Franz Pletz
de85797565
Merge remote-tracking branch 'origin/master' into gcc-8
2019-09-03 22:15:07 +02:00
worldofpeace
59e68d3b74
treewide: don't use single quotes with placeholder
2019-09-03 13:01:42 -04:00
Ryan Mulligan
32f9c619f5
Merge pull request #67969 from petabyteboy/feature/remove-dobuild
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treewide: remove uses of doBuild and doConfigure
2019-09-02 15:13:47 -07:00
Milan Pässler (work)
185fd61631
treewide: remove uses of doBuild and doConfigure
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doBuild and doConfigure are not actually used by any builders, they were
probably added by mistake and just confuse people.
2019-09-02 23:42:12 +02:00
Emily
d1dfaa79e3
symbiyosys: fix path to bash (again)
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/usr/bin/env works on NixOS normally, but previously sby would fail if
used from inside the Nix sandbox.
2019-09-01 14:22:49 -05:00
Tadeo Kondrak
2aa9b655f4
kallisto: 0.43.1 -> 0.46.0
2019-08-31 14:06:31 -06:00
Frederik Rietdijk
96e5474329
Merge master into staging-next
2019-08-31 18:04:31 +02:00
Alyssa Ross
1da1a7a479
pari: 2.11.1 -> 2.11.2
2019-08-31 13:33:00 +00:00
Alexander
35ac3344e7
colmap: init at 3.5 ( #67759 )
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* colmap: init at 3.5
2019-08-31 08:06:46 -04:00
Lassulus
a8d26fc34a
Merge pull request #63127 from bzizou/trimal
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trimal: init at 1.4.1
2019-08-31 13:04:41 +02:00
Frederik Rietdijk
fc74ba8291
Merge master into staging-next
2019-08-31 09:50:38 +02:00
Léo Gaspard
8a4721d606
Merge pull request #64669 from luispedro/add_sortmerna
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sortmerna: init at 3.0.3
2019-08-27 17:19:53 +02:00
Frederik Rietdijk
98640fd482
Merge master into staging-next
2019-08-27 16:36:47 +02:00
Luis Pedro Coelho
bc22c2e07f
sortmerna: init at 3.0.3
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This is a useful package in bioinformatics, namely in processing
short-read sequencing data from metagenomes
2019-08-27 00:37:43 +02:00
Jonathan Ringer
6f279584fd
stp: 2.2.0 -> 2.3.3
2019-08-26 14:00:48 -07:00
Robin Gloster
616b8343c4
Merge remote-tracking branch 'upstream/master' into gcc-8
2019-08-25 18:55:46 +02:00
Vladimír Čunát
985d1ac425
Merge branch 'master' into staging-next
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There were several more conflicts from name -> pname+version;
all auto-solved by kdiff3, hopefully OK.
Hydra nixpkgs: ?compare=1538611
2019-08-25 14:57:11 +02:00
Gabriel Ebner
440c63a38a
vampire: 4.2.2 -> 4.4
2019-08-25 14:43:51 +02:00
Nikolay Amiantov
9015d7a4f1
sumorobot-manager: init at 0.9.0
2019-08-24 19:11:27 +03:00
Vladimír Čunát
2e6bf42a22
Merge branch 'master' into staging-next
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There ver very many conflicts, basically all due to
name -> pname+version. Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job. There might be some fallback to these
conflicts, but I believe it should be minimal.
