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699 Commits

Author SHA1 Message Date
Roberto Di Remigio
335e097352
mkl: 2019.5.281 -> 2020.0.166 (Linux only) 2020-03-27 08:45:20 +01:00
Jan Tojnar
d951c534da
Merge pull request #82274 from jtojnar/suitesparese-5.6 
suitesparse: 5.4.0 → 5.7.1 + clean up
 2020-03-22 06:58:25 +01:00
Josef Kemetmüller
fbb273c5fe fenics: 2017.1.0 -> 2019.1.0 
Fixes: NixOS/nixpkgs#75886
 2020-03-19 21:48:27 -07:00
Timo Kaufmann
d8d0b60c22
Merge pull request #82766 from r-ryantm/auto-update/brial 
brial: 1.2.7 -> 1.2.8
 2020-03-17 14:29:02 +00:00
R. RyanTM
707e0b1e96 brial: 1.2.7 -> 1.2.8 2020-03-17 01:13:50 +00:00
Tom Hall
c6c753668d openblas: disable optimisation pending fix 
See https://github.com/xianyi/OpenBLAS/issues/2496
 2020-03-14 18:06:59 +00:00
wucke13
4f58c15ee6 petsc: 3.8.4 -> 3.12.4 
+ add cxx flag to configure, because getdp needs it
 2020-03-13 04:10:20 +00:00
Jan Tojnar
b552b84ae2
suitesparse: ultimate clean-up 
* Switch to default buildPhase & installPhase
* In preConfigure
	* Do not add -DNPARTITION to CHOLMOD_CONFIG. That would disable the use of Metis but we already have that.
	* Do not remove -lrt on Darwin, Darwin compiler can handle that and the code no longer exists anyway.
	* With CUDA enabled
		* Do not replace CUDA_ROOT. It does not exist any more. Instead we are setting CUDA_PATH in makeFlags.
		* Do not replace GPU_BLAS_PATH, it defaults to CUDA_PATH so it will end up with the same value.
		* Do not add -DCHOLMOD_OMP_NUM_THREADS to GPU_CONFIG. Why would be having the library use the same number of threads as the builder a good idea?
		* Do not replace CUDA_PATH, we are setting it in makeFlags now.
		* Do not replace CUDART_LIB and CUBLAS_LIB. They were being replaced incorrectly (cuda libs are located in lib directory, not lib64). Instead set the correct paths in makeFlags.
		* Do not replace CUDA_INC_PATH. Its default looks like it will end up with the same value.
		* Do not replace NV20, NV30, NV35 – not used any more.
		* Do not replace NVCC, defaults to the same.
		* Do not replace NVCCFLAGS, we just used the default from SourceSparse 4.4.7 with -gencode=arch=compute_60,code=compute_60 tacked on top. Current upstream default looks much better.
* Stop adding -DNTIMER to CFLAGS on Darwin – clock_gettime is supported by macOS 10.12 SDK.
* In buildPhase
	* Move the make arguments to makeFlags and library to buildFlags, allowing us to drop the manual make call. I did not verify all of these are still needed.
	* Remove the creation of libsuitesparse.so. As far as I could tell it is some kind of remnant of our old expression – perhaps due to past deficiencies of the build scripts, we created the individual libraries as symlinks to libsuitesparse.so: e36b3ec0a5 But since the build script can now build individual .so libraries, there should be no need for this abomination. No other distros do this either.
* In installPhase
	* No need to copy things manually, there is an install target. We just need to pass INSTALL=$out flag to make to let it know where to install the files.
	* I do not have means of verifying the darwin dylib name fix but it looks like it might be fixed in an upcoming release.
	* I dropped the rpath fixup as it does not seem to be needed any more (ldd does not report any unresolved libraries).
 2020-03-11 03:45:25 +01:00
Jan Tojnar
c16d5b6534
suitesparse: do not build Mongoose & GraphBLAS 
We already have package for them
 2020-03-11 02:33:06 +01:00
Jan Tojnar
306cf6091f
suitesparse: link against system metis 2020-03-10 21:16:28 +01:00
Jan Tojnar
e9d7774b7b
suitesparse: 5.4.0 → 5.7.1 2020-03-10 21:16:27 +01:00
Jan Tojnar
559f02e208
suitesparse-graphblas: init at 3.1.2 2020-03-10 21:16:27 +01:00
Jan Tojnar
b4e6293a8d
mongoose: init at 2.0.4 2020-03-10 20:35:44 +01:00
Jan Tojnar
40ae28791f
suitesparse: clean up 
* Split to multiple outputs
* Fetch source from GitLab (the only source for future releases)
* Re-order attrset to be more idiomatic
* Format with nixpkgs-fmt
 2020-03-10 20:35:44 +01:00
Josef Kemetmüller
1cc9b2501d suitesparse: Enable parallel building 2020-03-10 17:16:17 +01:00
Mario Rodas
99722af1d5
Merge pull request #81843 from OmnipotentEntity/cudnn-7.6.5 
cudnn_cudatoolkit_10_2: init at 7.6.5
 2020-03-10 07:19:50 -05:00
R. RyanTM
e04fab644f osi: 0.108.4 -> 0.108.6 2020-03-06 07:22:33 +01:00
Michael Reilly
972db874b3 cudnn_cudatoolkit_10_2: init at 7.6.5 2020-03-05 15:14:10 -05:00
Frederik Rietdijk
9d88ee08f6 Merge master into staging-next 2020-02-18 16:09:19 +01:00
Dylan Simon
e25f0b3e3d scalapack: 2.1 -> 2.1.0 
2.1 seems to have disappeared
 2020-02-17 18:31:13 -05:00
Frederik Rietdijk
ec1184f461 Merge master into staging-next 2020-02-17 15:12:28 +01:00
Drew Risinger
c71f63a337 ecos: 2.0.6 -> 2.0.7 
Bump ecos module.
 2020-02-16 19:12:52 -08:00
R. RyanTM
6222192872 openblas: 0.3.7 -> 0.3.8 2020-02-11 12:01:57 +00:00
Anders Kaseorg
1a32e383e6 or-tools: 7.3 -> 7.5 
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2020-02-10 20:40:12 +01:00
R. RyanTM
5659946d6a m4ri: 20200115 -> 20200125 2020-02-08 16:16:48 +00:00
