scalavision
dbb4826457
truvari:1.3.2->1.3.4
2020-03-02 09:15:58 +01:00
Jan Tojnar
9555834399
netpbm: split into multiple outputs
2020-03-01 15:13:03 +01:00
Frederik Rietdijk
21b808cd76
Merge staging-next into staging
2020-02-29 15:29:45 +01:00
Benjamin Hipple
ad30a30488
rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation
...
Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.
This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
2020-02-28 18:54:23 -08:00
Matthieu Coudron
05b6836816
torchPackages, torch-repl: remove
...
See https://github.com/NixOS/nixpkgs/issues/71888
and https://github.com/NixOS/nixpkgs/issues/56398
To sump up, development has moved on to other technologies than lua:
https://github.com/torch/torch7#development-status
and the current packages are broken anyway.
2020-02-28 20:56:42 +01:00
Austin Seipp
7e66ce29bf
mcy: init at 2020.02.05
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-02-27 21:52:15 -06:00
Austin Seipp
3d8efecda1
symbiyosys: fix calls to external programs
...
48085826f
broke symbiyosys when it needed to call `yosys-abc`: when
`ABCEXTERNAL` is set in the Makefile, then `yosys-abc` is not built.
But in general `sby` was just calling programs out of the ambient
environment. Fix that for most programs it can invoke: it now has a
direct dependency on boolector, aiger, abc, yosys, etc.
This also does some other minor clean up.
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-02-27 21:52:15 -06:00
Mario Rodas
79f057e2eb
lean: 3.5.1 -> 3.6.0
2020-02-26 18:00:00 -05:00
Dmitry Kalinkin
b9ee6cd85c
Merge pull request #80640 from smaret/gildas-20200201a
...
gildas: 20200101_a -> 20200201_a
2020-02-25 10:26:18 -05:00
R. RyanTM
56d58ecb24
quantum-espresso: 6.4.1 -> 6.5
2020-02-24 19:40:14 +00:00
R. RyanTM
4080e7976e
gtkwave: 3.3.103 -> 3.3.104
2020-02-24 11:43:54 -06:00
Linus Heckemann
0cc83f884a
Merge pull request #80292 from bcdarwin/mrtrix
...
mrtrix: init at 3.0_RC3_latest
2020-02-24 13:52:38 +01:00
Timo Kaufmann
f4dbf4402b
Merge pull request #80759 from Thra11/fix-r
...
Fix R
2020-02-23 23:48:21 +00:00
Tom Hall
ae9e09a2e1
R: fix build on aarch64 by removing a failing test
...
I believe this test is currently incorrect on aarch64 and expects a
warning about loss of precision with much smaller numbers than the
platform's long doubles can handle.
2020-02-22 13:17:40 +00:00
Edward Tjörnhammar
9b6faedb18
shogun: 6.0.0 -> 6.1.4
...
Also migrate to opencv3 to address #72739 , the PR didn't build for me.
Disable testing and ccache since they were broken.
Co-authored-by: Robert Scott <code@humanleg.org.uk>
2020-02-21 11:05:09 +01:00
Sébastien Maret
7667207f3d
gildas: 20200101_a -> 20200201_a
...
- Upgrade gildas to the latest version
- Remove a patch that has been included upstream
- Re-enable parallel building (fixed upstream)
2020-02-20 15:28:57 +01:00
Gabriel Ebner
f098b0dd2c
Merge pull request #80576 from bhipple/u/rust-cargo-elan
...
elan: upgrade cargo fetcher and cargoSha256
2020-02-20 09:53:49 +01:00
Maximilian Bosch
7bdc103ac8
geogebra: 5-0-570-0 -> 5-0-573-0
2020-02-20 03:09:06 +01:00
Benjamin Hipple
ed85c9981a
elan: upgrade cargo fetcher and cargoSha256
...
Infra upgrade as part of #79975 ; ran `nixpkgs-review wip` successfully.
2020-02-19 18:17:27 -05:00
Tom Hall
4e5aeca90b
R: Enable java support on all platforms
2020-02-19 22:57:41 +00:00
Ben Darwin
9a2cd20478
mrtrix: init at 3.0_RC3_latest
...
This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169 ), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff.
Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
2020-02-16 22:25:25 -05:00
Daniel Schaefer
1e613230d2
Merge pull request #80122 from r-ryantm/auto-update/kallisto
...
kallisto: 0.46.1 -> 0.46.2
2020-02-15 22:41:15 +01:00
R. RyanTM
4c6c40d96a
kallisto: 0.46.1 -> 0.46.2
...
Co-authored-by: Daniel Schaefer <git@danielschaefer.me>
2020-02-15 22:39:58 +01:00
Junyoung Clare Jang
b71c03e483
lean: 3.4.2 -> 3.5.1
...
3.4.2 is not compilable with GCC >= 9.1
2020-02-15 02:29:12 -05:00
R. RyanTM
d54a58a2cd
verilator: 4.026 -> 4.028
2020-02-14 12:13:04 -06:00
Benjamin Hipple
eb11feaa0b
treewide: change fetchCargoTarball default to opt-out
...
Changes the default fetcher in the Rust Platform to be the newer
`fetchCargoTarball`, and changes every application using the current default to
instead opt out.
This commit does not change any hashes or cause any rebuilds. Once integrated,
we will start deleting the opt-outs and recomputing hashes.
See #79975 for details.
