bayescan: init at 2.1 (#68191)

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>

pkgs/applications/science/biology/bayescan/default.nix

@@ -0,0 +1,39 @@
+{ stdenv, fetchurl, unzip, llvmPackages }:
+
+stdenv.mkDerivation rec {
+  pname = "bayescan";
+  version = "2.1";
+
+  src = fetchurl {
+    url = "http://cmpg.unibe.ch/software/BayeScan/files/BayeScan${version}.zip";
+    sha256 = "0ismima8j8z0zj9yc267rpf7z90w57b2pbqzjnayhc3ab8mcbfy6";
+  };
+
+  nativeBuildInputs = [ unzip ];
+  buildInputs = stdenv.lib.optional stdenv.cc.isClang llvmPackages.openmp;
+
+  # Disable FORTIFY_SOURCE or the binary fails with "buffer overflow"
+  hardeningDisable = [ "fortify" ];
+
+  sourceRoot = "BayeScan${version}/source";
+
+  postPatch = ''
+    substituteInPlace Makefile --replace "-static" "" \
+                               --replace "g++" "c++"
+  '';
+
+  installPhase = ''
+    mkdir -p $out/bin
+    mkdir -p $out/share/doc/bayescan
+    cp bayescan_${version} $out/bin
+    cp -r ../*pdf ../input_examples ../"R functions" $out/share/doc/bayescan
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Detecting natural selection from population-based genetic data";
+    homepage = "http://cmpg.unibe.ch/software/BayeScan";
+    license = licenses.gpl3;
+    maintainers = [ maintainers.bzizou ];
+    platforms = stdenv.lib.platforms.all;
+  };
+}

pkgs/top-level/all-packages.nix

@@ -23701,6 +23701,8 @@ in
     stdenv = gcc49Stdenv;
   };
 
+  bayescan = callPackage ../applications/science/biology/bayescan { };
+
   bedtools = callPackage ../applications/science/biology/bedtools { };
 
   bcftools = callPackage ../applications/science/biology/bcftools { };