Hydra nixpkgs: ?compare=1538299
2019-08-24 08:55:37 +02:00
Emily
05c54717f8
symbiyosys: extend platforms
2019-08-23 02:14:40 -05:00
Marek Mahut
44d43368cb
Merge pull request #67155 from r-ryantm/auto-update/tulip
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tulip: 5.1.0 -> 5.2.1
2019-08-21 21:40:06 +02:00
R. RyanTM
187ec1a8c6
tulip: 5.1.0 -> 5.2.1
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Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tulip/versions
2019-08-20 19:45:43 -07:00
Marek Mahut
51980d6830
Merge pull request #67019 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.20.4 -> 2.20.5
2019-08-20 20:15:31 +02:00
R. RyanTM
41571dc81a
picard-tools: 2.20.4 -> 2.20.5
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Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-08-19 21:40:40 -07:00
Marek Mahut
b8a9d33bcd
Merge pull request #66884 from markuskowa/upd-octopus
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octopus: 9.0 -> 9.1
2019-08-19 11:53:01 +02:00
Marek Mahut
22aa7eadf1
Merge pull request #66871 from peterhoeg/f/apmplanner
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apmplanner2: fix build against qt 5.12
2019-08-19 11:43:40 +02:00
Markus Kowalewski
a81bb36249
octopus: 9.0 -> 9.1
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* switch to GitLab download
* cleanup fftw dependence
2019-08-19 10:24:44 +02:00
Peter Hoeg
374e0ad0a8
pulseview: use mkDerivation
2019-08-19 08:14:21 +02:00
Peter Hoeg
abbac2334b
apmplanner2: fix build against qt 5.12
2019-08-19 14:01:55 +08:00
Frederik Rietdijk
f65aa21bb2
Merge master into staging-next
2019-08-18 12:53:44 +02:00
Vladimír Čunát
8ed485c67b
Merge #65948 : tlaplusToolbox: 1.5.7 -> 1.6.0
2019-08-18 10:11:50 +02:00
Frederik Rietdijk
113dbfeb27
Merge pull request #66596 from emilazy/update-pypy-and-eda-tools
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Update PyPy and FOSS EDA tools
2019-08-17 17:48:21 +02:00
volth
c814d72b51
treewide: name -> pname
2019-08-17 10:54:38 +00:00
Frederik Rietdijk
fe9a3e3e63
Merge staging-next into staging
2019-08-17 09:39:23 +02:00
Timo Kaufmann
192197dc6c
Merge pull request #65802 from timokau/sage-transient-debug
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sage: add patch to debug transient issue
2019-08-17 00:33:05 +02:00
Timo Kaufmann
41bb319462
sage: avoid running out of memory during tests
2019-08-16 23:50:55 +02:00
markuskowa
8f5ce70861
Merge pull request #66665 from markuskowa/upd-molden
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molden: 6.1 -> 6.2
2019-08-15 18:59:50 +02:00
Matthew Bauer
ae15177ade
calc: don’t include glibc headers in closure
2019-08-15 23:31:14 +09:00
volth
46420bbaa3
treewide: name -> pname (easy cases) ( #66585 )
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treewide replacement of
stdenv.mkDerivation rec {
name = "*-${version}";
version = "*";
to pname
2019-08-15 13:41:18 +01:00
Markus Kowalewski
5b0bbcbb6e
molden: 6.1 -> 6.2
2019-08-15 09:35:34 +02:00
Gabriel Ebner
0a1e131077
gmsh: opencascade support
2019-08-14 19:09:40 +02:00
Gabriel Ebner
f91904a889
calculix: init at 2.15
2019-08-14 19:09:40 +02:00
Emily
a51e3987ad
symbiyosys: 2019.04.18 -> 2019.08.13
2019-08-14 00:14:22 -07:00
Dmitry Kalinkin
34224c7ba0
Merge pull request #66117 from veprbl/pr/hepmc_2_06_10
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hepmc: 2.06.09 -> 2.06.10
2019-08-11 22:16:16 -04:00
Timo Kaufmann
3541df594e
Merge pull request #66396 from timokau/sage-undo-short
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sage: default to long tests again
2019-08-10 13:16:00 +02:00
Lancelot SIX
8137a78adc
Merge pull request #66063 from lsix/drop_motu_client
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motu_client: drop
2019-08-10 00:02:12 +02:00
Timo Kaufmann
f6265b0da5
sage: default to long tests again
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Changed by accident in 5e58c5f900
.
2019-08-09 18:42:14 +02:00
Timo Kaufmann
9ef44b3431
sage: move sympow cache to .sage
2019-08-09 17:45:14 +02:00
Timo Kaufmann
5e58c5f900
sympow: 1.018.1 -> 2.023.4
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Maintenance taken over by debian package maintainer jgmbenoit:
https://trac.sagemath.org/ticket/3360#comment:17
This moves sympow to his fork, since there is no offical
version-controlled source repository from the original author and they
do not seem to maintain sympow anymore. We had already accumulated quite
some patches from debian, who have effectively maintained sympow for a
while now.
2019-08-09 17:45:08 +02:00