2020-02-13 22:41:37 -08:00
Dmitry Kalinkin
5f2a3bef33
Merge pull request #79778 from jbedo/delly
...
delly: 0.8.1 -> 0.8.2
2020-02-11 03:54:02 -05:00
Justin Bedo
a8fe9e7aff
delly: 0.8.1 -> 0.8.2
...
Backported patch required for htslib 1.10.2
2020-02-11 19:21:59 +11:00
Ryan Mulligan
b99e12f4fe
Merge pull request #79534 from r-ryantm/auto-update/last
...
last: 1045 -> 1047
2020-02-10 18:10:08 -08:00
Brenton Horne
567be48707
marvin: 20.3.0 -> 20.4.0
2020-02-10 19:55:13 +01:00
Evils
d3a9e634bf
kicad-unstable: update update.sh && update
...
use /tmp instead of XDG_RUNTIME_DIR
which is /run/user/1000, which defaults to 10% of RAM
and kicad-packages3d needs ~6gb
2020-02-10 19:54:38 +01:00
Evils
a9942b0226
kicad: simplify component names
2020-02-10 19:54:38 +01:00
Ben Darwin
39f0e3b32b
minc_tools: enable building conversion tools
2020-02-10 19:53:25 +01:00
Ben Darwin
bcad453bcf
minc_tools: 2017-09-11 -> unstable-2019-12-04
2020-02-10 19:53:25 +01:00
luc65r
94c60990fc
cemu: init at 1.3
2020-02-10 19:26:25 +01:00
R. RyanTM
e988c072be
clp: 1.17.3 -> 1.17.5
2020-02-10 13:24:22 +01:00
R. RyanTM
1d4fd7f5f2
verifast: 18.02 -> 19.12
2020-02-09 14:29:31 -06:00
R. RyanTM
3a1098e3e2
pcb: 4.2.1 -> 4.2.2
2020-02-09 16:49:13 +01:00
Frederik Rietdijk
3846896084
Merge pull request #79293 from NixOS/staging-next
...
Staging next (with glibc 2.30)
2020-02-09 16:40:16 +01:00
Ryan Mulligan
c9cf351871
Merge pull request #79479 from r-ryantm/auto-update/workcraft
...
workcraft: 3.1.9 -> 3.2.5
2020-02-09 06:37:47 -08:00
Frederik Rietdijk
531a48ebdb
Merge master into staging-next
2020-02-09 11:00:29 +01:00
Jannik Vierling
6ea5cd21ab
iprover: 2018_Jul_24_11h -> 3.1
2020-02-09 09:38:57 +01:00
Frederik Rietdijk
03755ed59a
Merge master into staging-next
2020-02-09 09:17:51 +01:00
Luz
0522b3347e
librepcb: 0.1.2 -> 0.1.3 ( #74786 )
2020-02-09 01:07:31 -05:00
Dmitry Kalinkin
1872e69450
Merge pull request #79301 from Abdillah/patch-2
...
librepcb: Fix platform plugin xcb not found
2020-02-09 00:28:49 -05:00
Emily
a14a32fd75
symbiyosys: 2019.10.11 -> 2020.02.08
2020-02-08 23:00:07 -06:00
Ryan Mulligan
537f07555f
Merge pull request #79557 from r-ryantm/auto-update/marvin
...
marvin: 19.27.0 -> 20.3.0
2020-02-08 12:42:18 -08:00
R. RyanTM
20f22f681f
marvin: 19.27.0 -> 20.3.0
2020-02-08 19:34:35 +00:00
markuskowa
8261fc4980
Merge pull request #79511 from r-ryantm/auto-update/gmsh
...
gmsh: 4.5.1 -> 4.5.2
2020-02-08 14:21:27 +01:00
R. RyanTM
dae266aa66
last: 1045 -> 1047
2020-02-08 13:04:53 +00:00
R. RyanTM
7c58b6437b
gmsh: 4.5.1 -> 4.5.2
2020-02-08 07:25:27 +00:00
Ryan Mulligan
555ca166ec
Merge pull request #79467 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.21.6 -> 2.21.8
2020-02-07 18:10:16 -08:00
R. RyanTM
5bf0de57ad
workcraft: 3.1.9 -> 3.2.5
2020-02-07 21:09:41 +00:00
Frederik Rietdijk
30f0909e3a
Merge master into staging-next
2020-02-07 19:27:52 +01:00
R. RyanTM
d5404eebe9
picard-tools: 2.21.6 -> 2.21.8
2020-02-07 17:20:58 +00:00
R. RyanTM
78d6e74427
eagle: 9.5.1 -> 9.5.2
2020-02-06 20:17:53 +01:00
R. RyanTM
ce5b0406db
labelImg: 1.6.0 -> 1.8.1
2020-02-06 20:11:53 +01:00
Hernawan Faïz Abdillah
2d4ee40176
librepcb: Fix platform plugin xcb not found
2020-02-06 08:44:16 +07:00
Frederik Rietdijk
292fd97f67
Merge staging-next into staging
2020-02-05 20:48:28 +01:00
Frederik Rietdijk
419bc0a4cd
Revert "Revert "Merge master into staging-next""
...
In 87a19e9048
I merged staging-next into master using the GitHub gui as intended.
In ac241fb7a5
I merged master into staging-next for the next staging cycle, however, I accidentally pushed it to master.
Thinking this may cause trouble, I reverted it in 0be87c7979
. This was however wrong, as it "removed" master.
This reverts commit 0be87c7979
.
2020-02-05 19:41:25 +01:00
Frederik Rietdijk
0be87c7979
Revert "Merge master into staging-next"
...