Drew Risinger
c13bf84d45 libraries.science.math.scs: 2.0.2 -> 2.1.1 2020-01-31 16:05:05 -05:00
Frederik Rietdijk
dce0ca29d9 Merge master into staging-next 2020-01-28 10:46:13 +01:00
Timo Kaufmann
e39e304638
Merge pull request #78496 from r-ryantm/auto-update/brial 
brial: 1.2.6 -> 1.2.7
 2020-01-26 23:28:02 +01:00
R. RyanTM
2d172e6403 brial: 1.2.6 -> 1.2.7 2020-01-26 02:39:07 +00:00
Timo Kaufmann
d62e410ccd
Merge pull request #78222 from r-ryantm/auto-update/m4ri 
m4ri: 20140914 -> 20200115
 2020-01-22 17:43:44 +01:00
R. RyanTM
813678058f m4ri: 20140914 -> 20200115 2020-01-21 23:46:57 +00:00
R. RyanTM
3937313195 m4rie: 20150908 -> 20200115 2020-01-21 23:24:43 +00:00
Anders Kaseorg
3cd8ce3bce treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH 
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted.  (See #67234, for
example.)  Fix this throughout the tree.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2020-01-15 09:47:03 +01:00
Niklas Hambüchen
de1e61f34d
Merge pull request #77104 from r-ryantm/auto-update/htslib 
htslib: 1.9 -> 1.10.2
 2020-01-13 01:51:32 +01:00
Mario Rodas
5ab4676d88
Merge pull request #77194 from r-ryantm/auto-update/primesieve 
primesieve: 7.4 -> 7.5
 2020-01-09 05:02:21 -05:00
R. RyanTM
e28fe589d9 primesieve: 7.4 -> 7.5 2020-01-07 00:22:48 -08:00
R. RyanTM
940d12bf5d htslib: 1.9 -> 1.10.2 2020-01-06 09:16:51 -08:00
Mario Rodas
e11aab8340
Merge pull request #76356 from r-ryantm/auto-update/openlibm 
openlibm: 0.6.0 -> 0.7.0
 2020-01-06 09:58:54 -05:00
Frederik Rietdijk
17ab5f9d88 Merge master into staging-next 2020-01-06 10:38:20 +01:00
Ryan Mulligan
f8cd096aad
Merge pull request #54967 from volhovm/volhovm/clmagma 
clmagma: init at 1.3
 2020-01-05 08:18:12 -08:00
Frederik Rietdijk
828f93a326 Merge master into staging-next 2020-01-05 16:00:21 +01:00
markuskowa
1c55261574
Merge pull request #75526 from robertodr/more-mkl 
Add GNU threading and Fortran libraries to MKL package
 2020-01-04 20:36:43 +01:00
Frederik Rietdijk
867552957f openblas: fix static musl build 2020-01-03 12:50:47 +01:00
Frederik Rietdijk
960c24a996
Merge pull request #75798 from tobim/pkgsStatic/arrow 
arrow-cpp: add pkgsStatic support
 2020-01-03 10:13:31 +01:00
Frederik Rietdijk
f08e3e38d4 Merge master into staging-next 2020-01-02 21:41:13 +01:00
Tobias Mayer
db5d3cdfe2 openblas: partially fix static build 2019-12-31 15:05:13 +01:00
Robin Gloster
313da176d3
treewide: NIX_*_FLAGS -> string 2019-12-31 00:16:46 +01:00
Robin Gloster
5f2b92e3ec
treewide: NIX_*_COMPILE -> string 2019-12-31 00:13:29 +01:00
Robin Gloster
2157dcd141
treewide: installFlags is a list 2019-12-30 13:22:43 +01:00
Merijn Broeren
133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Linus Heckemann
2c19725202 mirtk: enable tbb support for multithreading 2019-12-30 01:16:08 +01:00
R. RyanTM
a2a56df6f8 openlibm: 0.6.0 -> 0.7.0 2019-12-23 20:42:29 -08:00
Roberto Di Remigio
153597a320
mkl: filter static libs in installPhase 2019-12-19 10:23:26 +01:00
Roberto Di Remigio
6cc9bbe2fd
mkl: extract static libraries optionally 2019-12-19 10:12:00 +01:00
Roberto Di Remigio
e0605b3174
mkl: add GNU threading and Fortran libraries 
Signed-off-by: Roberto Di Remigio <roberto.diremigio@gmail.com>
 2019-12-19 10:12:00 +01:00
Timo Kaufmann
135081a538 brial: 1.2.5 -> 1.2.6 
Motivation is mostly https://github.com/BRiAl/BRiAl/pull/37, which is a
pre-requiste for getting the sage tests to pass with python3.
 2019-12-13 20:31:31 +01:00
Mateusz Kowalczyk
1451a52a38 Remove myself (fuuzetsu) from maintainer lists 
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
 2019-12-05 16:29:48 +09:00
Dmitry Kalinkin
aa7efea848
Merge pull request #73958 from markuskowa/upd-lapack 
liblapack: 3.8.0 -> 3.9.0
 2019-11-24 20:06:04 -05:00
John Ericson
d0d5136cce Merge remote-tracking branch 'upstream/master' into wrapper-pname-support 2019-11-24 17:25:07 +00:00
John Ericson
9b090ccbca treewide: Get rid of most parseDrvName without breaking compat 
That is because this commit should be merged to both master and
release-19.09.
 2019-11-24 17:22:28 +00:00
Markus Kowalewski
7e44c6dee6
liblapack: 3.8.0 -> 3.9.0 2019-11-24 11:47:50 +01:00
Markus Kowalewski
8419bb2a20
scalapack: 2.0.2 -> 2.1 2019-11-20 22:44:33 +01:00
Renaud
5411dbda33
Merge pull request #71710 from bcdarwin/fix-elastix 
elastix: 4.9.0 -> 5.0.0 (and mark unbroken)
 2019-11-18 23:23:16 +01:00
Ben Darwin
b618730708 elastix: 4.9.0 -> 5.0.0 (and mark unbroken) 2019-11-18 13:29:02 -05:00
markuskowa
7d728faea5
Merge pull request #73227 from markuskowa/fix-mkl 
mkl: add scalapack libraries to output
 2019-11-18 10:46:33 +01:00
Markus Kowalewski
d817a49faa
mkl: add scalapack libraries to output 2019-11-18 09:05:03 +01:00
Ben Darwin
736860d34b nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
Andreas Rammhold
1e72fa5158
Merge pull request #68954 from dguibert/dg/cudatoolkit_10_1 
cudatoolkit: add 10.1.243
 2019-11-06 08:58:30 +01:00
Benjamin Hipple
fa1e275f31 mkl: 2019.3 -> 2019.5 (#71476) 
Includes bugfixes, new features, and performance improvements.

