R: update list of broken packages (and some cosmetic)
This commit is contained in:
Peter Simons
parent
430cbcfd2b
commit
85a9e6dcdf
@ -106,4 +106,3 @@ nix-build test-evaluation.nix --dry-run
|
||||
```
|
||||
|
||||
If this exits fine, the expression is ok. If not, you have to edit `default.nix`
|
||||
|
||||
|
||||
@ -694,21 +694,27 @@ let
|
||||
"acs" # build is broken
|
||||
"agRee" # depends on broken package BRugs-0.8-6
|
||||
"aLFQ" # depends on broken package bio3d-2.3-1
|
||||
"anamiR" # depends on broken package RMySQL-0.10.11
|
||||
"AneuFinder" # depends on broken package Rhtslib-1.6.0
|
||||
"animation" # build is broken
|
||||
"anim_plots" # depends on broken package animation-2.4
|
||||
"annmap" # depends on broken package RMySQL-0.10.9
|
||||
"apaStyle" # depends on broken package gdtools-0.1.3
|
||||
"apaTables" # depends on broken package OpenMx-2.7.4
|
||||
"aptg" # depends on broken package brranching-0.2.0
|
||||
"ArrayExpressHTS" # build is broken
|
||||
"arrayQualityMetrics" # build is broken
|
||||
"auRoc" # depends on broken package OpenMx-2.7.4
|
||||
"bamsignals" # depends on broken package Rhtslib-1.6.0
|
||||
"BatchQC" # build is broken
|
||||
"bayesCL" # build is broken
|
||||
"bayou" # depends on broken package animation-2.4
|
||||
"bedr" # build is broken
|
||||
"BETS" # build is broken
|
||||
"BiGGR" # depends on broken package rsbml-2.30.0
|
||||
"bio3d" # build is broken
|
||||
"bioassayR" # depends on broken package ChemmineR-2.24.2
|
||||
"bioCancer" # depends on broken package covr-2.2.2
|
||||
"biomformat" # depends on broken package r-rhdf5-2.16.0
|
||||
"biotools" # depends on broken package rpanel-1.1-3
|
||||
"birte" # build is broken
|
||||
@ -730,6 +736,8 @@ let
|
||||
"categoryCompare" # depends on broken package RCytoscape-1.21.1
|
||||
"Causata" # depends on broken package RMySQL-0.10.9
|
||||
"cdcfluview" # depends on broken package V8-1.2
|
||||
"CexoR" # depends on broken package Rhtslib-1.6.0
|
||||
"ChAMP" # depends on broken package goseq-1.26.0
|
||||
"ChemmineDrugs" # depends on broken package ChemmineR-2.24.2
|
||||
"ChemmineR" # build is broken
|
||||
"chinese_misc" # build is broken
|
||||
@ -759,11 +767,13 @@ let
|
||||
"ctsem" # depends on broken package OpenMx-2.7.4
|
||||
"cudaBayesreg" # build is broken
|
||||
"cytofkit" # depends on broken package flowCore-1.38.2
|
||||
"CytoML" # depends on broken package flowCore-1.40.6
|
||||
"daff" # depends on broken package V8-1.2
|
||||
"dagbag" # build is broken
|
||||
"dagitty" # depends on broken package V8-1.2
|
||||
"dagLogo" # depends on broken package MotIV-1.28.0
|
||||
"DAISIE" # depends on broken package animation-2.4
|
||||
"DataEntry" # build is broken
|
||||
"dataMaid" # build is broken
|
||||
"dataone" # build is broken
|
||||
"datapack" # build is broken
|
||||
@ -772,7 +782,9 @@ let
|
||||
"DCM" # build is broken
|
||||
"DDD" # depends on broken package animation-2.4
|
||||
"deBInfer" # depends on broken package PBSddesolve-1.12.2
|
||||
"debrowser" # depends on broken package V8-1.4
|
||||
"DecisionCurve" # build is broken
|
||||
"DeepBlueR" # build is broken
|
||||
"deepSNV" # build is broken
|
||||
