JakeHillion/nixpkgs
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590 Commits

Author SHA1 Message Date
Jan Tojnar
306cf6091f
suitesparse: link against system metis 2020-03-10 21:16:28 +01:00
Jan Tojnar
e9d7774b7b
suitesparse: 5.4.0 → 5.7.1 2020-03-10 21:16:27 +01:00
Jan Tojnar
559f02e208
suitesparse-graphblas: init at 3.1.2 2020-03-10 21:16:27 +01:00
Jan Tojnar
b4e6293a8d
mongoose: init at 2.0.4 2020-03-10 20:35:44 +01:00
Jan Tojnar
40ae28791f
suitesparse: clean up 
* Split to multiple outputs
* Fetch source from GitLab (the only source for future releases)
* Re-order attrset to be more idiomatic
* Format with nixpkgs-fmt
 2020-03-10 20:35:44 +01:00
Josef Kemetmüller
1cc9b2501d suitesparse: Enable parallel building 2020-03-10 17:16:17 +01:00
Mario Rodas
99722af1d5
Merge pull request #81843 from OmnipotentEntity/cudnn-7.6.5 
cudnn_cudatoolkit_10_2: init at 7.6.5
 2020-03-10 07:19:50 -05:00
R. RyanTM
e04fab644f osi: 0.108.4 -> 0.108.6 2020-03-06 07:22:33 +01:00
Michael Reilly
972db874b3 cudnn_cudatoolkit_10_2: init at 7.6.5 2020-03-05 15:14:10 -05:00
Frederik Rietdijk
9d88ee08f6 Merge master into staging-next 2020-02-18 16:09:19 +01:00
Dylan Simon
e25f0b3e3d scalapack: 2.1 -> 2.1.0 
2.1 seems to have disappeared
 2020-02-17 18:31:13 -05:00
Frederik Rietdijk
ec1184f461 Merge master into staging-next 2020-02-17 15:12:28 +01:00
Drew Risinger
c71f63a337 ecos: 2.0.6 -> 2.0.7 
Bump ecos module.
 2020-02-16 19:12:52 -08:00
R. RyanTM
6222192872 openblas: 0.3.7 -> 0.3.8 2020-02-11 12:01:57 +00:00
Anders Kaseorg
1a32e383e6 or-tools: 7.3 -> 7.5 
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2020-02-10 20:40:12 +01:00
R. RyanTM
5659946d6a m4ri: 20200115 -> 20200125 2020-02-08 16:16:48 +00:00
Drew Risinger
c13bf84d45 libraries.science.math.scs: 2.0.2 -> 2.1.1 2020-01-31 16:05:05 -05:00
Frederik Rietdijk
dce0ca29d9 Merge master into staging-next 2020-01-28 10:46:13 +01:00
Timo Kaufmann
e39e304638
Merge pull request #78496 from r-ryantm/auto-update/brial 
brial: 1.2.6 -> 1.2.7
 2020-01-26 23:28:02 +01:00
R. RyanTM
2d172e6403 brial: 1.2.6 -> 1.2.7 2020-01-26 02:39:07 +00:00
Timo Kaufmann
d62e410ccd
Merge pull request #78222 from r-ryantm/auto-update/m4ri 
m4ri: 20140914 -> 20200115
 2020-01-22 17:43:44 +01:00
R. RyanTM
813678058f m4ri: 20140914 -> 20200115 2020-01-21 23:46:57 +00:00
R. RyanTM
3937313195 m4rie: 20150908 -> 20200115 2020-01-21 23:24:43 +00:00
Anders Kaseorg
3cd8ce3bce treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH 
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted.  (See #67234, for
example.)  Fix this throughout the tree.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2020-01-15 09:47:03 +01:00
Niklas Hambüchen
de1e61f34d
Merge pull request #77104 from r-ryantm/auto-update/htslib 
htslib: 1.9 -> 1.10.2
 2020-01-13 01:51:32 +01:00
Mario Rodas
5ab4676d88
Merge pull request #77194 from r-ryantm/auto-update/primesieve 
primesieve: 7.4 -> 7.5
 2020-01-09 05:02:21 -05:00
R. RyanTM
e28fe589d9 primesieve: 7.4 -> 7.5 2020-01-07 00:22:48 -08:00
R. RyanTM
940d12bf5d htslib: 1.9 -> 1.10.2 2020-01-06 09:16:51 -08:00
Mario Rodas
e11aab8340
Merge pull request #76356 from r-ryantm/auto-update/openlibm 
openlibm: 0.6.0 -> 0.7.0
 2020-01-06 09:58:54 -05:00
Frederik Rietdijk
17ab5f9d88 Merge master into staging-next 2020-01-06 10:38:20 +01:00
Ryan Mulligan
f8cd096aad
Merge pull request #54967 from volhovm/volhovm/clmagma 