I merged master into staging-next but accidentally pushed it to master.
This should get us back to 87a19e9048
.
This reverts commit ac241fb7a5
, reversing
changes made to 76a439239e
.
2020-02-05 19:18:35 +01:00
Ryan Mulligan
67143ec938
Merge pull request #79231 from r-ryantm/auto-update/SPAdes
...
SPAdes: 3.13.1 -> 3.14.0
2020-02-05 06:54:45 -08:00
Vladimír Čunát
48a997cd76
Merge #66528 : glibc: 2.27 -> 2.30 (into staging)
...
Includes update of stdenv bootstap tools (for three main platforms)
and many package fixes with new glibc.
2020-02-05 13:41:09 +01:00
R. RyanTM
3c54ae5679
SPAdes: 3.13.1 -> 3.14.0
2020-02-04 16:40:50 +00:00
Millian Poquet
150f4a967c
simgrid: 3.24 -> 3.25
2020-02-03 10:37:03 -08:00
Maximilian Bosch
ea8ae88f04
Merge branch 'staging' into glibc230
2020-02-01 17:42:03 +01:00
Florian Klink
570afbcb5b
abc-verifier: passthru rev
...
Some consumers of abc-verifier require certain abc versions.
For that reason, expose the exact rev via a passtrhru.
2020-02-01 12:49:45 +01:00
Florian Klink
351f47da57
abc-verifier: 2018-07-08 -> 2020-01-11
2020-02-01 12:49:45 +01:00
markuskowa
d9209250e5
Merge pull request #78981 from r-ryantm/auto-update/jmol
...
jmol: 14.30.1 -> 14.30.2
2020-02-01 11:07:38 +01:00
Mario Rodas
c8af1bef6e
Merge pull request #78833 from r-ryantm/auto-update/snakemake
...
snakemake: 5.8.1 -> 5.9.1
2020-02-01 04:11:11 -05:00
Mario Rodas
611971f9a5
Merge pull request #78849 from r-ryantm/auto-update/tetgen
...
tetgen: 1.5.0 -> 1.5.1
2020-02-01 04:10:16 -05:00
R. RyanTM
097737b5a4
jmol: 14.30.1 -> 14.30.2
2020-02-01 03:50:56 +00:00
Vincent Laporte
13dd5844fd
coqPackages_8_11.coq: 8.11+β1 → 8.11.0
2020-01-31 14:09:51 +01:00
Vincent Laporte
659a7ae963
coq: disable CoqIDE on Darwin for Coq ≥ 8.10
2020-01-31 14:09:51 +01:00
Luka Blaskovic
fd614a8e8f
saw-tools: use default llvm
2020-01-30 18:35:30 -05:00
Jörg Thalheim
6eb23e0721
verilator: 4.024 -> 4.026 ( #78891 )
...
verilator: 4.024 -> 4.026
2020-01-30 20:43:40 +00:00
Jörg Thalheim
37286820f2
verilator: shebangs patch is not needed anymore
2020-01-30 20:42:51 +00:00
R. RyanTM
ab63f72b23
sherpa: 2.2.6 -> 2.2.8 ( #78852 )
2020-01-30 13:08:47 -05:00
R. RyanTM
cd526d844b
verilator: 4.024 -> 4.026
2020-01-30 18:06:40 +00:00
Ryan Mulligan
c179ec8a64
Merge pull request #78823 from r-ryantm/auto-update/seaview
...
seaview: 4.7 -> 5.0
2020-01-30 06:59:41 -08:00
Maximilian Bosch
abefd4f78a
pspp: 1.0.1 -> 1.2.0, fix build w/glibc-2.30
2020-01-30 15:19:44 +01:00
R. RyanTM
53706054ba
tetgen: 1.5.0 -> 1.5.1
2020-01-30 12:47:50 +00:00
R. RyanTM
a94c66bc88
snakemake: 5.8.1 -> 5.9.1
2020-01-30 09:44:26 +00:00
R. RyanTM
42fff82421
seaview: 4.7 -> 5.0
2020-01-30 08:26:52 +00:00
Mario Rodas
a20b7cff7c
Merge pull request #78521 from r-ryantm/auto-update/ott
...
ott: 0.29 -> 0.30
2020-01-29 21:47:20 -05:00
Frederik Rietdijk
dce0ca29d9
Merge master into staging-next
2020-01-28 10:46:13 +01:00
Silvan Mosberger
80a2740991
Merge pull request #78265 from Synthetica9/https-homepages
...
treewide: fix redirected urls
2020-01-27 15:00:53 +01:00
Gabriel Ebner
3809627321
Merge pull request #78511 from r-ryantm/auto-update/libqalculate
...
libqalculate: 3.6.0 -> 3.7.0
2020-01-26 18:47:18 +01:00
Gabriel Ebner
8161fe21e0
qalculate-gtk: 3.6.0 -> 3.7.0
2020-01-26 18:43:29 +01:00
R. RyanTM
f1085d02bb
ott: 0.29 -> 0.30
2020-01-26 09:43:23 +00:00
samlich
3376628557
pymol: cleanup
2020-01-25 19:58:36 +00:00
samlich
77317774ce
pymol: link desktop icon
2020-01-24 19:51:08 +00:00
samlich
3638755ff3
pymol: add samlich as maintainer
2020-01-24 19:49:38 +00:00
samlich
97410b59f3
pymol: 2.1.0 -> 2.3.0
2020-01-24 19:42:59 +00:00
Justin Bedo
7f142260d3
manta: init 1.6.0
2020-01-24 02:02:19 -08:00
Ryan Mulligan
a6dc361cae
Merge pull request #78261 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.21.3 -> 2.21.6
2020-01-22 16:18:57 -08:00
Patrick Hilhorst
593e11fd94
treewide: fix redirected urls
...