Full release notes here:
https://software.intel.com/en-us/articles/intel-math-kernel-library-release-notes-and-new-features

Leave Darwin on 2019.3 pending resolution of DMG issues
 2019-10-27 15:34:16 -04:00
Sam Stites
f12199614d magma: use cudatoolkit 2019-10-23 10:57:43 -07:00
markuskowa
f6d7f8ae16
Merge pull request #68927 from danieldk/mkl 
mkl: include pkgconfig files
 2019-10-13 19:16:49 +02:00
Linus Heckemann
5aa4b19946 treewide: mark some broken packages as broken 
Refs:
e6754980264fe927320d5ff2dbd24ca4fac9a160
1e9cc5b9844ef603fe160e9f671178f96200774f
793a2fe1e8bb886ca2096c5904e1193dc3268b6d
c19cf65261639f749012454932a532aa7c681e4b
f6544d618f30fae0bc4798c4387a8c7c9c047a7c
 2019-10-08 17:14:26 +02:00
Orivej Desh
2455b2e309 or-tools: 7.0 -> 7.3 2019-10-04 05:17:48 +00:00
Nikolay Amiantov
1c429acbff tensorflow: add OpenGL path to find libcudart 2019-10-02 10:33:31 +03:00
Timo Kaufmann
7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9 
sage: 8.8 -> 8.9
 2019-09-30 11:13:46 +00:00
Joachim F
ad773d31e2
Merge pull request #69345 from joachifm/feat/split-version 
Replace uses of splitString for splitting version strings
 2019-09-27 06:19:18 +00:00
Joachim Fasting
bad07dfac5
tree-wide: replace uses of splitString "." with lib.versions 
Quoting from the splitString docstring:

   NOTE: this function is not performant and should never be used.

