Commit Graph

1444 Commits

Author SHA1 Message Date
John Ericson
ed14223f8c treewide: Manual fix more pkg-config build-inputs 2017-09-21 15:49:54 -04:00
John Ericson
531e4b80c9 misc pkgs: Basic sed to get fix pkgconfig and autoreconfHook buildInputs
Only acts on one-line dependency lists.
2017-09-21 15:49:53 -04:00
Ben Darwin
c7bbe471b0 ants: bump version and fix sandboxed build 2017-09-20 18:42:34 -04:00
Nikolay Amiantov
c71d8a1aeb mxnet: init at 0.11.0 2017-09-16 04:40:55 +03:00
Franz Pletz
b19fa00e3e
Revert "mcrl2: force use of gcc5 to prevent compilation errors"
This reverts commit 5e5e57b57b.

Already fixed with edd94f5fcd.
2017-09-15 21:51:35 +02:00
Gabriel Ebner
aad00e35db lean: 3.2.0 -> 3.3.0 2017-09-15 08:48:02 +02:00
Vincent Laporte
cc5491d02c proverif: 1.95 -> 1.97pl1 2017-09-13 20:01:55 +02:00
timor
124b3c8ead qfsm: fix build with gcc 6 (#29245) 2017-09-11 20:26:24 +02:00
Bjørn Forsman
28f780b320 eagle: 7.5 -> 7.7
This is the latest release from Cadsoft, before they were bought by
Autocad. Autocad has released 8.x, but

- it requires reworking the Nix expression (different packaging)
- the paid license version requires a monthly subscription fee, you never
  "own" the software (AFAICT).

Due to the licensing change in 8.x, I think keeping Eagle 7.x around is
a good idea.
2017-09-11 14:44:43 +02:00
Maarten Hoogendoorn
5e5e57b57b mcrl2: force use of gcc5 to prevent compilation errors 2017-09-10 15:09:46 +02:00
Bjørn Forsman
15c18cef3d kicad: 4.0.6 -> 4.0.7 2017-09-09 13:05:07 +02:00
Bjørn Forsman
dfbb710375 kicad: put the full version string in name 2017-09-09 13:03:09 +02:00
Markus Mueller
edd94f5fcd mcrl2: 201409 -> 201707 2017-09-08 18:26:25 +02:00
Nikolay Amiantov
c4bed3043d caffe: add Python support
Move to CMake in the process.
2017-09-07 17:04:29 +03:00
Nikolay Amiantov
88641353d6 caffe: 2015-07-02 -> 1.0-rc5 2017-09-07 17:04:29 +03:00
Théo Zimmermann
9efd7a9b6e coq_8_7: init at 8.7+beta1 2017-09-06 21:16:41 +02:00
Théo Zimmermann
a26bbe547e coq: fetch source from GitHub 2017-09-06 21:16:41 +02:00
Michael Raskin
37392454f3 Merge pull request #28948 from disassembler/qucs
Qucs: version update and adms dependency
2017-09-06 20:24:55 +02:00
Robin Gloster
a0967948d9
bwa: 0.7.15 -> 0.7.16a 2017-09-05 14:42:45 +02:00
Gabriel Ebner
b2eff3c60d eprover: 1.9.1 -> 2.0 2017-09-05 13:59:07 +02:00
Samuel Leathers
00753e078d qucs: 0.0.18 -> 0.0.19 2017-09-03 14:21:52 -04:00
Samuel Leathers
df1d5a4827 adms: init at 2.3.6 2017-09-03 14:21:16 -04:00
Samuel Leathers
d9cd226a6d neuron: 7.4 -> 7.5 2017-09-02 16:58:14 -04:00
Austin Seipp
54ae0aa1b0 z3_opt: remove and replace with z3
Z3 has supported optimization features since the 4.4.x release, so this can be
removed.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-09-02 04:19:11 -05:00
Austin Seipp
583ebc086c yices: now under GPLv3
This means Hydra can build it now!