According to https://repology.org/repository/nix_unstable/problems , we have a
lot of packages that have http links that redirect to https as their homepage.
This commit updates all these packages to use the https links as their
homepage.
The following script was used to make these updates:
```
curl https://repology.org/api/v1/repository/nix_unstable/problems \
| jq '.[] | .problem' -r \
| rg 'Homepage link "(.+)" is a permanent redirect to "(.+)" and should be updated' --replace 's@$1@$2@' \
| sort | uniq > script.sed
find -name '*.nix' | xargs -P4 -- sed -f script.sed -i
```
2020-01-22 11:26:22 +01:00
R. RyanTM
fff7a7a862
picard-tools: 2.21.3 -> 2.21.6
2020-01-22 10:12:28 +00:00
DwarfMaster
227a3f4383
Renamed maintainer lucas8 -> dwarfmaster
2020-01-21 16:39:52 +10:00
Jonathan Ringer
4de137a77d
samtools: 1.9 -> 1.10
2020-01-19 13:13:01 -08:00
Frederik Rietdijk
bcd8c6b8dc
Merge master into staging-next
2020-01-17 17:08:16 +01:00
Dmitry Kalinkin
430dfb8082
Merge pull request #77631 from smaret/gildas-202001a
...
gildas: 20191201_a -> 20200101_a
2020-01-17 10:23:28 -05:00
Anders Kaseorg
3cd8ce3bce
treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH
...
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted. (See #67234 , for
example.) Fix this throughout the tree.
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2020-01-15 09:47:03 +01:00
Frederik Rietdijk
2a88c3c302
Merge staging-next into staging
2020-01-15 09:23:28 +01:00
Will Dietz
afe905246d
nota: init at 1.0
...
Fixes #77590 .
2020-01-14 15:16:21 -08:00
Sébastien Maret
0956fcab16
gildas: 20191201_a -> 20200101_a
2020-01-14 11:22:53 +01:00
Luka Blaskovic
991a7e041f
pcalc: build with bison3
2020-01-13 21:35:19 +00:00
lewo
4ea7d13c5c
Merge pull request #77041 from filalex77/rink-0.4.5
...
rink: 0.4.4 -> 0.4.5
2020-01-11 09:35:16 +01:00
Jonathan Ringer
5961f211f3
python.pkgs wide: fix problematic urls
2020-01-10 21:02:12 -08:00
Jörg Thalheim
01d93cbbe1
kicad: split version.nix & add update.sh ( #77003 )
...
kicad: split version.nix & add update.sh
2020-01-10 14:19:14 +00:00
Bruno Bzeznik
f7a4e4a93a
bayescan: init at 2.1 ( #68191 )
...
Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
2020-01-09 12:38:53 -05:00
markuskowa
2aecfca22c
Merge pull request #77083 from r-ryantm/auto-update/gmsh
...
gmsh: 4.4.1 -> 4.5.1
2020-01-09 12:27:11 +01:00
Mario Rodas
2148e53664
Merge pull request #77160 from r-ryantm/auto-update/ngspice
...
ngspice: 30 -> 31
2020-01-09 05:13:15 -05:00
Mario Rodas
6f79952429
Merge pull request #77169 from r-ryantm/auto-update/pcb
...
pcb: 4.2.0 -> 4.2.1
2020-01-09 05:09:50 -05:00
Evils
2607c4b9f9
kicad: split version.nix & add update.sh
...
update.sh generates version.nix
by default only updates kicad-unstable
several options (can be combined)
all, update to latest tag and master
clean, generate versions.sh from scratch
commit, make a git commit
2020-01-08 23:04:54 +01:00
Maximilian Bosch
8a6baaecb5
geogebra: 5-0-569-0 -> 5-0-570-0
2020-01-07 23:26:31 +01:00
Luis Pedro Coelho
fdfebafc10
blast: init at 2.10.0 ( #61430 )
...
Co-authored-by: Pavel Chuprikov <pschuprikov@gmail.com>
2020-01-07 20:14:18 +01:00
Markus Kowalewski
a74b248f06
openmolcas: 18.09 -> 19.11
2020-01-07 15:36:59 +01:00
R. RyanTM
cc98c9fbb2
pcb: 4.2.0 -> 4.2.1
2020-01-06 19:47:54 -08:00
Ryan Mulligan
8e0b0d08c2
Merge pull request #77125 from r-ryantm/auto-update/last
...
last: 1042 -> 1045
2020-01-06 18:51:09 -08:00
R. RyanTM
501f79aa9b
ngspice: 30 -> 31
2020-01-06 17:40:29 -08:00
R. RyanTM
4bc4c70bc6
last: 1042 -> 1045
2020-01-06 11:46:28 -08:00
R. RyanTM
66156e04d5
gmsh: 4.4.1 -> 4.5.1
2020-01-06 06:33:28 -08:00
R. RyanTM
60fd879921
gromacs: 2019.4 -> 2020
2020-01-06 04:30:02 -08:00
Oleksii Filonenko
bc8dc2bd0a
rink: add filalex77 to maintainers
2020-01-06 12:41:19 +02:00
Oleksii Filonenko
8d8ce109cb
rink: 0.4.4 -> 0.4.5
2020-01-06 12:39:32 +02:00
markuskowa
b06114f078
Merge pull request #76311 from r-ryantm/auto-update/marvin
...
