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Merge pull request #58538 from bzizou/stacks

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stacks: init at 2.3e
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markuskowa 2019-04-03 14:41:00 +02:00 committed by GitHub
commit 126e1f8fd0
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2 changed files with 21 additions and 0 deletions
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19
pkgs/applications/science/biology/stacks/default.nix Normal file
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@ -0,0 +1,19 @@
{ stdenv, fetchurl, zlib }:
stdenv.mkDerivation rec {
pname = "stacks";
version = "2.3e";
src = fetchurl {
url = "http://catchenlab.life.illinois.edu/stacks/source/${pname}-${version}.tar.gz";
sha256 = "046gmq8nzqy5v70ydqrhib2aiyrlja3cljvd37w4qbd4ryj3jr0w";
};
buildInputs = [ zlib ];
meta = {
description = "Software pipeline for building loci from short-read sequences";
homepage = http://catchenlab.life.illinois.edu/stacks/;
maintainers = [ stdenv.lib.maintainers.bzizou ];
license = stdenv.lib.licenses.gpl3;
};
}

2
pkgs/top-level/all-packages.nix
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@ -21837,6 +21837,8 @@ in
somatic-sniper = callPackage ../applications/science/biology/somatic-sniper { };
stacks = callPackage ../applications/science/biology/stacks { };
star = callPackage ../applications/science/biology/star { };
strelka = callPackage ../applications/science/biology/strelka { };