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-09-02 04:19:11 -05:00
Austin Seipp
fc143bf1a3 iverilog: 2016.05.21 -> 2017.08.12
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2017-09-02 04:19:11 -05:00
Samuel Leathers
04b8a85739 caneda: fix build with gcc6 2017-08-31 22:59:37 -04:00
Jörg Thalheim
4acdb408c0 Merge pull request #28801 from veprbl/sherpa_2_2_4
sherpa: 2.2.1 -> 2.2.4
2017-08-31 21:07:54 +01:00
Dmitry Kalinkin
59b525e559
sherpa: 2.2.1 -> 2.2.4 2017-08-31 14:32:05 -04:00
Jörg Thalheim
ed997b153c Merge pull request #28756 from disassembler/pulseview-sigrok
pulseview and sigrok updates
2017-08-31 09:28:44 +01:00
Dmitry Kalinkin
7c7ca7f017
root: add noSplash option 2017-08-30 19:56:53 -04:00
Samuel Leathers
b39462d0c3 pulseview: 0.3.0 -> 0.4.0 2017-08-30 13:52:17 -04:00
Michael Raskin
e36afa80e3 gfan: 0.5 -> 0.6; #28643 2017-08-30 18:19:14 +02:00
Samuel Leathers
029f40a552 xplanet: gcc6 patch 2017-08-30 11:04:26 -04:00
Lancelot SIX
e8e0cb193e
pspp: 0.8.3 -> 1.0.1 2017-08-30 10:01:32 +02:00
Will Dietz
c8f2e3f95f cvc3: Add gcc6 patch from Gentoo.
https://gitweb.gentoo.org/repo/gentoo.git/plain/sci-mathematics/cvc3/files/cvc3-2.4.1-gccv6-fix.patch
2017-08-29 13:48:09 -05:00
Gabriel Ebner
393f1f53be qalculate-gtk: 1.0.0 -> 2.0.0a 2017-08-29 10:30:26 +02:00
Lukas Werling
f0a1ab78b4 meson/ninja: add setup hooks (#28444)
* Add setupHook for meson/ninja build

* libhttpseverywhere: Use meson/ninja setupHooks

* jamomacore: Remove superfluous ninja buildInput

* Remove obsolete ninja buildPhases

These are all handled by ninja's setup hook.

* lean2, xcbuild: fix build with ninja setup hook

Ninja is a runtime dependency here. However, cmake can generate Ninja
build files as well to satisfy the setup hook.

* qtwebengine: fix build with ninja setup hook
2017-08-27 19:42:21 +02:00
Will Dietz
db66c996bf yices: 2.5.2 -> 2.5.3
Move to github URL, homepage seems to be down currently.
2017-08-27 10:10:48 -05:00
Will Dietz
3ab85383a0 libpoly: 0.1.3 -> 0.1.4 2017-08-27 10:10:47 -05:00
Dmitry Kalinkin
fd22d671ec root: 6.10.02 -> 6.10.04 2017-08-22 04:00:39 +02:00
Joachim F
aeb733c8d5 Merge pull request #28377 from Ma27/update/geogebra
geogebra: 5-0-377-0 -> 5-0-382-0
2017-08-20 20:15:37 +00:00
Frederik Rietdijk
5b8cd48e99 Merge pull request #28320 from rybern/add-poretools
poretools: init at 0.6.0
2017-08-20 17:44:05 +02:00
Gabriel Ebner
7da15a071d open-wbo: init at 2.0 2017-08-20 10:19:46 +02:00
Gabriel Ebner
acf01cbc6c lean2: 2016-11-29 -> 2017-07-22
This will also fix the build issues with GCC 6.
2017-08-19 15:24:35 +02:00
Maximilian Bosch
319dac82d1
geogebra: fallback to web.archive.org 2017-08-18 21:42:50 +02:00
Maximilian Bosch
242d950ab3
geogebra: 5-0-377-0 -> 5-0-382-0 2017-08-18 21:40:58 +02:00
Ryan Bernstein
749e702a46 poretools: version number to commit date 2017-08-18 09:59:26 -04:00
Matthew Bauer
b3d8c08a55 acgtk: fix homepage url 2017-08-17 15:04:37 -07:00
Matthew Bauer
59c5f52f67 caneda: use caneda.org for homepage 2017-08-17 15:04:37 -07:00
Matthew Bauer
99c868c010 use https://github.com for all homepages
GitHub does a redirect to https:// when you use http://

repology complains with:

“Homepage link "https://github.com/…" is dead (HTTP error 404) for more than a month.”