clmagma: init at 1.3
 2020-01-05 08:18:12 -08:00
Frederik Rietdijk
828f93a326 Merge master into staging-next 2020-01-05 16:00:21 +01:00
markuskowa
1c55261574
Merge pull request #75526 from robertodr/more-mkl 
Add GNU threading and Fortran libraries to MKL package
 2020-01-04 20:36:43 +01:00
Frederik Rietdijk
867552957f openblas: fix static musl build 2020-01-03 12:50:47 +01:00
Frederik Rietdijk
960c24a996
Merge pull request #75798 from tobim/pkgsStatic/arrow 
arrow-cpp: add pkgsStatic support
 2020-01-03 10:13:31 +01:00
Frederik Rietdijk
f08e3e38d4 Merge master into staging-next 2020-01-02 21:41:13 +01:00
Tobias Mayer
db5d3cdfe2 openblas: partially fix static build 2019-12-31 15:05:13 +01:00
Robin Gloster
313da176d3
treewide: NIX_*_FLAGS -> string 2019-12-31 00:16:46 +01:00
Robin Gloster
5f2b92e3ec
treewide: NIX_*_COMPILE -> string 2019-12-31 00:13:29 +01:00
Robin Gloster
2157dcd141
treewide: installFlags is a list 2019-12-30 13:22:43 +01:00
Merijn Broeren
133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Linus Heckemann
2c19725202 mirtk: enable tbb support for multithreading 2019-12-30 01:16:08 +01:00
R. RyanTM
a2a56df6f8 openlibm: 0.6.0 -> 0.7.0 2019-12-23 20:42:29 -08:00
Roberto Di Remigio
153597a320
mkl: filter static libs in installPhase 2019-12-19 10:23:26 +01:00
Roberto Di Remigio
6cc9bbe2fd
mkl: extract static libraries optionally 2019-12-19 10:12:00 +01:00
Roberto Di Remigio
e0605b3174
mkl: add GNU threading and Fortran libraries 
Signed-off-by: Roberto Di Remigio <roberto.diremigio@gmail.com>
 2019-12-19 10:12:00 +01:00
Timo Kaufmann
135081a538 brial: 1.2.5 -> 1.2.6 
Motivation is mostly https://github.com/BRiAl/BRiAl/pull/37, which is a
pre-requiste for getting the sage tests to pass with python3.
 2019-12-13 20:31:31 +01:00
Mateusz Kowalczyk
1451a52a38 Remove myself (fuuzetsu) from maintainer lists 
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
 2019-12-05 16:29:48 +09:00
Dmitry Kalinkin
aa7efea848
Merge pull request #73958 from markuskowa/upd-lapack 
liblapack: 3.8.0 -> 3.9.0
 2019-11-24 20:06:04 -05:00
John Ericson
d0d5136cce Merge remote-tracking branch 'upstream/master' into wrapper-pname-support 2019-11-24 17:25:07 +00:00
John Ericson
9b090ccbca treewide: Get rid of most parseDrvName without breaking compat 
That is because this commit should be merged to both master and
release-19.09.
 2019-11-24 17:22:28 +00:00
Markus Kowalewski
7e44c6dee6
liblapack: 3.8.0 -> 3.9.0 2019-11-24 11:47:50 +01:00
Markus Kowalewski
8419bb2a20
scalapack: 2.0.2 -> 2.1 2019-11-20 22:44:33 +01:00
Renaud
5411dbda33
Merge pull request #71710 from bcdarwin/fix-elastix 
elastix: 4.9.0 -> 5.0.0 (and mark unbroken)
 2019-11-18 23:23:16 +01:00
Ben Darwin
b618730708 elastix: 4.9.0 -> 5.0.0 (and mark unbroken) 2019-11-18 13:29:02 -05:00
markuskowa
7d728faea5
Merge pull request #73227 from markuskowa/fix-mkl 
mkl: add scalapack libraries to output
 2019-11-18 10:46:33 +01:00
Markus Kowalewski
d817a49faa
mkl: add scalapack libraries to output 2019-11-18 09:05:03 +01:00
Ben Darwin
736860d34b nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
Andreas Rammhold
1e72fa5158
Merge pull request #68954 from dguibert/dg/cudatoolkit_10_1 
cudatoolkit: add 10.1.243
 2019-11-06 08:58:30 +01:00
Benjamin Hipple
fa1e275f31 mkl: 2019.3 -> 2019.5 (#71476) 
Includes bugfixes, new features, and performance improvements.

