| .. |
|
angsd
|
angsd: 0.937 -> 0.938
|
2022-07-28 07:50:11 +00:00 |
|
ants
|
ants: 2.2.0 -> 2.4.1
|
2022-09-04 13:36:24 -04:00 |
|
aragorn
|
|
|
|
astral
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
bayescan
|
bayescan: fix the build
|
2022-05-13 12:00:08 +02:00 |
|
bcftools
|
bcftools: 1.15 -> 1.16
|
2022-08-18 18:44:42 +00:00 |
|
bedops
|
bedops: 2.4.40 -> 2.4.41
|
2022-07-19 09:09:52 +10:00 |
|
bedtools
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
bftools
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
blast
|
blast: 2.12.0 -> 2.13.0
|
2022-04-29 09:39:10 -05:00 |
|
bowtie
|
bowtie: fix build on case insensitive file systems
|
2022-05-11 03:20:03 -05:00 |
|
bowtie2
|
bowtie2: 2.4.4 -> 2.4.5
|
2022-01-23 22:45:59 +00:00 |
|
bppsuite
|
|
|
|
bwa
|
bwa: pull upstream fix for -fno-common tollchains
|
2022-05-08 08:56:43 +01:00 |
|
cd-hit
|
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
|
2021-08-02 20:05:00 +03:00 |
|
clustal-omega
|
treewide: add meta.mainProgram to many packages
|
2022-04-14 10:24:01 -07:00 |
|
cmtk
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
conglomerate
|
|
|
|
dcm2niix
|
dcm2niix: support usage of suggested Cloudflare zlib
|
2022-04-18 15:00:45 -04:00 |
|
deeptools
|
deeptools: 3.5.0 -> 3.5.1
|
2022-01-21 05:36:24 +00:00 |
|
delly
|
delly: 1.0.3 -> 1.1.3
|
2022-08-05 08:58:15 +00:00 |
|
diamond
|
diamond: update metadata
|
2022-07-13 12:33:33 +02:00 |
|
dssp
|
dssp: init at 4.0.5
|
2022-07-19 12:17:34 +09:00 |
|
ecopcr
|
maintainers: remove metabar
|
2022-06-29 00:52:13 +02:00 |
|
eggnog-mapper
|
eggnog-mapper: 2.1.7 -> 2.1.9
|
2022-08-21 12:45:21 +00:00 |
|
emboss
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
est-sfs
|
est-sfs: fix darwin build
|
2021-05-15 12:10:05 +02:00 |
|
exonerate
|
|
|
|
EZminc
|
EZminc: itk4 -> itk (formally; package is broken)
|
2022-09-04 13:36:24 -04:00 |
|
fastp
|
fastp: 0.23.1 -> 0.23.2
|
2021-12-02 08:03:17 +11:00 |
|
febio-studio
|
febio-studio: init at 1.6.1
|
2022-02-21 16:43:36 +01:00 |
|
flywheel-cli
|
treewide/applications: add sourceType binaryNativeCode for many packages
|
2022-06-23 18:38:19 +01:00 |
|
freebayes
|
freebayes: add -fcommon workaround
|
2022-05-14 13:19:17 +01:00 |
|
gatk
|
gatk : init at 4.2.6.1
|
2022-09-04 15:34:30 +02:00 |
|
genmap
|
genmap: init 1.3.0
|
2021-12-04 06:51:16 +11:00 |
|
hisat2
|
hisat2: update homepage
|
2022-02-06 15:10:53 +01:00 |
|
hmmer
|
hmmer: restrict platforms to x86_64
|
2021-11-20 19:17:57 +00:00 |
|
igv
|
igv: 2.14.0 -> 2.14.1
|
2022-09-05 22:29:15 +00:00 |
|
inormalize
|
|
|
|
iqtree
|
iqtree: init at 2.2.0.4
|
2022-05-30 10:53:40 +02:00 |
|
itsx
|
|
|
|
iv
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
kallisto
|
kallisto: 0.46.2 -> 0.48.0
|
2022-01-31 09:53:54 -08:00 |
|
kent
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
kssd
|
kssd: pull upstream fix for -fno-common tollchains
|
2022-05-21 11:22:53 +01:00 |
|
last
|
last: 1409 -> 1411
|
2022-09-21 08:24:01 +00:00 |
|
MACS2
|
MACS2: mark broken
|
2022-06-06 11:46:22 -07:00 |
|
macse
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
mafft
|
mafft: 7.505 -> 7.508
|
2022-09-09 13:26:38 +09:00 |
|
manta
|
|
|
|
megahit
|
Static build for megahit
|