marvin: 19.23.0 -> 19.27.0
2020-01-04 12:24:48 +01:00
Gabriel Ebner
3604ae8394
Merge pull request #74259 from Evils-Devils/kicad-unstable
...
kicad: cleanup, fix and update
2020-01-03 20:14:07 +01:00
Frederik Rietdijk
7aa2b0215b
Merge master into staging-next
2020-01-03 10:25:14 +01:00
Ryan Mulligan
ec29bb50bf
Merge pull request #76208 from r-ryantm/auto-update/bcftools
...
bcftools: 1.9 -> 1.10.2
2020-01-02 16:42:27 -08:00
Evils
e4786f3a1c
kicad: update & cleanup
...
minor simplification, fix base version
split i18n and get from gitlab
correct wrapper pythonpath, cleanup build output
update & fake git describe
correct base.nix to fit contributing.md
2020-01-02 03:45:34 +01:00
Evils
6119ca27bb
kicad: split wrapping and building
2020-01-02 03:45:34 +01:00
Evils
d96992a21b
kicad: unite unstable.nix with default.nix
...
use latest libraries for unstable
move all revs and hashes to default.nix
thanks TQ for getting me through this blockage
2020-01-02 03:45:34 +01:00
Evils
958d745fec
kicad: use separated libraries
...
switch source to gitlab as that's the new upstream source
use wrapper variables for everything but i18n
add sym and fp templates to template path
update meta to reflect kicad's own language
set license to AGPLv3, according to the source's LICENSE.README
reduce diff between default and unstable in preparation of merging
on debian gets "no module named 'math'"
pcbnew 3d viewer is unusable (at least on my T410)
2020-01-02 03:45:34 +01:00
Evils
c61170168d
kicad: switch to best try from unstable and 5.1.5
...
make unstable use kicad-libraries
still using a link in $out..., not sure that's a bad thing
this allows setting that path in makeWrapperArgs
can't use $out there
kicad-with-packages3d -> kicad and kicad-small
default to OCCT, OCE is outdated
enforce OCCT on aarch64, where OCE is broken
withOCE flag allows using OCE on non-aarch64
2020-01-02 03:45:34 +01:00
Evils
6477f717e3
kicad-unstable: wrap
...
use wxGTK31
brings hiDPI support
no python shell...
2020-01-02 03:45:34 +01:00
Matt Huszagh
d40747ed2c
kicad: add python six package as dep
...
This is needed for python scripting support.
2020-01-02 03:45:34 +01:00
Matt Huszagh
1eb1b067dd
kicad: python2 -> python3
2020-01-02 03:45:34 +01:00
Robin Gloster
95526382be
polymake: fix for structured attrs
2019-12-31 00:49:42 +01:00
Robin Gloster
5f2b92e3ec
treewide: NIX_*_COMPILE -> string
2019-12-31 00:13:29 +01:00
Robin Gloster
ab0cfd9e03
treewide: NIX_*_COMPILE -> string
2019-12-31 00:10:18 +01:00
Frederik Rietdijk
6d059becd3
Merge gcc-9 into staging ( #68029 )
2019-12-30 16:38:38 +01:00
Robin Gloster
65395a7105
treewide: installTargets is a list
2019-12-30 13:29:27 +01:00
Merijn Broeren
133103d709
treewide: replace make/build/configure/patchFlags with nix lists
2019-12-30 12:58:11 +01:00
Robin Gloster
1065d80dd3
simgrid: *Flags are lists
2019-12-30 12:15:25 +01:00
Jan Tojnar
ea4da9b5fa
Merge pull request #76674 from jtojnar/structured-attrs-masterable
...
treewide: structured-attrs fixes
2019-12-30 04:52:45 +01:00
Robin Gloster
ac8eaa8507
treewide: fix *Flags
2019-12-30 04:50:37 +01:00
Franz Pletz
1a871b4382
minisat: 2.2.0 -> 2.2.1
2019-12-30 03:50:35 +01:00
Franz Pletz
a88fc6be6d
strelka: fix build w/ gcc9
2019-12-30 03:18:19 +01:00
R. RyanTM
3d740ef586
verilator: 4.022 -> 4.024
2019-12-29 15:48:39 -06:00
Frederik Rietdijk
eda01862c4
Merge pull request #75900 from jbedo/tebreak
...
Tebreak, minia, last, bx-python, python-lzo
2019-12-29 10:24:31 +01:00
Justin Bedo
11460d4cac
tebreak: init at 1.0
2019-12-29 17:16:10 +11:00
Ben Wolsieffer
660345d9fe
mavproxy: 1.8.17 -> 1.8.18
2019-12-27 16:23:20 -08:00
Franz Pletz
81248e703c
xfitter: 2.0.0 -> 2.0.1, fix build w/ gcc9
2019-12-27 03:48:21 +01:00
Dmitry Kalinkin
984ceb1092
Merge pull request #76541 from veprbl/pr/root_python_wrap
...
root: wrap python executables
2019-12-26 12:29:12 -05:00
Dmitry Kalinkin
0b28198f23
root: wrap python executables
...
In normal use of ROOT the PYTHONPATH is intended to be set when user
sources the thisroot.{,s}sh. We do that in the setupHook. This covers
the case when thisroot.sh was not sourced.
2019-12-26 11:49:12 -05:00
Maximilian Bosch
9842c4b107
treewide: update which packages I'm currently maintaining
...