"DEGraph" # depends on broken package RCytoscape-1.21.1
|
||||
"DEploid" # build is broken
|
||||
@ -795,11 +807,14 @@ let
|
||||
"euroMix" # build is broken
|
||||
"evobiR" # depends on broken package animation-2.4
|
||||
"exifr" # build is broken
|
||||
"ExperimentHubData" # build is broken
|
||||
"exprso" # build is broken
|
||||
"fastR" # build is broken
|
||||
"fCCAC" # depends on broken package Rhtslib-1.6.0
|
||||
"fdq" # depends on broken package gdtools-0.1.3
|
||||
"Fgmutils" # depends on broken package gdtools-0.1.3
|
||||
"flan" # build is broken
|
||||
"flextable" # depends on broken package gdtools-0.1.4
|
||||
"flowAI" # depends on broken package r-flowCore-1.38.2
|
||||
"flowBeads" # depends on broken package r-flowCore-1.38.2
|
||||
"flowBin" # depends on broken package r-flowCore-1.38.2
|
||||
@ -816,6 +831,7 @@ let
|
||||
"flowMeans" # depends on broken package r-flowCore-1.38.2
|
||||
"flowMerge" # depends on broken package r-flowCore-1.38.2
|
||||
"flowPeaks" # build is broken
|
||||
"flowPloidy" # depends on broken package flowCore-1.40.6
|
||||
"flowQB" # depends on broken package r-flowCore-1.38.2
|
||||
"flowQ" # depends on broken package flowCore-1.38.2
|
||||
"FlowSOM" # depends on broken package r-flowCore-1.38.2
|
||||
@ -842,6 +858,8 @@ let
|
||||
"gazepath" # build is broken
|
||||
"gdtools" # build is broken
|
||||
"GENE_E" # depends on broken package r-rhdf5-2.16.0
|
||||
"GenoGAM" # build is broken
|
||||
"genomation" # depends on broken package Rhtslib-1.6.0
|
||||
"geojson" # depends on broken package r-protolite-1.5
|
||||
"geojsonio" # depends on broken package V8-1.2
|
||||
"geojsonlint" # depends on broken package V8-1.2
|
||||
@ -849,18 +867,22 @@ let
|
||||
"gfer" # depends on broken package V8-1.2
|
||||
"ggcyto" # depends on broken package r-flowCore-1.38.2
|
||||
"ggghost" # depends on broken package animation-2.4
|
||||
"ggimage" # depends on broken package gridGraphics-0.1-5
|
||||
"ggiraph" # depends on broken package gdtools-0.1.3
|
||||
"ggiraphExtra" # depends on broken package gdtools-0.1.3
|
||||
"ggseas" # build is broken
|
||||
"gmapR" # build is broken
|
||||
"gmatrix" # depends on broken package cudatoolkit-8.0.61
|
||||
"gMCP" # build is broken
|
||||
"gmDatabase" # depends on broken package RMySQL-0.10.9
|
||||
"gmum_r" # build is broken
|
||||
"googleformr" # build is broken
|
||||
"goseq" # build is broken
|
||||
"gpg" # build is broken
|
||||
"gpuR" # build is broken
|
||||
"gputools" # depends on broken package cudatoolkit-8.0.61
|
||||
"GraphPAC" # build is broken
|
||||
"greengenes13_5MgDb" # build is broken
|
||||
"gridGraphics" # build is broken
|
||||
"GSCA" # depends on broken package r-rhdf5-2.16.0
|
||||
"GUIDE" # depends on broken package rpanel-1.1-3
|
||||
@ -870,11 +892,14 @@ let
|
||||
"harrietr" # build is broken
|
||||
"HDF5Array" # depends on broken package r-rhdf5-2.16.0
|
||||
"healthyFlowData" # depends on broken package r-flowCore-1.38.2
|
||||
"hexSticker" # depends on broken package gridGraphics-0.1-5
|
||||
"HierO" # build is broken
|
||||
"HilbertVisGUI" # build is broken
|
||||
"HiPLARM" # build is broken
|
||||
"hisse" # depends on broken package animation-2.4