Full release notes here:
https://software.intel.com/en-us/articles/intel-math-kernel-library-release-notes-and-new-features

Leave Darwin on 2019.3 pending resolution of DMG issues
 2019-10-27 15:34:16 -04:00
Sam Stites
f12199614d magma: use cudatoolkit 2019-10-23 10:57:43 -07:00
markuskowa
f6d7f8ae16
Merge pull request #68927 from danieldk/mkl 
mkl: include pkgconfig files
 2019-10-13 19:16:49 +02:00
Linus Heckemann
5aa4b19946 treewide: mark some broken packages as broken 
Refs:
e6754980264fe927320d5ff2dbd24ca4fac9a160
1e9cc5b9844ef603fe160e9f671178f96200774f
793a2fe1e8bb886ca2096c5904e1193dc3268b6d
c19cf65261639f749012454932a532aa7c681e4b
f6544d618f30fae0bc4798c4387a8c7c9c047a7c
 2019-10-08 17:14:26 +02:00
Orivej Desh
2455b2e309 or-tools: 7.0 -> 7.3 2019-10-04 05:17:48 +00:00
Nikolay Amiantov
1c429acbff tensorflow: add OpenGL path to find libcudart 2019-10-02 10:33:31 +03:00
Timo Kaufmann
7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9 
sage: 8.8 -> 8.9
 2019-09-30 11:13:46 +00:00
Joachim F
ad773d31e2
Merge pull request #69345 from joachifm/feat/split-version 
Replace uses of splitString for splitting version strings
 2019-09-27 06:19:18 +00:00
Joachim Fasting
bad07dfac5
tree-wide: replace uses of splitString "." with lib.versions 
Quoting from the splitString docstring:

   NOTE: this function is not performant and should never be used.