This replaces trivial uses of splitString for splitting version
strings with the (potentially builtin) splitVersion.
 2019-09-26 17:42:49 +02:00
Timo Kaufmann
1797c9c295 sage: 8.9.beta9 -> 8.9.rc0 
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
 2019-09-24 17:51:09 +02:00
Matthieu Coudron
d70eba7ab3 ns-3: 3.29 -> 3.30 
Fixes python bindings.
 2019-09-24 00:30:12 +09:00
Daniël de Kok
9f25e95576 mkl: include pkgconfig files 2019-09-22 20:07:34 +02:00
David Guibert
92690a8937 cuddn: add 10.1 (version 7.6.3) 2019-09-17 15:19:41 +02:00
Markus Kowalewski
ecd20d2166
liblapack: remove optimized blas flag. 
This cmake flag has no effect since no external blas
library is provided in the build inputs.
 2019-09-15 11:39:58 +02:00
Markus Kowalewski
fc7374176f
liblapack: build LAPACKE C api 2019-09-15 11:39:58 +02:00
Vladimír Čunát
991c0e1618
treewide: mark packages as buildable on darwin (PR #45364) 
vcunat amended the commit a bit; see the PR for details/discussion.
 2019-09-15 10:50:08 +02:00
Miguel Madrid Mencía
148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
volth
7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
Frederik Rietdijk
5f4734b1dd Merge remote-tracking branch 'upstream/gcc-8' into staging-next 
Earlier the gcc8 branch was merged instead of the gcc-8 branch (note the dash)...
 2019-09-08 20:44:26 +02:00
Frederik Rietdijk
66bc7fc1b3 Merge master into staging-next 2019-09-06 22:46:05 +02:00
tbenst
6d7282d74a magma: 2.0.2 -> 2.5.0 2019-09-06 20:15:10 +02:00
Vladimír Čunát
4aad2947f8
Merge branch 'master' into staging-next 2019-09-04 11:00:56 +02:00
Franz Pletz
de85797565
Merge remote-tracking branch 'origin/master' into gcc-8 2019-09-03 22:15:07 +02:00
idontgetoutmuch
739cdb368e Ensure blas produces pkg config files (#67629) 
blas: produce pkgconfig file
 2019-09-03 16:34:45 +02:00
Mikhail Volkhov
58dffa3459
clmagma: init at 1.3 2019-08-30 22:40:04 +02:00
volth
08f68313a4 treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
Frederik Rietdijk
5061fe0c2c Merge staging-next into staging 2019-08-28 08:26:42 +02:00
volth
35d68ef143 treewide: remove redundant quotes 2019-08-26 21:40:19 +00:00
Robin Gloster
616b8343c4
Merge remote-tracking branch 'upstream/master' into gcc-8 2019-08-25 18:55:46 +02:00
Vladimír Čunát
2e6bf42a22
Merge branch 'master' into staging-next 
There ver very many conflicts, basically all due to
name -> pname+version.  Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job.  There might be some fallback to these
conflicts, but I believe it should be minimal.

Hydra nixpkgs: ?compare=1538299
 2019-08-24 08:55:37 +02:00
R. RyanTM
0ff0c288a8 sympow: 2.023.4 -> 2.023.5 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/sympow/versions
 2019-08-20 21:06:37 -07:00
Markus Kowalewski
6ff8958bef openblas: 0.3.6 -> 0.3.7 2019-08-18 11:49:24 +02:00
volth
c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
Frederik Rietdijk
fe9a3e3e63 Merge staging-next into staging 2019-08-17 09:39:23 +02:00
volth
46420bbaa3 treewide: name -> pname (easy cases) (#66585) 
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
 2019-08-15 13:41:18 +01:00
Gabriel Ebner
a736d87393 spooles: init at 2.2 2019-08-14 19:09:39 +02:00
Timo Kaufmann
5e58c5f900 sympow: 1.018.1 -> 2.023.4 
Maintenance taken over by debian package maintainer jgmbenoit:
https://trac.sagemath.org/ticket/3360#comment:17

This moves sympow to his fork, since there is no offical
version-controlled source repository from the original author and they
do not seem to maintain sympow anymore. We had already accumulated quite
some patches from debian, who have effectively maintained sympow for a
while now.
 2019-08-09 17:45:08 +02:00
Nikolay Amiantov
0a1bf4734f libtensorflow: add binary build and add automatic generation 2019-07-31 13:28:44 +03:00
Orivej Desh
b5d1d50aa9 google-gflags: move to aliases.nix 
google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012

gflags.name will be updated in staging.
 2019-07-25 09:18:32 +00:00
Orivej Desh
5d86f9a9ce nccl: 2.4.2-1 -> 2.4.8-1 2019-07-18 17:04:43 +00:00
Ryan Mulligan
508ae42a0f treewide: fix redirect URLs 2019-07-10 12:52:51 -07:00
Nikolay Amiantov
08b1d81089 osi: init at 0.108.4 2019-06-24 15:59:57 +03:00
R. RyanTM
069f2235af brial: 1.2.4 -> 1.2.5 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/brial/versions
 2019-06-17 13:23:05 +02:00
Franz Pletz
146f9fda2b
papi: fix build with gcc8 2019-06-17 07:25:57 +02:00
volth
f3282c8d1e treewide: remove unused variables (#63177) 
* treewide: remove unused variables

* making ofborg happy
 2019-06-16 19:59:05 +00:00
Dmitry Kalinkin
cbaa9a7ab9
Merge pull request #57947 from smaret/fix-mkl 
mkl: fix install_name on Darwin
 2019-06-06 18:27:30 -04:00
Sébastien Maret
fb883a58df
mkl: fix install_name on Darwin 
Closes #57697