|
||||
"hoardeR" # depends on broken package Rhtslib-1.6.0
|
||||
"homomorpheR" # depends on broken package sodium-0.4
|
||||
"HTSeqGenie" # depends on broken package gmapR-1.16.0
|
||||
"HTSSIP" # depends on broken package r-rhdf5-2.16.0
|
||||
"idm" # depends on broken package animation-2.4
|
||||
"ifaTools" # depends on broken package OpenMx-2.7.4
|
||||
@ -882,6 +907,7 @@ let
|
||||
"IHWpaper" # depends on broken package r-lpsymphony-1.0.2
|
||||
"IlluminaHumanMethylation450k_db" # build is broken
|
||||
"immunoClust" # depends on broken package r-flowCore-1.38.2
|
||||
"imputeR" # depends on broken package ridge-2.2
|
||||
"intansv" # build is broken
|
||||
"interactiveDisplay" # build is broken
|
||||
"ionicons" # depends on broken package rsvg-1.0
|
||||
@ -894,8 +920,10 @@ let
|
||||
"KoNLP" # build is broken
|
||||
"largeList" # build is broken
|
||||
"largeVis" # build is broken
|
||||
"lavaan_shiny" # depends on broken package OpenMx-2.7.10
|
||||
"lawn" # depends on broken package V8-1.2
|
||||
"LCMCR" # build is broken
|
||||
"LeArEst" # depends on broken package opencpu-1.6.1
|
||||
"lefse" # build is broken
|
||||
"lfe" # build is broken
|
||||
"lgcp" # depends on broken package rpanel-1.1-3
|
||||
@ -918,6 +946,7 @@ let
|
||||
"MBESS" # depends on broken package OpenMx-2.7.4
|
||||
"mBvs" # build is broken
|
||||
"mcaGUI" # build is broken
|
||||
"mcPAFit" # build is broken
|
||||
"mdsr" # depends on broken package RMySQL-0.10.9
|
||||
"Mediana" # depends on broken package gdtools-0.1.3
|
||||
"melviewr" # build is broken
|
||||
@ -928,12 +957,14 @@ let
|
||||
"metagear" # build is broken
|
||||
"MetaIntegrator" # depends on broken package RMySQL-0.10.9
|
||||
"metaSEM" # depends on broken package OpenMx-2.7.4
|
||||
"methylKit" # depends on broken package Rhtslib-1.6.0
|
||||
"MigClim" # build is broken
|
||||
"minimist" # depends on broken package V8-1.2
|
||||
"miscF" # depends on broken package BRugs-0.8-6
|
||||
"mixlink" # build is broken
|
||||
"MLSeq" # build is broken
|
||||
"mmnet" # build is broken
|
||||
"MODIStsp" # build is broken
|
||||
"MonetDBLite" # build is broken
|
||||
"mongolite" # build is broken
|
||||
"monogeneaGM" # depends on broken package animation-2.4
|
||||
@ -960,7 +991,9 @@ let
|
||||
"ndjson" # build is broken
|
||||
"ndtv" # depends on broken package animation-2.4
|
||||
"NetRep" # depends on broken package r-RhpcBLASctl-0.15-148
|
||||
"networkBMA" # build is broken
|
||||
"nlts" # build is broken
|
||||
"normr" # depends on broken package Rhtslib-1.6.0
|
||||
"NORRRM" # build is broken
|
||||
"odbc" # build is broken
|
||||
"officer" # depends on broken package gdtools-0.1.3
|
||||
@ -970,10 +1003,12 @@ let
|
||||
"OpenMx" # build is broken
|
||||
"optbdmaeAT" # build is broken
|
||||
"optBiomarker" # depends on broken package rpanel-1.1-3
|
||||
"optrcdmaeAT" # build is broken
|
||||
"ora" # depends on broken package ROracle-1.3-1
|
||||
"OUwie" # depends on broken package animation-2.4
|
||||
"PAA" # build is broken
|
||||
"paleotree" # depends on broken package animation-2.4
|
||||
"PathoStat" # depends on broken package BatchQC-1.2.1
|
||||