This replaces trivial uses of splitString for splitting version
strings with the (potentially builtin) splitVersion.
 2019-09-26 17:42:49 +02:00
Timo Kaufmann
1797c9c295 sage: 8.9.beta9 -> 8.9.rc0 
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
 2019-09-24 17:51:09 +02:00
Matthieu Coudron
d70eba7ab3 ns-3: 3.29 -> 3.30 
Fixes python bindings.
 2019-09-24 00:30:12 +09:00
Daniël de Kok
9f25e95576 mkl: include pkgconfig files 2019-09-22 20:07:34 +02:00
David Guibert
92690a8937 cuddn: add 10.1 (version 7.6.3) 2019-09-17 15:19:41 +02:00
Markus Kowalewski
ecd20d2166
liblapack: remove optimized blas flag. 
This cmake flag has no effect since no external blas
library is provided in the build inputs.
 2019-09-15 11:39:58 +02:00
Markus Kowalewski
fc7374176f
liblapack: build LAPACKE C api 2019-09-15 11:39:58 +02:00
Vladimír Čunát
991c0e1618
treewide: mark packages as buildable on darwin (PR #45364) 
vcunat amended the commit a bit; see the PR for details/discussion.
 2019-09-15 10:50:08 +02:00
Miguel Madrid Mencía
148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
volth
7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
Frederik Rietdijk
5f4734b1dd Merge remote-tracking branch 'upstream/gcc-8' into staging-next 
Earlier the gcc8 branch was merged instead of the gcc-8 branch (note the dash)...
 2019-09-08 20:44:26 +02:00
Frederik Rietdijk
66bc7fc1b3 Merge master into staging-next 2019-09-06 22:46:05 +02:00
tbenst
6d7282d74a magma: 2.0.2 -> 2.5.0 2019-09-06 20:15:10 +02:00
Vladimír Čunát
4aad2947f8
Merge branch 'master' into staging-next 2019-09-04 11:00:56 +02:00
Franz Pletz
de85797565
Merge remote-tracking branch 'origin/master' into gcc-8 2019-09-03 22:15:07 +02:00
idontgetoutmuch
739cdb368e Ensure blas produces pkg config files (#67629) 
blas: produce pkgconfig file
 2019-09-03 16:34:45 +02:00
Mikhail Volkhov
58dffa3459
clmagma: init at 1.3 2019-08-30 22:40:04 +02:00
volth
08f68313a4 treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
Frederik Rietdijk
5061fe0c2c Merge staging-next into staging 2019-08-28 08:26:42 +02:00
volth
35d68ef143 treewide: remove redundant quotes 2019-08-26 21:40:19 +00:00
Robin Gloster
616b8343c4
Merge remote-tracking branch 'upstream/master' into gcc-8 2019-08-25 18:55:46 +02:00
Vladimír Čunát
2e6bf42a22
Merge branch 'master' into staging-next 
There ver very many conflicts, basically all due to
name -> pname+version.  Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job.  There might be some fallback to these
conflicts, but I believe it should be minimal.

Hydra nixpkgs: ?compare=1538299
 2019-08-24 08:55:37 +02:00
R. RyanTM
0ff0c288a8 sympow: 2.023.4 -> 2.023.5 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/sympow/versions
 2019-08-20 21:06:37 -07:00
Markus Kowalewski
6ff8958bef openblas: 0.3.6 -> 0.3.7 2019-08-18 11:49:24 +02:00
volth
c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
Frederik Rietdijk
fe9a3e3e63 Merge staging-next into staging 2019-08-17 09:39:23 +02:00
volth
46420bbaa3 treewide: name -> pname (easy cases) (#66585) 
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
 2019-08-15 13:41:18 +01:00
Gabriel Ebner
a736d87393 spooles: init at 2.2 2019-08-14 19:09:39 +02:00
Timo Kaufmann
5e58c5f900 sympow: 1.018.1 -> 2.023.4 
Maintenance taken over by debian package maintainer jgmbenoit:
https://trac.sagemath.org/ticket/3360#comment:17

This moves sympow to his fork, since there is no offical
version-controlled source repository from the original author and they
do not seem to maintain sympow anymore. We had already accumulated quite
some patches from debian, who have effectively maintained sympow for a
while now.
 2019-08-09 17:45:08 +02:00
Nikolay Amiantov
0a1bf4734f libtensorflow: add binary build and add automatic generation 2019-07-31 13:28:44 +03:00
Orivej Desh
b5d1d50aa9 google-gflags: move to aliases.nix 
google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012

gflags.name will be updated in staging.
 2019-07-25 09:18:32 +00:00
Orivej Desh
5d86f9a9ce nccl: 2.4.2-1 -> 2.4.8-1 2019-07-18 17:04:43 +00:00
Ryan Mulligan
508ae42a0f treewide: fix redirect URLs 2019-07-10 12:52:51 -07:00