JakeHillion/nixpkgs
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07bf8a26b7
Commit Graph

322 Commits

Author SHA1 Message Date
Justin Bedo
07bf8a26b7
rPackages.x13binary: mark broken 2021-10-11 22:26:11 +11:00
Justin Bedo
a50b96d990
rPackages.ggiraph: fix build 2021-10-11 22:21:25 +11:00
Justin Bedo
e6bf94c615
rPackages.OmnipathR: fix build 2021-10-11 22:11:22 +11:00
Justin Bedo
7f9e8c1d42
rPackages.NetLogoR: mark as broken 2021-10-11 22:10:41 +11:00
Justin Bedo
2ab8998641
rPackages.MatchIt: backport build patch 2021-10-11 22:10:41 +11:00
Justin Bedo
22e4ee209e
rPackages: unpin all GSL 1 dependencies 
All packages now successfully build against current GSL.
 2021-10-11 22:10:41 +11:00
Justin Bedo
5e49d8461a
rPackages.rgl: mark as broken 2021-10-11 22:10:40 +11:00
Thomas Churchman
c417b44d83
rPackages: introduce packagesRequiringHome override 
Some R packages require access to a home directory to pass install tests. Extend
r-modules to allow creating a temporary home directory for packages with
such requirements.
 2021-10-11 18:23:42 +11:00
Peter Simons
d8e6e07af0 r-httpuv: add missing zlib.dev dependency to fix the build 2021-10-04 08:04:02 +02:00
Justin Bedo
831fa2f7b9
rPackages.csaw: fix build 2021-09-27 18:17:57 +10:00
Justin Bedo
5ed5a62cae
rPackages.Rhtslib: passthrough libcurl to dependents correctly 2021-09-27 18:17:52 +10:00
Justin Bedo
a0802ef5a5
rPackages.gaston: fix build 2021-09-27 18:17:45 +10:00
Justin Bedo
ff0b840c6c
rPackages.Rbowtie: fix build 2021-09-27 18:17:40 +10:00
Justin Bedo
c60aa79a64
rPackages.spp: fix build 2021-09-27 18:17:35 +10:00
Justin Bedo
2bed59ab86
rPackages.loon: fix build 2021-09-27 18:17:30 +10:00
Justin Bedo
17ffaf2a07
rPackages.arrangements: fix build 2021-09-27 18:17:24 +10:00
Justin Bedo
1af3c32897
rPackages.sodium: fix build 2021-09-27 18:17:19 +10:00
Justin Bedo
e1c796341a
rPackages.bio3d: fix build 2021-09-27 18:17:12 +10:00
Justin Bedo
ff6652c17c
rPackages.vcfR: fix build 2021-09-27 18:17:07 +10:00
Justin Bedo
d17b097899
rPackages.ggbio: fix build 2021-09-27 18:17:00 +10:00
Justin Bedo
fcd7af4a53
rPackages.qpdf: fix build 2021-09-27 18:16:54 +10:00
Justin Bedo
6df27f3109
rPackages.writexl: add zlib dependency 2021-09-27 18:16:48 +10:00
Justin Bedo
353fea8792
rPackages.bbl: add missing gsl dependency 2021-09-27 18:16:39 +10:00
Justin Bedo
3f72620275
rPackages.ArrayExpressHTS: add missing buildInputs 2021-09-27 18:16:32 +10:00
Justin Bedo
85f963caca
rPackages.s2: add missing buildInput 2021-09-27 18:16:25 +10:00
Justin Bedő
6f333e8723
Merge pull request #136964 from jbedo/rPackages-RclusTool 
rPackages.RclusTool: add to packges requiring X
 2021-09-25 22:33:42 +10:00
Justin Bedő
29595eba18
Merge pull request #127790 from PhDyellow/r_bioc_updater_revised 
r-modules: R bioc updater revised
 2021-09-16 09:36:18 +00:00
Phil Dyer
96eb04ef7a rPackages: improve formatting in default.nix 2021-09-15 11:17:41 +10:00
Maciej Krüger
a286dc9ef2
rPackages.RMySQL: fix package 2021-09-13 13:50:35 +02:00
Justin Bedo
006c32f161
rPackages.RclusTool: add to packges requiring X 2021-09-07 16:34:43 +10:00
Justin Bedo
6af74c9ff8
rPackages.ssh: include missing libssh buildInput 2021-09-07 11:32:15 +10:00
Phil Dyer
174c5e166e r-modules: revert changes to lwgeom 2021-08-24 21:16:51 +10:00
Phil Dyer
d7ac07cdbb r-modules: fix r package build failures 
r-modules: fix r package system dependencies