"PathSelectMP" # build is broken
|
||||
"PatternClass" # build is broken
|
||||
"PBD" # depends on broken package animation-2.4
|
||||
@ -990,6 +1025,7 @@ let
|
||||
"PGA" # build is broken
|
||||
"PGPC" # depends on broken package ChemmineR-2.24.2
|
||||
"ph2bye" # depends on broken package animation-2.4
|
||||
"PharmacoGx" # build is broken
|
||||
"PhyInformR" # depends on broken package animation-2.4
|
||||
"phylocurve" # depends on broken package animation-2.4
|
||||
"phyloseq" # depends on broken package r-rhdf5-2.16.0
|
||||
@ -999,6 +1035,7 @@ let
|
||||
"PING" # depends on broken package PICS-2.16.0
|
||||
"plateCore" # depends on broken package r-flowCore-1.38.2
|
||||
"plfMA" # build is broken
|
||||
"plink" # build is broken
|
||||
"podkat" # build is broken
|
||||
"PottsUtils" # depends on broken package BRugs-0.8-6
|
||||
"powell" # build is broken
|
||||
@ -1036,8 +1073,10 @@ let
|
||||
"raptr" # depends on broken package PBSmapping-2.69.76
|
||||
"RbioRXN" # depends on broken package ChemmineR-2.24.2
|
||||
"Rblpapi" # build is broken
|
||||
"RCAS" # depends on broken package Rhtslib-1.6.0
|
||||
"Rchemcpp" # depends on broken package ChemmineR-2.24.2
|
||||
"rchess" # depends on broken package V8-1.2
|
||||
"RchivalTag" # depends on broken package PBSmapping-2.69.76
|
||||
"RchyOptimyx" # depends on broken package r-flowCore-1.38.2
|
||||
"RcmdrPlugin_FuzzyClust" # build is broken
|
||||
"RcmdrPlugin_PcaRobust" # build is broken
|
||||
@ -1050,6 +1089,7 @@ let
|
||||
"rcqp" # build is broken
|
||||
"rcrypt" # build is broken
|
||||
"RCytoscape" # build is broken
|
||||
"rdataretriever" # build is broken
|
||||
"rDEA" # build is broken
|
||||
"RDieHarder" # build is broken
|
||||
"REBayes" # depends on broken package Rmosek-1.2.5.1
|
||||
@ -1065,8 +1105,10 @@ let
|
||||
"Rgnuplot" # build is broken
|
||||
"rgp" # build is broken
|
||||
"rgpui" # depends on broken package rgp-0.4-1
|
||||
"rgsepd" # depends on broken package goseq-1.26.0
|
||||
"rhdf5" # build is broken
|
||||
"RhpcBLASctl" # build is broken
|
||||
"Rhtslib" # build is broken
|
||||
"ridge" # build is broken
|
||||
"rjade" # depends on broken package V8-1.2
|
||||
"rJPSGCS" # build is broken
|
||||
@ -1079,9 +1121,12 @@ let
|
||||
"rmapshaper" # depends on broken package V8-1.2
|
||||
"rMAT" # build is broken
|
||||
"Rmosek" # build is broken
|
||||
"rmumps" # build is broken
|
||||
"RMySQL" # build is broken
|
||||
"rnaturalearth" # depends on broken package sf-0.4-1
|
||||
"RnavGraph" # build is broken
|
||||
"rnetcarto" # build is broken
|
||||
"ROI_plugin_clp" # depends on broken package clpAPI-1.2.7
|
||||
"ROI_plugin_cplex" # depends on broken package Rcplex-0.3-3
|
||||
"ROI_plugin_symphony" # depends on broken package Rsymphony-0.1-26
|
||||
"ROracle" # build is broken
|
||||
@ -1092,6 +1137,7 @@ let
|
||||
"Rphylopars" # depends on broken package animation-2.4
|
||||
"Rpoppler" # build is broken
|
||||
"RQuantLib" # build is broken
|
||||
"Rsampletrees" # build is broken
|
||||
"RSAP" # build is broken
|
||||
"rsbml" # build is broken
|
||||
"RSCABS" # build is broken
|
||||
@ -1110,6 +1156,7 @@ let
|
||||
"s2" # build is broken
|
||||
