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ecd5886830
nixpkgs/pkgs/applications/science/biology
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Robert Scott ecd5886830 truvari: 1.3.4 -> 2.0.2, fixing build 
seeing it has no tests, use pythonImportsCheck in an attempt to detect
total breakage, even though it's not intended to be used as an importable
module
2020-09-20 12:25:17 +01:00
..
ants vtk: 7.1.1 -> 8.2.0 2020-05-11 17:54:29 -04:00
aragorn treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bayescan bayescan: init at 2.1 (#68191) 2020-01-09 12:38:53 -05:00
bcftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bedtools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
blast treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bowtie2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
bppsuite bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
bwa bwa: include static library and some key headers in output 2020-09-20 12:23:18 +01:00
cd-hit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
clustal-omega treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
cmtk treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
conglomerate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
dcm2niix dcm2niix: 1.0.20190902 -> 1.0.20200331 2020-05-02 10:16:22 +02:00
deeptools deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
delly delly: 0.8.1 -> 0.8.2 2020-02-11 19:21:59 +11:00
diamond treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
ecopcr treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
eggnog-mapper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
emboss emboss: fix license 2020-06-26 11:05:24 +02:00
est-sfs treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
exonerate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
EZminc ezminc: switch from itk5 to itk4 branch 2020-05-05 00:08:04 -04:00
freebayes treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
hisat2 hisat2: 2.1.0 -> 2.2.1 2020-08-16 13:30:53 +00:00
hmmer hmmer: enable on darwin 2020-07-28 13:47:34 -05:00
igv Merge pull request #81129 from scalavision/igv-update-28x 2020-08-23 19:24:33 +02:00
inormalize lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
itsx itsx: enable on darwin 2020-07-28 13:48:55 -05:00
iv treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
kallisto kallisto: 0.46.1 -> 0.46.2 2020-02-15 22:39:58 +01:00
kssd kssd: 1.0 -> 1.1 2020-08-14 15:06:11 +00:00
last last: 1061 -> 1066 2020-07-05 08:43:25 +00:00
macse macse: init at 2.03 2019-09-24 08:24:07 +02:00
manta manta: init 1.6.0 2020-01-24 02:02:19 -08:00
megahit treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
messer-slim treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
migrate treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
minc-tools minc-tools: actually build Nifti support 2020-07-06 11:09:33 -04:00
minc-widgets lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minia minia: init at 3.2.1 2019-12-20 11:27:04 +11:00
minimap2 treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mni_autoreg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
mosdepth nim: wrap compiler for cross-compilation support 2020-09-07 16:16:55 +02:00
mrbayes mrbayes: fix license 2020-06-26 11:06:35 +02:00
mrtrix mrtrix: 3.0_RC3_latest -> 3.0.0 2020-04-28 10:37:06 -04:00
muscle treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
N3 lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
ncbi-tools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
neuron treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyreg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
niftyseg treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
octopus treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
paml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
picard-tools picard-tools: 2.23.3 -> 2.23.4 2020-09-05 14:02:32 +00:00
platypus treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
plink treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
plink-ng treewide: use blas and lapack 2020-04-17 16:24:09 -05:00
poretools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
prodigal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
quast Quast: init at 5.0.2 2020-04-24 10:11:54 +02:00
raxml treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
samtools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
seaview seaview: 5.0.2 -> 5.0.4 2020-07-07 13:30:35 +00:00
snpeff treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
somatic-sniper treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sortmerna sortmerna: 3.0.3 -> 4.2.0 2020-07-18 18:06:23 +02:00
spades SPAdes: 3.14.0 -> 3.14.1 2020-05-10 13:06:19 +00:00
stacks stacks: 2.52 -> 2.53 2020-05-10 09:37:29 -07:00
star star: 2.7.4a -> 2.7.5c 2020-09-05 18:44:51 +00:00
strelka treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
sumatools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
svaba svaba: init at 1.1.0 2019-12-08 14:51:05 +01:00
tebreak tebreak: 1.0 -> 1.1 2020-07-04 10:45:49 +00:00
trimal treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
truvari truvari: 1.3.4 -> 2.0.2, fixing build 2020-09-20 12:25:17 +01:00
varscan treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
vcftools treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
whisper whisper: init at 2.0.1 2020-07-06 18:59:45 +10:00
xenomapper python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00