This will fix some of them (not all though)
2017-08-17 14:53:40 -07:00
Ryan Bernstein
a13e4ad1f5 poretools: init at 0.6.0 2017-08-17 11:17:30 -04:00
Frederik Rietdijk
006edcc316 Merge pull request #27440 from mnacamura/mathematica11_fix_ldpath
mathematica: fix library paths
2017-08-13 22:55:18 +02:00
Frederik Rietdijk
b14efb6a6c Merge pull request #28211 from mimadrid/update/samtools-1.5.0
samtools: 1.4.0 -> 1.5.0
2017-08-13 22:32:48 +02:00
Frederik Rietdijk
3f642af583 Merge pull request #28062 from lsix/update_motu-client
motu-client: 1.0.8 -> 1.4.0
2017-08-13 22:08:54 +02:00
Frederik Rietdijk
6e386925ac Merge pull request #28229 from jpierre03/pr-alt-ergo
alt-ergo: use https instead of http to fetch archive
2017-08-13 22:01:59 +02:00
Frederik Rietdijk
13bbaee21d Merge pull request #27881 from mimadrid/fix/http-https
Update homepage attributes: http -> https
2017-08-13 21:53:20 +02:00
Frederik Rietdijk
7ebcd39a0f Merge commit '4c49205' into HEAD 2017-08-13 18:34:59 +02:00
Jean-Pierre PRUNARET
184d2e7977 alt-ergo: use https instead of http to fetch archive 2017-08-13 13:26:30 +02:00
mimadrid
15a99ae367
bcftools: 1.4.0 -> 1.5.0 2017-08-13 00:17:48 +02:00
mimadrid
ca45a26ec3
samtools: 1.4.0 -> 1.5.0 2017-08-13 00:17:25 +02:00
Will Dietz
fbb6b90ed0 yices: 2.5.1 -> 2.5.2 2017-08-12 13:02:33 -05:00
pe@pijul.org
443ac23336 Gwyddion: init at 2.48 2017-08-11 20:30:11 +02:00
Lancelot SIX
38f3153caa
motu-client: 1.0.8 -> 1.4.0 2017-08-09 10:08:14 +02:00
davidak
3270aa896b replace "Mac OS X" and "OS X" with "macOS"
as it is the official name since 2016