"sapFinder" # build is broken
|
||||
"sbrl" # build is broken
|
||||
"SC3" # depends on broken package scater-1.2.0
|
||||
"scater" # depends on broken package r-rhdf5-2.16.0
|
||||
"scran" # depends on broken package r-rhdf5-2.16.0
|
||||
"SDD" # depends on broken package rpanel-1.1-3
|
||||
@ -1117,6 +1164,7 @@ let
|
||||
"seasonalview" # build is broken
|
||||
"Sejong" # build is broken
|
||||
"SemiCompRisks" # build is broken
|
||||
"semPlot" # depends on broken package OpenMx-2.7.10
|
||||
"semtree" # depends on broken package OpenMx-2.7.4
|
||||
"seqbias" # build is broken
|
||||
"SeqGrapheR" # build is broken
|
||||
@ -1129,6 +1177,7 @@ let
|
||||
"SimInf" # build is broken
|
||||
"simsalapar" # build is broken
|
||||
"smapr" # depends on broken package r-rhdf5-2.16.0
|
||||
"SMITE" # depends on broken package goseq-1.26.0
|
||||
"SnakeCharmR" # build is broken
|
||||
"sodium" # build is broken
|
||||
"soilphysics" # depends on broken package rpanel-1.1-3
|
||||
@ -1146,20 +1195,24 @@ let
|
||||
"subspaceMOA" # depends on broken package animation-2.4
|
||||
"svglite" # depends on broken package gdtools-0.1.3
|
||||
"sybilSBML" # build is broken
|
||||
"SymTS" # build is broken
|
||||
"synthACS" # depends on broken package acs-2.0
|
||||
"tcpl" # depends on broken package RMySQL-0.10.9
|
||||
"TDA" # build is broken
|
||||
"TED" # depends on broken package animation-2.4
|
||||
"tesseract" # build is broken
|
||||
"texPreview" # depends on broken package magick-0.4
|
||||
"textreadr" # build is broken
|
||||
"textTinyR" # build is broken
|
||||
"TFBSTools" # depends on broken package CNEr-1.8.3
|
||||
"tilegramsR" # depends on broken package sf-0.4-1
|
||||
"TKF" # depends on broken package animation-2.4
|
||||
"tmap" # depends on broken package V8-1.2
|
||||
"tmaptools" # depends on broken package V8-1.2
|
||||
"tofsims" # build is broken
|
||||
"toxboot" # depends on broken package RMySQL-0.10.9
|
||||
"TransView" # build is broken
|
||||
"treatSens" # build is broken
|
||||
"treeplyr" # depends on broken package animation-2.4
|
||||
"TSMySQL" # depends on broken package RMySQL-0.10.9
|
||||
"uaparserjs" # depends on broken package V8-1.2
|
||||
@ -1168,12 +1221,14 @@ let
|
||||
"umx" # depends on broken package OpenMx-2.7.4
|
||||
"userfriendlyscience" # depends on broken package OpenMx-2.7.4
|
||||
"V8" # build is broken
|
||||
"VariantTools" # depends on broken package gmapR-1.16.0
|
||||
"VBmix" # build is broken
|
||||
"vcfR" # build is broken
|
||||
"vdiffr" # depends on broken package gdtools-0.1.3
|
||||
"vmsbase" # depends on broken package PBSmapping-2.69.76
|
||||
"wallace" # depends on broken package V8-1.2
|
||||
"wand" # build is broken
|
||||
"WebGestaltR" # depends on broken package PythonInR-0.1-3
|
||||
"webp" # build is broken
|
||||
"wordbankr" # depends on broken package RMySQL-0.10.9
|
||||
"x13binary" # build is broken
|
||||
|
||||
@ -6,6 +6,7 @@ stdenv.mkDerivation {
|
||||
buildCommand = "exit 1";
|
||||
|
||||
buildInputs = [ wget ];
|
||||
|
||||
nativeBuildInputs = [
|
||||
(rWrapper.override {
|
||||
packages = with rPackages; [
|
||||
|
||||
Loading…
Reference in New Issue
Block a user