Co-Authored-By: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
 2019-06-04 22:08:48 +02:00
Niklas Hambüchen
8d5864eb47 openblas: Add enableStatic flag 2019-05-28 08:57:23 +02:00
Niklas Hambüchen
43fda1c96d openblas: 0.3.5 -> 0.3.6 2019-05-28 08:57:23 +02:00
Silvan Mosberger
16c66f66ae
scalapack: Increase individual test timeout to prevent hydra failures 2019-05-27 20:08:32 +02:00
Florian Klink
2ed6903da5
libglvnd, ocl-icd, vulkan-loader: Add /run/opengl-driver(-32) to RUNPATH. (#60985) 
libglvnd, ocl-icd, vulkan-loader: Add /run/opengl-driver(-32) to RUNPATH.
 2019-05-22 23:36:01 +02:00
Ambroz Bizjak
28a0918916 Add driver library path to some packages to find CUDA libraries. 
This is to avoid relying on LD_LIBRARY_PATH for finding the CUDA driver libraries.
 2019-05-22 18:34:09 +02:00
Frederik Rietdijk
f137783927 Merge master into staging-next 2019-05-01 11:45:46 +02:00
R. RyanTM
16e1d009e0 ipopt: 3.12.12 -> 3.12.13 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
 2019-05-01 11:11:28 +02:00
Markus Kowalewski
6968c4f305 openblas: turn off AVX512 optimizations 
The AVX512 optimization has a bug in openblas-0.3.5
and can also lead to slower code on Xeon Silver CPUs.

See https://github.com/xianyi/OpenBLAS/issues/1955
and https://github.com/xianyi/OpenBLAS/issues/2029
 2019-04-27 07:07:49 +02:00
Matthew Bauer
87944c3125
Merge pull request #56744 from matthewbauer/macos-10-12 
Update macOS to 10.12
 2019-04-26 22:20:03 -04:00
Matthew Bauer
63831c398a python-fenics: put pytest in nativeBuildInputs 2019-04-26 21:55:10 -04:00
Renaud
6186a6f012
Merge pull request #58484 from sveitser/cudnn-v7.4.2 
cudnn_cudatoolkit_10: 7.3.1 -> 7.4.2
 2019-04-24 22:40:17 +02:00
Daniel Schaefer
bac4d95aa2 treewide: Change URLs to HTTPS 
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
 2019-04-22 10:19:54 +02:00
Mateusz Kowalczyk
575d6a4826
Merge pull request #58417 from andersk/ortools-7.0 
or-tools: 6.10 -> 7.0, add Python bindings
 2019-04-20 17:39:23 +09:00
Matthew Bauer
f475aeaf29
Merge pull request #59535 from matthewbauer/homepage-fixes 
treewide: update homepages to https where available
 2019-04-15 20:47:30 -04:00
Matthew Bauer
290a5d916e treewide: update homepages to https where available 
Based on "problems" from repology:

https://repology.org/repository/nix_unstable/problems

Mostly simple changes to reflect redirects.
 2019-04-15 10:10:05 -04:00
Dmitry Kalinkin
59c81160e7
Merge pull request #58504 from symphorien/static-proot 
Static proot, wafHook cross compilation
 2019-04-13 12:04:32 -04:00
Matthew Bauer
a79a8f29bc waf: use wafConfigureFlags for waf flags 
This avoids the potential conflict between autoconf flags and the waf
flags. There is some overlap between the two but waf errors when it
doesn’t recognize the flag.
 2019-04-09 23:44:37 -04:00
Frederik Rietdijk
d108b49168 Merge master into staging-next 2019-04-09 16:38:35 +02:00
Vladimír Čunát
e1f55599cc
Merge #58589: openblas: fix aarch64 build 2019-04-07 16:58:42 +02:00
Jan Tojnar
cb1a20499a
Merge branch 'master' into staging 2019-04-05 11:37:15 +02:00
Markus Kowalewski
70867a92f6
arpack: fix tests on darwin 2019-04-03 10:48:52 +02:00
Markus Kowalewski
9a60a65249
arpack: 3.6.3 -> 3.7.0 
* switch to FetchFromGitHub
* switch from autotools to cmake
* add eigen to input (is now required)
 2019-04-03 10:48:52 +02:00
Markus Kowalewski
734c6c21cb
mkl: 2019.0.117 -> 2019.3.199 2019-04-01 21:50:23 +02:00
Markus Kowalewski
fa28a838f3
openblas: fix aarch64 build 2019-03-31 12:19:41 +02:00
Markus Kowalewski
4c74ee948e
clblas: turn of gtest, fix build 
clblas does not work anymore with gmock 1.8.1.
Turning off the test suite fixes the build.
 2019-03-29 13:59:45 +01:00
sveitser
e29e315c5f
cudnn_cudatoolkit_10: 7.3.1 -> 7.4.2 2019-03-28 21:49:13 +08:00
Anders Kaseorg
ae6b9dcb0e or-tools: 6.10 -> 7.0 
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2019-03-26 17:04:03 -07:00
Anders Kaseorg
08e9273e29 or-tools: Add Python bindings 
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2019-03-26 17:04:03 -07:00
Wael M. Nasreddine
5af0780492
Merge remote-tracking branch 'origin/master' into staging 
* origin/master: (693 commits)
  buildGoModule: use go_1_12 instead of go_1_11 (#58103)
  gitAndTools.lab: 0.15.2 -> 0.15.3 (#58091)
  signal-desktop: 1.22.0 -> 1.23.0
  added missing semicolon to documentation
  terminus_font_ttf: 4.46.0 -> 4.47.0
  buildGoModule: remove SSL env vars in favor of cacert in buildInputs (#58071)
  dav1d: init at 0.2.1
  dropbox-cli: 2018.11.28 -> 2019.02.14
  atlassian-confluence: 6.14.1 -> 6.14.2
  maintainers: update email for dywedir
  python.pkgs.hglib: use patch to specify hg path (#57926)
  chkrootkit: 0.52 -> 0.53
  radare2-cutter: 1.7.2 -> 1.8.0
  autorandr: 1.7 -> 1.8
  pythonPackages.pyhepmc: fix build
  llvm-polly/clang-polly: use latest llvm
  apulse: 0.1.11.1 -> 0.1.12, cleanup
  factorio: experimental 0.17.14 → 0.17.16 (#58000)
  sequeler: 0.6.7 -> 0.6.8
  nasc: 0.5.1 -> 0.5.2
  ...
 2019-03-21 21:01:25 -07:00
R. RyanTM
e14d70d955 primesieve: 7.3 -> 7.4 (#57375) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/primesieve/versions
 2019-03-12 22:43:56 +01:00
Matthew Bauer
37eba81c7b
Merge pull request #56391 from matthewbauer/cmake-treewide 
Add more CMake flags
 2019-03-11 12:43:46 -04:00
Matthew Bauer
6ed49262f5 treewide: remove BUILD_TESTING flag 
This is now set by CMake
 2019-03-11 10:11:28 -04:00
R. RyanTM
cac06fc53d ipopt: 3.12.11 -> 3.12.12 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
 2019-03-03 20:47:42 +01:00
Averell Dalton
d7806fe4ed openblas: adjust makeFlags handling 2019-02-23 09:13:57 +01:00
Markus Kowalewski
dbf5135385
scalapack: update meta data 
* Set platform from linux -> x86_64-linux
  Scalapack does not seem to run properly on ARM (failing tests)