r-modules: fix terra package dependencies

r-modules: fix edge case for R package import

The R package "import" has a name that clashes
with the nix function "import". The package
name in nixpkgs is correctly modified to
avoid the clash, but the name of the
R package was also being changed in
cran-packages.nix, which broke downloading
of the package.

cran-packages.nix has been manually patched,
and genreate-r-packages.R has been fixed so
future automatic updates will succeed.

r-modules: fix repeated `pkgs.` and svglite
 2021-08-24 09:11:14 +10:00
Josh Moller-Mara
f787c0b130 rPackages.rsvg: fix build 
rsvg needs pkg-config and development headers from librsvg to build
 2021-08-17 22:59:19 -07:00
Artturi
1f8e01479b
Merge pull request #125556 from ivan-tkatchev/rhdf5 
rhdf5: fix build (#125101)
 2021-08-07 02:29:52 +03:00
Manuel Bärenz
4e75706a46 rPackages.svglite: Fix nativeBuildInputs 2021-06-30 00:03:02 -07:00
Peter Simons
53b797c185
Merge pull request #121819 from Jake-Gillberg/bump-r-cran 
bump R packages
 2021-06-24 16:41:01 +02:00
Ivan Tkatchev
2854b52437
rPackages.hdf5r: add missing depedency on pkgs.hdf5 (#125549) 
Co-authored-by: Ivan Tkatchev <tkatchev@gmail.com>
 2021-06-06 02:12:22 +02:00
Ivan Tkatchev
634ac0e565 rhdf5: fix build (#125101) 2021-06-03 22:29:59 +03:00
Alvar Penning
8bf4f7e2f3 rPackages.lwgeom: fix build 2021-05-24 19:09:06 +02:00
Florian Beeres
7ee9a6642b rPackages.RcppArmadillo: fix darwin 
RcppArmadillo requires libiconv on darwin to build successfully
 2021-05-17 17:40:04 +02:00
Jake Gillberg
dbe770ed1e remove references to archived CRAN packages 2021-05-06 23:16:20 -04:00
Sandro Jäckel
3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
Samuel Gräfenstein
819ab46fe7
treewide: pkgconfig -> pkg-config 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:19 +01:00
Peter Simons
64b5504939 r-arrow: add missing arrow-cpp dependency to the build 
See https://github.com/NixOS/nixpkgs/issues/81761 for further details.
 2021-02-16 12:47:21 +01:00
Markus Kowalewski
6dba41fbcb
mpi: use mpi attribute consistently as the default MPI implementations 
Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
 {
   mpi = super.mpich;
 }

All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}
 2021-01-23 12:15:13 +01:00
Peter Simons
74c2af4ca7
Merge pull request #110050 from PhDyellow/master_plus_patches_3 
r-modules: fix gert build
 2021-01-20 09:05:51 +01:00
Jonathan Ringer
9bb3fccb5b treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix 
continuation of #109595

pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.

python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
 2021-01-19 01:16:25 -08:00
Peter Simons
a15e4b69e7
Merge pull request #93590 from lblasc/r-packages 
R: remove qtbase.patch and fix few CRAN packages
 2021-01-18 21:22:57 +01:00
Phil Dyer
a10b00e080 r-modules: fix gert build 
gert requires pkgs.libgit2 to build.
 2021-01-18 20:49:27 +10:00