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nixpkgs/pkgs/applications/science/biology
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Frederik Rietdijk 419bc0a4cd Revert "Revert "Merge master into staging-next"" 
In 87a19e9048 I merged staging-next into master using the GitHub gui as intended.
In ac241fb7a5 I merged master into staging-next for the next staging cycle, however, I accidentally pushed it to master.
Thinking this may cause trouble, I reverted it in 0be87c7979. This was however wrong, as it "removed" master.

This reverts commit 0be87c7979.
2020-02-05 19:41:25 +01:00
..
ants ants: use itk 4.x 2019-09-13 11:54:21 +02:00
aragorn aragorn: init at 1.2.38 (#58354) 2019-04-29 07:18:03 -04:00
bayescan bayescan: init at 2.1 (#68191) 2020-01-09 12:38:53 -05:00
bcftools bcftools: 1.9 -> 1.10.2 2019-12-22 20:00:29 -08:00
bedtools bedtools: 2.29.1 -> 2.29.2 2019-12-18 10:39:25 +11:00
bftools bftools: 5.9.2 -> 6.3.0 2019-12-06 02:11:00 -08:00
blast blast: init at 2.10.0 (#61430) 2020-01-07 20:14:18 +01:00
bowtie2 treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
bwa treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
cd-hit cd-hit: init at 4.8.1 2019-06-13 14:35:13 +02:00
clustal-omega treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
cmtk treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
conglomerate lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
dcm2niix dcm2niix: 1.0.20190410 -> 1.0.20190902 2019-10-22 16:31:19 -07:00
deeptools deeptools: init at 3.3.1 2019-11-04 02:42:36 -08:00
delly delly: init at 0.8.1 (#70871) 2019-10-10 22:08:45 -04:00
diamond treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
ecopcr
eggnog-mapper treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
emboss
est-sfs est-sfs: init at 2.03 2019-07-16 13:55:59 +02:00
exonerate exonerate: init at 2.4.0 2019-04-19 14:58:57 +02:00
EZminc EZminc: 2017-08-29 -> 2019-07-25; mark unbroken 2019-10-26 09:55:30 -07:00
freebayes freebayes: 2017-08-23 -> 1.3.1 (2019-06-03) 2019-11-20 09:10:31 -08:00
hisat2 treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
hmmer hmmer: 3.2.1 -> 3.3 2019-11-27 18:40:23 -08:00
igv maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
inormalize lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
itsx treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
iv iv: only use patchelf on linux 2019-06-05 23:42:58 -04:00
kallisto kallisto: 0.46.0 -> 0.46.1 (#74430) 2019-11-30 21:12:54 +01:00
kssd kssd: init at 1.0 2019-12-08 16:48:59 +01:00
last last: 1042 -> 1045 2020-01-06 11:46:28 -08:00
macse macse: init at 2.03 2019-09-24 08:24:07 +02:00
manta manta: init 1.6.0 2020-01-24 02:02:19 -08:00
megahit megahit: 1.1.4 -> 1.2.9 2019-11-02 15:53:57 +01:00
messer-slim treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
migrate migrate: init at 3.7.2 2019-04-05 09:01:36 +02:00
minc-tools lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minc-widgets lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minia minia: init at 3.2.1 2019-12-20 11:27:04 +11:00
minimap2 treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
mni_autoreg treewide: remove BUILD_TESTING flag 2019-03-11 10:11:28 -04:00
mosdepth treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
mrbayes
muscle muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
N3 lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
ncbi-tools treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
neuron treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
niftyreg niftyreg: fix build with gcc9 2019-11-03 14:43:37 +01:00
niftyseg nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
octopus treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
paml paml: 4.9i -> 4.9j 2019-12-01 18:43:58 +01:00
picard-tools picard-tools: 2.21.3 -> 2.21.6 2020-01-22 10:12:28 +00:00
platypus treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
plink pkgs: refactor needless quoting of homepage meta attribute (#27809) 2017-08-01 22:03:30 +02:00
plink-ng treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
poretools treewide: fix redirected urls 2020-01-22 11:26:22 +01:00
prodigal Prodigal: init at 2.6.3 2019-04-19 08:38:14 +02:00
raxml treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
samtools samtools: 1.9 -> 1.10 2020-01-19 13:13:01 -08:00
seaview seaview: 4.7 -> 5.0 2020-01-30 08:26:52 +00:00
snpeff treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
somatic-sniper treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
sortmerna sortmerna: init at 3.0.3 2019-08-27 00:37:43 +02:00
spades Revert "Revert "Merge master into staging-next"" 2020-02-05 19:41:25 +01:00
stacks stacks: 2.4 -> 2.41 2019-07-17 09:34:10 +02:00
star star: 2.7.2b -> 2.7.3a 2019-11-03 10:23:05 +01:00
strelka strelka: fix build w/ gcc9 2019-12-30 03:18:19 +01:00
sumatools treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
svaba svaba: init at 1.1.0 2019-12-08 14:51:05 +01:00
tebreak tebreak: init at 1.0 2019-12-29 17:16:10 +11:00
trimal trimal: init at 1.4.1 2019-06-14 16:31:39 +02:00
truvari truvari: init at 1.3.2 (#70877) 2019-10-24 17:06:42 -04:00
varscan treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
vcftools treewide: name -> pname (easy cases) (#66585) 2019-08-15 13:41:18 +01:00
xenomapper python.pkgs wide: fix problematic urls 2020-01-10 21:02:12 -08:00