* Add markuskowa as maintainer
 2019-02-21 15:08:33 +01:00
Markus Kowalewski
4aa90ac089
scalapack: add openmpi4 compatibility patch 2019-02-21 15:08:32 +01:00
Will Dietz
32322da1a6 openblas: fix config breakage introduced for configs using 'false' 
My earlier change mistakenly expected `toString false` to produce '0'
instead of the empty string, leading to unexpected config changes.

Intended to address issue mentioned here and in following discussion:

https://github.com/NixOS/nixpkgs/pull/53972#issuecomment-459981602

Sorry, folks!

(special-case handling of bools here makes this "cleanup" a bit
 less of an obvious win but hopefully still preferable overall :))

-----------

makeFlags in resulting derivation, according to this one-liner:

$ nix show-derivation -f . openblas|jq ".[].env.makeFlags"

before:
"BINARY=64 CC=cc CROSS= DYNAMIC_ARCH=1 FC=gfortran HOSTCC=cc INTERFACE64=1 NO_BINARY_MODE= NO_STATIC=1 NUM_THREADS=64 PREFIX=/1rz4g4znpzjwh1xymhjpm42vipw92pr73vdgl6xs1hycac8kf2n9 TARGET=ATHLON USE_OPENMP=1"

after:
"BINARY=64 CC=cc CROSS=0 DYNAMIC_ARCH=1 FC=gfortran HOSTCC=cc INTERFACE64=1 NO_BINARY_MODE=0 NO_STATIC=1 NUM_THREADS=64 PREFIX=/1rz4g4znpzjwh1xymhjpm42vipw92pr73vdgl6xs1hycac8kf2n9 TARGET=ATHLON USE_OPENMP=1"

Without knowing how `placeholder` works, it seems interesting if
entirely unrelated that the `PREFIX` is same for both! :). TIL.
 2019-02-17 19:51:55 +01:00
Dylan Simon
e69fdc1715 sympow: fix patch url to working revision (#55778) 
fix_pointer_initialization2.patch no longer exists on trunk -- download
from a fixed older revision where it did.
 2019-02-14 21:10:37 +01:00
Matthew Bauer
2433c575f0 openblas: fix on linux 
This reverse changes made cfc4313 which broke builds on linux. Still
not sure why this broke Linux, but we can investigate it later.
“buildPackages.stdenv.cc” shouldn’t be put in nativeBuildInputs in
general. Either way, this restores hashes to before that commit.

thanks to @jethrokuan
 2019-02-10 20:16:16 -05:00
Matthew Bauer
cfc43138cb openblas: fix on darwin 
The openblas script relies on CC=clang for succesfully compiling on
Darwin systems. This seems like bad behavior, but we get things like
https://hydra.nixos.org/build/87657058 otherwise.