Idea shamelessly stolen from 4e60b0efae
.
I realized that I don't really know anymore where I'm listed as maintainer and what
I'm actually (co)-maintaining which means that I can't proactively take
care of packages I officially maintain.
As I don't have the time, energy and motivation to take care of stuff I
was interested in 1 or 2 years ago (or packaged for someone else in the
past), I decided that I make this explicit by removing myself from several
packages and adding myself in some other stuff I'm now interested in.
I've seen it several times now that people remove themselves from a
package without removing the package if it's unmaintained after that
which is why I figured that it's fine in my case as the affected pkgs
are rather low-prio and were pretty easy to maintain.
2019-12-26 15:27:47 +01:00
Franz Pletz
77b6c3cd06
Merge remote-tracking branch 'origin/master' into gcc-9
2019-12-26 14:17:36 +01:00
Timo Kaufmann
8ac53ed0b1
python.pkgs.sympy: 1.4 -> 1.5
...
Sage needs some doctest changes. The patch was included upstream.
Modelled after https://trac.sagemath.org/ticket/28911 .
2019-12-26 11:46:42 +01:00
Markus Kowalewski
63d62699e0
marvin: 19.25.0 -> 19.27.0
2019-12-25 15:11:16 +01:00
Jan Tojnar
b1b26f8cf6
Merge pull request #76412 from jtojnar/pangox-compat-drop
...
pangox_compat: drop
2019-12-24 20:04:10 +01:00
Jan Tojnar
aee453e5c9
openmodelica: remove pangox dependency
...
It was probably just a dependency of `gtkglext` since I cannot find any reference to `pangox` in the repo.
But cannot verify build since it is broken.
2019-12-24 16:13:13 +01:00
markuskowa
64b6fa927e
Merge pull request #76285 from r-ryantm/auto-update/jmol
...
jmol: 14.30.0 -> 14.30.1
2019-12-24 02:05:48 +01:00
R. RyanTM
cf6d80a89d
marvin: 19.23.0 -> 19.25.0
2019-12-23 13:15:32 -08:00
R. RyanTM
398f11945e
jmol: 14.30.0 -> 14.30.1
2019-12-23 09:16:44 -08:00
R. RyanTM
c905a6da5a
bcftools: 1.9 -> 1.10.2
2019-12-22 20:00:29 -08:00
Maximilian Bosch
65061ab2ae
stellarium: 0.19.2 -> 0.19.3
...
https://github.com/Stellarium/stellarium/releases/tag/v0.19.3
2019-12-22 13:57:13 +01:00
Alyssa Ross
7887a81193
treewide: fix cargoSha256 (again)
...
cargo-vendor output was changed in a4fc84de44
.
2019-12-20 20:08:53 +00:00
Justin Bedo
2191912274
minia: init at 3.2.1
2019-12-20 11:27:04 +11:00
Justin Bedo
6741cff527
last: init at 1042
2019-12-20 11:27:02 +11:00
Jan Tojnar
048faed66a
pcb: 20140316 → 4.2.0
...
* Long overdue update
* Clean up the expression
* Drop unneeded pangox_compat – it was probably needed before gtkglext propagated it.
2019-12-19 00:47:20 +01:00
Justin Bedo
28a057a56b
bedtools: 2.29.1 -> 2.29.2
2019-12-18 10:39:25 +11:00
Mario Rodas
5e5ce79db4
Merge pull request #75807 from jbedo/strelka
...
strelka: fix broken build
2019-12-16 23:52:35 -05:00
Justin Bedo
c3f09c33eb
strelka: fix broken build
2019-12-17 11:20:32 +11:00
Alex Branham
7af84afa2a
R: 3.6.1 -> 3.6.2
...
Closes https://github.com/NixOS/nixpkgs/pull/75587 .
2019-12-16 18:56:49 +01:00
Florian Klink
0380ed20db
Merge pull request #75657 from flokli/gtkwave-gtk3
...
gtkwave: build with gtk3
2019-12-15 15:07:07 +01:00
Renaud
2a1a4cad38
Merge pull request #75388 from Lassulus/xplanet
...
xplanet: 1.3.0 -> 1.3.1
2019-12-15 14:57:48 +01:00
lassulus
3772d04e1c
xplanet: 1.3.0 -> 1.3.1
2019-12-15 14:02:36 +01:00
Florian Klink
ac1a5ac2db
gtkwave: build with gtk3
...
gtkwave ships a gtk3 flavour on sourceforge. let's use that one.
2019-12-15 03:54:35 +01:00
Austin Seipp
367676ce82
z3: 4.8.5 -> 4.8.7
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-12-14 20:33:59 -06:00
Ben Wolsieffer
bd9549baa9
mavproxy: init at 1.8.17
2019-12-14 11:00:34 -08:00
Vincent Laporte
856d0a44ec
Merge pull request #75141 from vbgl/coq-8.11β1
...
coq_8_11: init at 8.11+β1
2019-12-14 19:13:40 +01:00
Dmitry Kalinkin
b6d8873825
root: 6.12.06 -> 6.18.04
...
Also switch to python3.
2019-12-14 01:28:27 -08:00
Timo Kaufmann
ce013bb430
Merge pull request #75613 from timokau/brial-1.2.6
...
brial: 1.2.5 -> 1.2.6, pybrial: use brial src
2019-12-13 21:47:50 +01:00
Timo Kaufmann
6a800927bb
pybrial: 1.2.3 -> 1.2.5, directly use the brial src
...