2022-05-04 02:13:31 +02:00 |
|
meme-suite
|
meme-suite: init at 5.1.1 (#118603)
|
2021-04-05 22:43:27 +02:00 |
|
messer-slim
|
messer-slim: 4.0 -> 4.0.1
|
2022-09-15 22:25:51 +00:00 |
|
migrate
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
minc-tools
|
|
|
|
minc-widgets
|
|
|
|
minia
|
|
|
|
minimap2
|
minimap2: enable aarch64 builds (#161169)
|
2022-03-04 12:27:29 +01:00 |
|
mni_autoreg
|
mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20
|
2022-07-26 16:03:12 -04:00 |
|
mosdepth
|
mosdepth: 0.3.2 -> 0.3.3
|
2022-02-12 14:31:47 +00:00 |
|
mrbayes
|
mrbayes: 3.2.7 -> 3.2.7a
|
2021-07-27 14:30:23 +02:00 |
|
mrtrix
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
|
muscle
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
|
N3
|
|
|
|
neuron
|
treewide/python-modules: add sourceProvenance for several packages
|
2022-06-20 09:43:10 +02:00 |
|
niftyreg
|
|
|
|
niftyseg
|
niftyseg: switch to fetchFromGitHub
|
2021-12-23 19:11:17 +01:00 |
|
obitools
|
obitools3: removed useless python restriction
|
2021-11-08 07:51:48 +01:00 |
|
octopus
|
octopus: 0.7.3 -> 0.7.4
|
2021-05-11 08:46:00 +10:00 |
|
paml
|
paml: add -fcommon workaround
|
2022-05-22 20:23:12 +01:00 |
|
picard-tools
|
picard-tools: 2.26.11 -> 2.27.4
|
2022-07-29 16:12:10 +00:00 |
|
platypus
|
|
|
|
plink-ng
|
treewide: pkgs/applications: mark broken for aarch64-linux
|
2022-05-30 13:42:58 +02:00 |
|
poretools
|
python,pythonPackages: make aliases
|
2022-01-16 18:39:59 +00:00 |
|
prodigal
|
|
|
|
quast
|
treewide/applications: add sourceType binaryNativeCode for many packages
|
2022-06-23 18:38:19 +01:00 |
|
raxml
|
raxml-mpi: remove appendToName to have a consistent package name for repology
|
2022-02-28 12:46:15 +01:00 |
|
repseek
|
repseek: init at 9Sep2014 (#148017)
|
2022-01-31 14:59:32 +01:00 |
|
sambamba
|
sambamba: 0.8.1 -> 0.8.2 (#155972)
|
2022-01-23 04:51:46 +01:00 |
|
samblaster
|
samblaster: fix darwin build
|
2021-05-18 13:41:51 +02:00 |
|
samtools
|
samtools: Fix cross-compilation
|
2022-08-02 17:52:50 +02:00 |
|
seaview
|
seaview: 5.0.4 -> 5.0.5
|
2021-12-12 15:59:16 +00:00 |
|
seqtk
|
seqtk: init at 1.3
|
2022-09-25 19:55:58 -04:00 |
|
snpeff
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
spades
|
Merge pull request #184694 from r-ryantm/auto-update/SPAdes
|
2022-08-23 20:21:42 +02:00 |
|
stacks
|
stacks: 2.59 -> 2.60
|
2022-01-02 19:23:58 +01:00 |
|
star
|
star: 2.7.9a -> 2.7.10a
|
2022-01-24 19:51:44 +01:00 |
|
strelka
|
|
|
|
subread
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
sumatools
|
|
|
|
svaba
|
Merge pull request #175259 from trofi/workaround-fno-common-for-svaba
|
2022-06-03 05:59:16 +00:00 |
|
tebreak
|
treewide: remove nativeBuildInputs that are in stdenv
|
2022-04-16 21:46:46 +03:00 |
|
treemix
|
treemix: init at 1.13
|
2022-09-05 06:55:03 +02:00 |
|
trimal
|
|
|
|
truvari
|
truvari: 2.0.2 -> 2.1.1 (#126839)
|
2021-06-15 22:14:20 +02:00 |
|
varscan
|
treewide: set sourceProvenance for packages containing downloaded jars
|
2022-06-04 19:47:57 +01:00 |
|
vcftools
|
|
|
|
whisper
|
treewide: pkgs/applications: mark broken for darwin
|
2022-05-29 10:56:04 +02:00 |
|
xenomapper
|
python3Packages.xenomapper: move to top-level
|
2022-01-01 02:09:11 +01:00 |