https://en.wikipedia.org/wiki/Macintosh_operating_systems#Desktop

exception are parts refering to older versions of macOS like

"GUI support for Mac OS X 10.6 - 10.12. Note that Emacs 23 and later [...]"
2017-08-07 21:41:30 +02:00
Vincent Laporte
eb7312ca7d maxima: 5.39.0 -> 5.40.0 2017-08-05 10:48:50 +02:00
Théo Zimmermann
057ffcf0dd coq: adding myself to the maintainers 2017-08-04 19:52:55 +02:00
Théo Zimmermann
b25d65e051 coq: use camlp5_strict
The versions of Coq available through this expression do not actually
require camlp5_transitional. We drop this dependency to see if, in the
future, the package camlp5_transitional can be removed from nixpkgs.
2017-08-04 19:52:54 +02:00
Théo Zimmermann
c0dca2fb00 coq: 8.6 -> 8.6.1 2017-08-04 19:52:51 +02:00
mimadrid
09e0cc7cc7
Update homepage attributes: http -> https
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
2017-08-03 11:56:15 +02:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809)
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
2017-08-01 22:03:30 +02:00
Frederik Rietdijk
3ed7975b65 Merge pull request #27844 from mimadrid/update/igv-2.3.98
igv: 2.3.89 -> 2.3.98
2017-08-01 21:52:33 +02:00
Frederik Rietdijk
d1af3b33aa Merge pull request #27006 from Infinisil/scyther
scyther: init at 1.1.3
2017-08-01 21:48:47 +02:00
mimadrid
20fb18bdbc
igv: 2.3.89 -> 2.3.98 2017-08-01 20:46:31 +02:00
John Wiegley
ea8798acc6
coq2html: New expression 2017-08-01 09:30:20 -07:00
Frederik Rietdijk
903d9daf0f Merge pull request #27816 from mimadrid/update/calc-2.12.6.1
calc: 2.12.5.3 -> 2.12.6.1
2017-08-01 09:19:29 +02:00
mimadrid
eaf1198f39
calc: 2.12.5.3 -> 2.12.6.1 2017-07-31 23:27:29 +02:00
Gabriel Ebner
b94da10c27 libqalculate, qalculate-gtk: 0.9.9 -> 1.0.0 2017-07-31 16:29:39 +01:00
Franz Pletz
5d2f5e374f
verilator: build with current flex 2017-07-29 19:51:16 +02:00
Maximilian Bosch
02ceec5343 geogebra: 5-0-369-0 -> 5-0-377-0 2017-07-26 23:06:30 +02:00
Peter Hoeg
45248be2aa cryptominisat: use new xxd package instead of vim 2017-07-24 09:37:58 +08:00
Silvan Mosberger
313b8b7e4b scyther: Separated into two derivations 2017-07-23 03:17:38 +02:00
Franz Pletz
e69dfc252a
Revert "coq2html: New expression"
This reverts commit 31437ccf7a.
2017-07-20 19:36:50 +02:00
John Wiegley
31437ccf7a
coq2html: New expression 2017-07-20 11:51:25 -04:00
Mitsuhiro Nakamura
fb2302e115 Add missing 'math' 2017-07-19 17:39:36 +09:00
Mitsuhiro Nakamura
7aaea7297e Simplify the sed script 2017-07-19 15:18:44 +09:00
Jörg Thalheim
699f8e2f65 Merge pull request #26352 from Mounium/aliza
aliza: init at 1.29.2
2017-07-19 07:03:01 +01:00
Jörg Thalheim
d945e3ccc4 Merge pull request #27366 from veprbl/version_bumps
bump rivet, yoda, lhapdf
2017-07-18 23:38:53 +01:00
Symphorien Gibol
d7103eadc8 boolector: 1.{5,6} -> 2.4.1 2017-07-18 23:50:31 +02:00
Mitsuhiro Nakamura
488db3d392 mathematica: fix library paths 2017-07-18 19:45:43 +09:00
Gabriel Ebner
7ba1c7a9fb iprover: 0.8.1 -> 2.5 2017-07-17 22:45:27 +01:00
Silvan Mosberger
75fde4130d scyther: init at 1.1.3 2017-07-16 23:38:05 +02:00
Vladimír Čunát
371ad29661
abc-verifier: fix typo in meta 2017-07-15 09:27:41 +02:00
Dmitry Kalinkin
459e3864d2
root: 6.10.00 -> 6.10.02 2017-07-14 04:40:27 -04:00
Vincent Laporte
8bafd3aaa4 ginac: 1.6.2 -> 1.7.2 2017-07-13 19:35:06 +02:00
Michael Raskin
dcbe96d260 Merge pull request #27197 from kquick/master
yices library: enable full functionality by adding libpoly polynomial library and fix soname linking.
2017-07-08 22:37:12 +02:00
Vincent Laporte