The pybrial package is a bit awkward. It doesn't have its own top-level
attribute, since it has a cyclic dependency with sage. That's one of the
reasons why it rarely gets updated. Its distributed along with brial, so
its best to keep the versions synchronized. The easiest way to do this
is to just re-use the source of brial.
2019-12-13 20:29:16 +01:00
Robert Scott
c676063047
btor2tools: correct meta information
2019-12-12 10:37:02 -06:00
Robert Scott
b9185a96be
boolector: add patch for CVE-2019-7560
2019-12-12 10:37:02 -06:00
markuskowa
3922a30090
Merge pull request #75416 from jbedo/bedtools
...
bedtools: 2.29.0 -> 2.29.1
2019-12-10 23:58:03 +01:00
Justin Bedo
50fbca4bfc
bedtools: fix clang builds
2019-12-11 09:27:57 +11:00
Gabriel Ebner
5f1790101f
Merge branch 'auto-update/libqalculate'
2019-12-10 17:38:25 +01:00
Gabriel Ebner
12d9b6929c
qalculate-gtk: 3.5.0 -> 3.6.0
2019-12-10 17:34:29 +01:00
Justin Bedo
592d288aa2
bedtools: 2.29.0 -> 2.29.1
2019-12-10 13:24:27 +11:00
R. RyanTM
13c757e69c
snakemake: 5.7.4 -> 5.8.1 ( #74637 )
2019-12-09 20:47:24 +01:00
Robert Scott
2611887c2e
lingeling: enable for darwin
2019-12-08 18:32:04 +00:00
Robert Scott
dc6233b972
aiger: enable for darwin
2019-12-08 18:31:49 +00:00
Renato Alves
e18fb092f1
kssd: init at 1.0
2019-12-08 16:48:59 +01:00
R. RyanTM
b3262d2284
eagle: 9.5.0 -> 9.5.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
2019-12-08 15:16:53 +01:00
scalavision
3dfabd6eff
svaba: init at 1.1.0
2019-12-08 14:51:05 +01:00
markuskowa
444256039c
Merge pull request #75245 from r-ryantm/auto-update/jmol
...
jmol: 14.29.55 -> 14.30.0
2019-12-08 14:19:56 +01:00
R. RyanTM
b40940e9d6
jmol: 14.29.55 -> 14.30.0
2019-12-08 04:52:52 -08:00
Maximilian Bosch
e16df73d30
geogebra: 5-0-560-0 -> 5-0-569-0
2019-12-08 03:50:02 +01:00
Jonathan Ringer
9dc8e77e4e
giac-with-xcas: fix build
...
remove libGLU_combined package and replace with libGL and libGLU
2019-12-07 16:58:50 -08:00
Calvin Pritchard
1850d616ac
NetLogo: 6.0.4 -> 6.1.1
2019-12-07 22:24:26 +01:00
R. RyanTM
8582e5a759
marvin: 19.1.0 -> 19.23.0
2019-12-07 20:41:41 +01:00
Mario Rodas
835705d11b
Merge pull request #75095 from tbenst/bftools
...
bftools: 5.9.2 -> 6.3.0
2019-12-07 03:06:00 -05:00
Vincent Laporte
2942490c2c
coq_8_11: init at 8.11+β1
2019-12-07 07:58:00 +00:00
Tyler Benster
2700559bdc
bftools: 5.9.2 -> 6.3.0
2019-12-06 02:11:00 -08:00
Mateusz Kowalczyk
1451a52a38
Remove myself (fuuzetsu) from maintainer lists
...
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
2019-12-05 16:29:48 +09:00
Matt Huszagh
9c7cd63b3d
symbiyosys: add yices dependency
...
Symbioyosys requires at least smt solver backend
to work out of the box.
2019-12-04 14:29:31 -06:00
Sébastien Maret
c108acaaaf
gildas: 20191001_a -> 20191201_a ( #73041 )
...
* gildas: 20191001_a -> 20191101_a
* gildas: 20191101_a -> 20191201_a
2019-12-04 20:18:39 +01:00
Timo Kaufmann
5c9000014e
Merge pull request #74945 from timokau/sage-no-timeout
...
sage: disable test timeout
2019-12-04 09:55:34 +01:00
Vincent Laporte
3806eff9ca
coq_8_10: 8.10.1 → 8.10.2
2019-12-03 13:51:52 +00:00
R. RyanTM
605e88517b
paml: 4.9i -> 4.9j
2019-12-01 18:43:58 +01:00
Timo Kaufmann
e371a02b6c
sage: disable test timeout
...
I already did that once in 359bf7f1e3
.
That change mysteriously got lost somehow (presumably in some merge
commit).
Nix has its own timeout settings, so there is no risk in running
forever. At the same time, some tests can exceed the default timeout
(30minutes per file for --long tests) when run on many weak cores (like
the aarch64 community builder or some hydra builders).