Fixes #55536.
 2019-02-10 18:49:04 -05:00
Vladimír Čunát
c40f211499
Merge branch 'staging-next' 
It's not completely without regressions, but ATM it seems to bring more
upsides than downsides and the iteration is too long already.
 2019-02-10 14:20:49 +01:00
Orivej Desh
59cd3ee895 nccl: 2.1.4 -> 2.4.2-1 (#55292) 2019-02-10 01:20:04 +00:00
Vladimír Čunát
ff101946a8
Merge branch 'master' into staging-next 
Hydra nixpkgs: ?compare=1503899
 2019-02-06 14:24:46 +01:00
Guillaume Bouchard
9f0ee6c606 primesieve: init at 7.3 2019-02-04 13:03:50 +01:00
Vladimír Čunát
5effa4e0f9
Merge branch 'master' into staging-next 
Comments on conflicts:
- llvm: d6f401e1 vs. 469ecc70 - docs for 6 and 7 say the default is
  to build all targets, so we should be fine
- some pypi hashes: they were equivalent, just base16 vs. base32
 2019-02-01 09:22:29 +01:00
Markus Kowalewski
57c37456db
openblas: make the optimazation target overridable 2019-01-29 14:34:02 +01:00
Will Dietz
1f0467005d openblas: 0.3.4 -> 0.3.5, rework a bit (#53972) 
* openblas: simplify a bit, fix doCheck so tests are enabled non-cross.

* doCheck should be 'true' in (at least) the non-cross case,
  this looks like an inverted check that's largely benign
* doCheck will be set to 'false' in the cross case anyway,
  makeDerivation does this IIRC
* targetPrefix can be used without checking, probably by design

Derivation hash does change but no "real" functionality change intended.

* openblas: nix types for config attrs (hash-preserving)

* openblas: more nix-ification, merge in cross attrs, prefer to always set

(but set appropriately for cross and non-cross cases both)

* I'm not sure what NO_BINARY_MODE does,
  this change now sets explicitly false in the non-cross scenario
  (previously unset unless cross).
* Drop musl NO_AFFINITY case, will be removed in upgrade shortly

* openblas: 0.3.4 -> 0.3.5
 2019-01-15 16:36:07 +01:00
Frederik Rietdijk
05ee1015bb openblas: fix cross-compilation 2019-01-15 10:11:33 +01:00
Timo Kaufmann
04ba895ecd
suitesparse: 5.3.0 -> 5.4.0 (#53128) 2019-01-01 15:47:55 +01:00
Silvan Mosberger
eb864397a0
Merge pull request #52508 from tkonolige/fix_suitesparse_darwin 
suitesparse: Fix darwin support
 2018-12-31 03:24:48 +01:00
agracie
a3fc481b76 mkl: fix hash on Darwin 2018-12-26 20:57:08 -05:00
Bas van Dijk
72eae72223 openblas: fix build on x86_64-darwin 
See: https://github.com/xianyi/OpenBLAS/issues/1926
 2018-12-20 13:25:44 +01:00
Benjamin Hipple
6206a342e0 mkl: include Intel's libiomp.so in the MKL RPM unpack 
Since Intel's default openmp implementation is available in the same src
tarball, we can just include it in the package. This means that `mkl` now "just
works" without any environment variables, fragile setup-hooks, or forced
propagation.

Since the openmp implementation is only needed at runtime (and for test cases),
users can substitute a different one if they prefer by exporting it with
`LD_PRELOAD`, which is how Intel recommends handling this. If they do not do so,
`libiomp.so` lives next to `libmkl_rt.so` and thus will be in the RPATH as a
sane default.

Since this still comes from the same src tarball, we can ship it without losing
the fixed-output derivation; likewise, since Hydra is not building or caching
these, shipping these proprietary packages costs no bandwidth for the nix
community.
 2018-12-19 22:05:22 +01:00
Tristan Konolige
00005ce0bd suitesparse: Fix darwin support 
Suitesparse libraries would end up containing references to the build
directory. fixDarwinDylibNames appears to not fix this problem. We
manually use intall_name_tool to set the library paths correctly.
 2018-12-18 18:08:17 -07:00
Frederik Rietdijk
4deb04a97a openblas: 0.3.3 -> 0.3.4 2018-12-07 15:21:25 +01:00
Frederik Rietdijk
a510aa2672 Merge master into staging-next 2018-12-03 12:18:43 +01:00
Will Dietz
cd14ad53c3 or-tools: appease warning re:python3, try testing 2018-12-01 13:38:16 -06:00
Will Dietz
046e7980f9 or-tools: parallel 2018-12-01 13:38:16 -06:00
Will Dietz
70c2e88c96 or-tools: touchup 2018-12-01 13:38:16 -06:00
Will Dietz
c4feda8b01 or-tools: v6.9.1 -> v6.10 
https://github.com/google/or-tools/releases/tag/v6.10
 2018-12-01 13:38:16 -06:00
Frederik Rietdijk
fed881e510 Merge staging-next into staging 2018-11-21 12:39:46 +01:00
Matthew Bauer
d492f53faf
Merge pull request #50527 from matthewbauer/ninja-check-phase 
Add check phase to ninja setup hook
 2018-11-20 16:55:12 -06:00
Timo Kaufmann
6059bf842a
Merge pull request #49994 from r-ryantm/auto-update/python3.6-cvxopt 
python36Packages.cvxopt: 1.2.1 -> 1.2.2
 2018-11-20 14:25:43 +01:00
Matthew Bauer
285eb9a894 cmake: set CTEST_OUTPUT_ON_FAILURE globally 
We should always use this.
 2018-11-19 16:16:16 -06:00
Frederik Rietdijk
e343a85cfb Merge master into staging-next 2018-11-19 09:55:32 +01:00
Matthew Bauer
2c47a4229f treewide: remove ctest usages 
These are already in the generated makefiles!
 2018-11-18 19:31:02 -06:00
Matthew Bauer
2c1d3a9a82 Merge remote-tracking branch 'upstream/master' into staging 2018-11-18 19:02:09 -06:00
Orivej Desh
e66d263f6b eigen3_3: move version overrides to all-packages.nix 2018-11-18 10:53:25 +00:00
Frederik Rietdijk
63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
Renaud
cde945a165
Merge pull request #48044 from schneefux/pkg/fetchfromgithub 
treewide: Use fetchFromGitHub instead of fetchurl
 2018-11-14 09:48:22 +01:00
Matthew Bauer
f2a20b6e52 treewide: use wafHook 
Replace "waf" phases with wafHook that manages everything
automatically. Should make things more modular.