eb2be6d97e acgtk: 1.1 -> 1.3.1 2017-07-08 08:52:02 +02:00
Vincent Laporte
43b2b55743 hol_light: 2016-07-23 -> 2017-07-06 2017-07-08 06:14:43 +00:00
Kevin Quick
6cbd9ce8f9 Fix license reference for added libpoly library. 2017-07-07 12:54:32 -07:00
Kevin Quick
6387a7ec8b Update yices to add libpoly/mcsat functionality and add soname target. 2017-07-06 21:31:38 -07:00
Kevin Quick
8ff05c85ee Add poly library for manipulating polynomials. 2017-07-06 21:30:30 -07:00
Katona László
b86eb39a58 aliza: 1.28.10->1.29.2 2017-07-02 23:39:08 +02:00
Peter Simons
4c5577b504 R: update to version 3.4.1 2017-06-30 13:37:26 +02:00
Shea Levy
24c59a4452 neuron: enable GUI 2017-06-28 11:59:54 -04:00
Maximilian Bosch
9516bbf172
geogebra: make language configurable 2017-06-27 09:51:06 +02:00
Vincent Laporte
ac83ef3994 glsurf: 3.3 -> 3.3.1 2017-06-26 19:24:33 +02:00
Joachim F
90d3a0314c Merge pull request #26836 from Ma27/update/geogebra
geogebra: 5-0-361-0 -> 5-0-369-0
2017-06-25 16:35:13 +01:00
Maximilian Bosch
f5665e9ab4
geogebra: 5-0-361-0 -> 5-0-369-0 2017-06-25 12:39:30 +02:00
Jörg Thalheim
ad42e5f6e5 Merge pull request #26795 from veprbl/root_6.10.00
root: 6.09.02 -> 6.10.00
2017-06-25 09:14:30 +01:00
Dmitry Kalinkin
ada12f46dc
root: 6.09.02 -> 6.10.00
also workaround #26197
2017-06-24 13:38:25 -04:00
Frederik Rietdijk
4f0d812abc python.pkgs.spyder: remove maintainers
since we both do not use this package anymore.
cc @bjornfor
2017-06-23 10:44:42 +02:00
Franz Pletz
b6cf652e08
boinc: 7.4.42 -> 7.8.0 2017-06-20 05:19:31 +02:00
Gabriel Ebner
89e02c7516 lean: 3.1.0 -> 3.2.0 2017-06-18 20:04:30 +02:00
Thomas Tuegel
c816bbc8a8
qt5: remove makeQtWrapper 2017-06-18 08:44:42 -05:00
Thomas Tuegel
210f688802
qt5: rename qmakeHook to qmake 2017-06-18 08:41:57 -05:00
Thomas Tuegel
3f3d33a078
qt5: use distinct lib/qt-5.x prefix for each minor version
Using a distinct prefix for plugins and QML libraries allows multiple Qt 5 minor
versions to coexist in the same environment.
2017-06-18 08:41:57 -05:00
Katona László
5e528db0d9 aliza: init at 1.28.10 2017-06-15 19:53:01 +02:00
Justin Bedo
94ec54598c
snpeff: 4.3i -> 4.3p 2017-06-13 15:31:52 +10:00
Jörg Thalheim
c972f01e2d
pymol: set PYTHONPATH in a future way 2017-06-02 21:55:16 +01:00
Katona László
2a1c535b7e pymol: added Pmw + python version bump 2017-06-02 19:58:00 +02:00
Maximilian Bosch
47e8665595
geogebra: 5-0-355-0 -> 5-0-361-0 2017-05-30 06:35:33 +02:00
Dan Peebles
594829ddfc msieve: update and enable on Darwin 2017-05-26 18:18:39 -04:00
Dan Peebles
1df505fc36 ecm: enable on Darwin 2017-05-26 18:14:31 -04:00
Vladimír Čunát
8004e79415
Merge branch 'master' into staging 2017-05-24 03:24:06 +02:00
Samuel Leathers
fdbcee03fe minisat: fix maintainer 2017-05-22 23:55:05 -04:00
Jörg Thalheim
2549be898d
stp: 2014.01.07 -> 2.2.0 2017-05-22 22:25:45 +01:00
Jörg Thalheim
893c7b6112
cryptominisat: init at 5.0.1 2017-05-22 22:25:14 +01:00
Jörg Thalheim
7786922240
minisatUnstable: init at 2013-09-25 2017-05-22 22:24:58 +01:00
Frederik Rietdijk
99cfab07b9 Merge remote-tracking branch 'upstream/master' into HEAD 2017-05-22 09:21:40 +02:00
Shea Levy
b1b61d0988 coq: nix-buffer: Inherit variables to PG shell 2017-05-22 00:45:54 -04:00
Jörg Thalheim
ea706bd98b Merge pull request #25231 from veprbl/root_6.09.02
root: 6.08.02 -> 6.09.02
2017-05-20 17:37:43 +01:00
Joachim Fasting
874b81b31f
treewide: s,enableParallelBuild(s),enableParallelBuilding,g 2017-05-20 17:16:17 +02:00
marcnnn
e46ca1b95f cvc4: 1.5pre-smtcomp2016 -> unstable-2017-05-18 (#25808)
* cvc4: 1.5pre-smtcomp2016 -> 1.5pre-20170514

