01:32 +02:00
R. RyanTM	882247fc3f	quantum-espresso: 6.3 -> 6.4 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/quantum-espresso/versions	2019-04-02 15:30:36 -07:00
Timo Kaufmann	69555825f8	eclib: 20180815 -> 20190226 (#58801) ... Needs a sage patch, see https://trac.sagemath.org/ticket/27360.	2019-04-02 15:39:20 +00:00
Sébastien Maret	806a3fa2e6	gildas: 20190301_b -> 20190401_a	2019-04-02 09:04:39 +02:00
R. RyanTM	5f4e5553bc	jmol: 14.29.31 -> 14.29.32 (#58698) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/jmol/versions	2019-04-01 20:12:53 +00:00
John Ericson	4ccb74011f	Merge commit '18aa59b0f26fc707e7313f8467e67159e61600c2' from master into staging ... There was one conflict in the NixOS manual; I checked that it still built after resolving it.	2019-04-01 00:40:03 -04:00
markuskowa	c637aeff19	Merge pull request #58541 from luispedro/add_megahit ... megahit: init at 1.1.4	2019-03-31 12:51:59 +02:00
Luis Pedro Coelho	bf48451959	megahit: init at 1.1.4 ... This is widely used in bioinformatics for assembling genomes & metagenomes	2019-03-31 05:56:14 +02:00
Dmitry Kalinkin	ea757ac59f	Merge pull request #58108 from veprbl/pr/root5_fix ... root5: fix build	2019-03-30 22:36:23 -04:00
R. RyanTM	893abe12e8	bowtie2: 2.3.4.3 -> 2.3.5 (#58014) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/bowtie2/versions	2019-03-31 00:37:38 +01:00
Silvan Mosberger	aadb1cbe26	Merge pull request #58494 from markuskowa/upd-octopus ... octopus: 8.3 -> 8.4	2019-03-29 20:43:28 +01:00
markuskowa	7701fd7603	Merge pull request #58097 from r-ryantm/auto-update/ginac ... ginac: 1.7.4 -> 1.7.5	2019-03-29 20:27:39 +01:00
Silvan Mosberger	030b845413	Merge pull request #58492 from markuskowa/upd-molden ... molden: 5.9.3 -> 5.9.5	2019-03-29 20:16:08 +01:00
geistesk	5e6273df68	stellarium: 0.18.3 -> 0.19.0	2019-03-28 21:21:54 +01:00
markuskowa	403aa2dfed	Merge pull request #58180 from luzpaz/gmsh4.2.2 ... gmsh 4.2.1->4.2.2	2019-03-28 18:11:58 +01:00
Markus Kowalewski	3c19324e2a	octopus: 8.3 -> 8.4	2019-03-28 18:00:41 +01:00
Markus Kowalewski	6ea9c0243b	molden: 5.9.3 -> 5.9.5	2019-03-28 17:39:15 +01:00
R. RyanTM	2ce544a8b1	minimap2: 2.15 -> 2.16 (#57319) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/minimap2/versions	2019-03-27 23:25:52 +01:00
R. RyanTM	1b73fd1954	paml: 4.9h -> 4.9i (#57354) ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/paml/versions	2019-03-27 15:44:21 +01:00
Bruno Bzeznik	00431493c0	itsx: init at 1.1.1	2019-03-26 15:52:35 +01:00
Bruno Bzeznik	6858d0fd62	clustal-omega: init at 1.2.4	2019-03-26 15:45:59 +01:00
Joachim F	c9cd1356ea	Merge pull request #56522 from bzizou/messer-slim ... messer-slim: init at 3.2.1	2019-03-26 00:42:58 +00:00
Dmitry Kalinkin	9ba406ff1c	kicad: replace with3DPackages option with an override	2019-03-24 01:37:47 -04:00
Dmitry Kalinkin	d0fc807347	kicad: make module list overridable ... This moves module definition into passthru. Otherwise building kicad would still require all modules to be built first even if they are not used. Also this drops preferLocalBuild from packages3d. hydraPlatforms should do what we need to. preferLocalBuild would addtitionaly disable remote builders, which is probably not what we want.	2019-03-24 01:37:46 -04:00
Gabriel Ebner	4446452347	Merge pull request #58163 from dtzWill/update/qalculate-3 ... libqalculate,qalculate-gtk: 2.9.0 -> 3.0.0	2019-03-23 18:50:24 +01:00
luz.paz	13158c692c	gmsh 4.2.1->4.2.2	2019-03-23 12:51:12 -04:00
markuskowa	b10799905c	Merge pull request #58162 from r-ryantm/auto-update/gromacs ... gromacs: 2019 -> 2019.1	2019-03-23 12:29:48 +01:00
Frederik Rietdijk	23e431387b	Merge staging-next into staging	2019-03-23 09:20:09 +01:00
Will Dietz	24484b216a	qalculate-gtk: 2.9.0 -> 3.0.0 ... http://qalculate.github.io/news.html	2019-03-23 01:09:17 -05:00
R. RyanTM	c70807aa13	gromacs: 2019 -> 2019.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gromacs/versions	2019-03-22 22:05:26 -07:00
Gabriel Ebner	11318d1ba2	elan: 0.7.4 -> 0.7.5	2019-03-22 11:16:44 +01:00
Jörg Thalheim	70d6db9097	Merge pull request #58065 from r-ryantm/auto-update/eagle ... eagle: 9.1.2 -> 9.3.1	2019-03-22 07:22:58 +00:00
Wael M. Nasreddine	5af0780492	Merge remote-tracking branch 'origin/master' into staging ... * origin/master: (693 commits) buildGoModule: use go_1_12 instead of go_1_11 (#58103) gitAndTools.lab: 0.15.2 -> 0.15.3 (#58091) signal-desktop: 1.22.0 -> 1.23.0 added missing semicolon to documentation terminus_font_ttf: 4.46.0 -> 4.47.0 buildGoModule: remove SSL env vars in favor of cacert in buildInputs (#58071) dav1d: init at 0.2.1 dropbox-cli: 2018.11.28 -> 2019.02.14 atlassian-confluence: 6.14.1 -> 6.14.2 maintainers: update email for dywedir python.pkgs.hglib: use patch to specify hg path (#57926) chkrootkit: 0.52 -> 0.53 radare2-cutter: 1.7.2 -> 1.8.0 autorandr: 1.7 -> 1.8 pythonPackages.pyhepmc: fix build llvm-polly/clang-polly: use latest llvm apulse: 0.1.11.1 -> 0.1.12, cleanup factorio: experimental 0.17.14 → 0.17.16 (#58000) sequeler: 0.6.7 -> 0.6.8 nasc: 0.5.1 -> 0.5.2 ...	2019-03-21 21:01:25 -07:00
R. RyanTM	34cba0b001	ginac: 1.7.4 -> 1.7.5 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/ginac/versions	2019-03-21 17:54:31 -07:00
R. RyanTM	6c14a2f3f8	eagle: 9.1.2 -> 9.3.1 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/eagle/versions	2019-03-21 10:40:06 -07:00