2019-12-01 13:23:54 +01:00
Jan Tojnar
8cbc862b83
dconf: move to top-level
2019-12-01 01:01:40 +01:00
R. RyanTM
9e52523747
verilator: 4.020 -> 4.022
2019-11-30 18:27:06 -05:00
R. RyanTM
c41deafba3
gtkwave: 3.3.102 -> 3.3.103
2019-12-01 00:21:13 +01:00
R. RyanTM
da09e1e772
kallisto: 0.46.0 -> 0.46.1 ( #74430 )
2019-11-30 21:12:54 +01:00
Jan Tojnar
a69ad18da9
Merge branch 'master' into staging-next
2019-11-30 19:44:51 +01:00
R. RyanTM
98e0ead3ba
picard-tools: 2.21.1 -> 2.21.3 ( #74528 )
2019-11-30 16:24:44 +01:00
Frederik Rietdijk
d14baf7747
Merge master into staging-next
2019-11-30 08:57:28 +01:00
Ryan Mulligan
bc6b377a86
Merge pull request #74412 from r-ryantm/auto-update/hmmer
...
hmmer: 3.2.1 -> 3.3
2019-11-28 06:14:56 -08:00
Jonathan Ringer
0c1c18ca44
Merge branch 'master' into staging-next
2019-11-27 22:57:50 -08:00
R. RyanTM
6563dd3351
hmmer: 3.2.1 -> 3.3
2019-11-27 18:40:23 -08:00
Matthew Bauer
e010c1b031
Merge pull request #74092 from veprbl/pr/applgrid_fix
...
applgrid: fix build
2019-11-25 22:22:48 -06:00
John Ericson
d60532bc71
coq: Fix setup hook
2019-11-25 14:20:10 +00:00
Dmitry Kalinkin
bd0c4dd6ab
root: fix setupHook to work with "set -u"
2019-11-24 17:51:46 -05:00
Frederik Rietdijk
1d18c5a0fe
Merge staging-next into staging
2019-11-24 10:13:31 +01:00
Michael Raskin
c5e3aec122
golly: fix build
2019-11-22 17:41:46 +01:00
Kai Wohlfahrt
6b2504f9f2
freebayes: 2017-08-23 -> 1.3.1 (2019-06-03)
2019-11-20 09:10:31 -08:00
Frederik Rietdijk
5f8b0d7d99
Merge staging-next into staging
2019-11-19 14:53:29 +01:00
adisbladis
c9d8624ccd
treewide: Get rid of libGLU_combined
2019-11-18 20:10:43 +00:00
Mario Rodas
9f9720a567
Merge pull request #73447 from yrashk/streamlit-0.50.2
...
streamlit: 0.49.0 -> 0.50.2
2019-11-16 14:51:06 -05:00
c0bw3b
9367367dfd
Treewide: fix URL permanent redirects
...
Permanent redirects on homepages and/or source URLs
as reported by Repology
2019-11-16 01:41:23 +01:00
Jörg Thalheim
d729fdcd6e
nifticlib and niftseg: change platform from linux to unix sinc… ( #73442 )
...
nifticlib and niftseg: change platform from linux to unix since these…
2019-11-15 11:57:17 +00:00
Yurii Rashkovskii
a1a2d8d4c0
streamlit: 0.49.0 -> 0.50.2
2019-11-15 08:35:43 +01:00
Ben Darwin
736860d34b
nifticlib and niftseg: change platform from linux to unix since these build on OSX
2019-11-14 21:25:10 -05:00
Guanpeng Xu
66d5277375
mathematica: fix version issue with zlib ( #73425 )
2019-11-14 17:19:30 -05:00
Dmitry Kalinkin
93ee8095b0
snakemake: 5.4.4 -> 5.7.4 ( #72929 )
...
(#72929 )
2019-11-13 00:46:56 +01:00
Renaud
630380651d
Merge pull request #73215 from vbgl/why3-1.2.1
...
why3: 1.2.0 → 1.2.1
2019-11-13 00:12:05 +01:00
Dmitry Kalinkin
a84607a0e9
eagle: use mkDerivation provided by qt5
2019-11-12 11:21:06 -05:00
Vincent Laporte
a61354f262
why3: 1.2.0 → 1.2.1
2019-11-11 11:30:52 +00:00
Matthew Bauer
5ebd36403e
Merge pull request #70641 from maggesi/rename-z77z-into-maggesi
...
Rename z77z into maggesi
2019-11-07 17:18:20 -05:00
Matthew Bauer
551d9f632d
Merge pull request #72954 from nkpart/nkpart/R-darwin-enable-tcltk
...
R: enable tcltk on darwin
2019-11-07 16:49:46 -05:00
Yurii Rashkovskii
2e52f98ddb
streamlit: init at 0.49.0
2019-11-06 11:01:06 -08:00
Timo Kaufmann
afb9887dbd
sage: backport fix for threejs r109
2019-11-06 14:40:16 +01:00
Timo Kaufmann
f64885b9ca
sage: fix pkgconfig errors in tests
...
python.pkgs.pkgconfig raises an exception on missing packages since
version 1.5.0. Previously those errors were just silently ignored. That
worked fine, since the packages are only missing at runtime (when they
are not really needed) but present at buildtime.
Since this fails the tests now, we just add the packages to
PKG_CONFIG_PATH at runtime. This does not add additional runtime
dependencies. Still, it would be nicer if the sage testssuite would not
test the buildsystem at runtime in the first place.
The breakage was originally caused by the pkgconfig update in
1efa71616f
.
2019-11-06 14:40:13 +01:00
Timo Kaufmann
da7ec1c139
sage: ignore werkzeug immutable dict deprecation
2019-11-06 14:40:13 +01:00
Timo Kaufmann
f85ce834ce
sage: ignore deprecation warnings in rst2sws
...
Needs to be fixed upstream (by werkzeug, twisted). Doesn't impact the
functionality and the tests are soon to be removed with the py3 update
anyway.
2019-11-06 14:40:13 +01:00
Timo Kaufmann
af480796c9
sage: ignore cmp deprecation in sagenb
2019-11-06 14:40:13 +01:00