* cvc4: use stable url

upstream delete their tarballs
2017-05-20 14:00:39 +01:00
Shea Levy
b21540c4a6 coq: Add emacs buffer setup 2017-05-20 08:34:33 -04:00
Vladimír Čunát
65ede052fa
treewide: fixup packages with RPATH problems 2017-05-16 18:30:58 +02:00
Matthew Daiter
093130f802 openmvs: init at current master (#25672)
* openmvs: init at current master

* openmvs: simplify expression

* openmvs: init at unstable-2017-05-01
2017-05-12 20:07:11 +01:00
Jörg Thalheim
be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4
Update/htslib 1.4
2017-05-11 07:08:56 +01:00
mimadrid
8d1bebf83c
bcftools: 1.3.1 -> 1.4 2017-05-11 07:04:33 +01:00
Peter Hoeg
32b57bec77 Merge pull request #25588 from mimadrid/update/weka-3.8.1
weka: 3.8.0 -> 3.8.1
2017-05-09 17:39:05 +08:00
mdaiter
fdd28b6fe0
openmvg: clarify Git version
fixes #25615
2017-05-09 09:39:41 +01:00
Frederik Rietdijk
183cada05a Merge pull request #25590 from mimadrid/update/cytoscape-3.5.1
cytoscape: 3.4.0 -> 3.5.1
2017-05-09 10:03:20 +02:00
mimadrid
9073e67568
samtools: 1.3.1 -> 1.4 2017-05-07 23:15:48 +02:00
mimadrid
0ed5b1c867
cytoscape: 3.4.0 -> 3.5.1 2017-05-07 23:05:59 +02:00
mimadrid
bfc3d976f3
weka: 3.8.0 -> 3.8.1 2017-05-07 22:54:09 +02:00
Michael Raskin
587ed894a4 Merge pull request #25480 from mdaiter/openmvg
openmvg: init at v1.1
2017-05-05 15:58:17 +02:00
Matthew Daiter
c6385eb0f5 openmvg: init at v1.1 2017-05-05 15:51:32 +02:00
Daniel Frank
f3f38eccbb kicad: update to 4.0.6 2017-05-04 20:39:20 +02:00
Peter Simons
5e5d16f425 R: import upstream patch to fix broken "R CMD Sweave" command
The command "R CMD Sweave" always exits with error code "1", even if the
command was successful. This upstream patch remedies this issue.
2017-05-03 14:20:41 +02:00
Aneesh Agrawal
bd9246b009 treewide: Always use integers for meta.priority
Meta attributes types are now enforce as of commit
90b9719f4f,
so ensure meta.priority is always set to an integer.

This fixes evaluation of `linuxPackages_latest.virtualbox`
(the impetus for this commit)
and other packages that use lowPrio or hiPrio.
2017-05-02 01:43:22 -04:00
Dmitry Kalinkin
a7b4b84048
sherpa: fix for llvm 4 2017-05-02 00:54:42 -04:00