Packages affected here are:

- a2jmidid
- ams-lv2
- ardour
- fomp
- guitarix
- ingen
- jalv
- mda-lv2
- non
- patchage
- hamster-time-tracker
- kupfer
- xiphos
- xfce4-dockbarx-plugin
- xfce4-namebar-plugin
- dropbox
- clasp
- aubio
- liliv
- lv2
- lvtk
- ntk
- raul
- sratom
- suil
- ganv
- ndn-cxx
- ns3
- serd
- sord
- termbox
- wxmupen64plus
- jackaudio
- pflask
- blockhash
- glmark2
- weighttp
 2018-11-13 19:13:48 -06:00
Daiderd Jordan
5b8c4b0646
suitesparse: fixup darwin libraries 
The build created libraries with an install_name that points to the
build directory instead of the installation prefix.  Causing errors like
this when other packages try to link against it's libraries.

    Library not loaded: /private/tmp/nix-build-suitesparse-5.3.0.drv-0/SuiteSparse/lib/libcholmod.3.0.12.dylib
 2018-11-13 00:25:32 +01:00
markuskowa
45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00
Markus Kowalewski
06f3676770
scalapack: set platform to linux 2018-11-11 02:17:20 +01:00
markuskowa
bf8c031074
Merge pull request #49199 from markuskowa/fet-scalapack 
scalapack: switch to openblas and add test
 2018-11-05 21:12:01 +01:00
Matthew Bauer
95373d3634 atlas: remove 
atlas is broken and can apparently be removed.

Fixes #49594
 2018-11-04 20:23:12 -06:00
Patrick Hilhorst
4cfeb9da53
cudatoolkit, cudnn: many updates 
cudatoolkit_9_1: 9.1.85.1 -> 9.1.85.3
cudatoolkit_9_2: init at 9.2.148.1
cudatoolkit_9: 9.1.85.1 -> 9.2.148.1
cudatoolkit_10, cudatoolkit_10_0: init at 10.0.130

cudnn_cudatoolkit_9_0: 7.0.5 -> 7.3.0
cudnn_cudatoolkit_9_1: init at 7.1.3
cudnn_cudatoolkit_9_2: init at 7.2.1
cudnn_cudatoolkit_9: 7.0.5 (9.1) -> 7.3.1 (9.2)
cudnn_cudatoolkit_10, cudnn_cudatoolkit_10_0: init at 7.3.1
 2018-10-30 19:09:20 +01:00
Markus Kowalewski
41a579aa68
scalapack: switch to openblas + add test 
* change from blas,lapack to openblas
* add check phase
* enable parallel building
* fix license
 2018-10-27 01:06:07 +02:00
Mateusz Kowalczyk
02fb26136c or-tools: new package (v6.9.1) 2018-10-25 14:15:13 +09:00
Mateusz Kowalczyk
b41f8936b9 QuadProgpp: Add new package. 
Necessary for #48895.
 2018-10-24 09:19:26 +09:00
Michael Raskin
acb7d85993 lrs: init at 7.0 2018-10-23 11:41:29 +03:00
Renaud
0cc07aeee6
Merge pull request #48172 from jluttine/cholmod-extra-1.2.0 
cholmod-extra: init at 1.2.0
 2018-10-21 17:28:30 +02:00
Thomas Tuegel
2e4397f631
Merge pull request #35213 from jluttine/suitesparse-5.1.2 
suitesparse: 4.4.4 -> 5.3.0
 2018-10-20 08:07:27 -05:00
Jörg Thalheim
351319e557
Merge pull request #48419 from r-ryantm/auto-update/ipopt 
ipopt: 3.12.10 -> 3.12.11
 2018-10-15 21:36:42 +01:00
Matthew Bauer
0b298d516a
Merge pull request #47182 from bhipple/add/mkl 
mkl: init at 2019.0.117
 2018-10-15 15:17:57 -05:00