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R: update CRAN and BIOC package sets

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This commit is contained in:
Peter Simons 2017-04-21 19:59:50 +02:00
parent d16c38a260
commit 430cbcfd2b
3 changed files with 2615 additions and 2274 deletions
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2504
pkgs/development/r-modules/bioc-packages.nix
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2372
pkgs/development/r-modules/cran-packages.nix
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13
pkgs/development/r-modules/default.nix
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@ -409,7 +409,6 @@ let
Cairo = [ pkgs.pkgconfig ];
Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ];
qtutils = [ pkgs.qt4 ];
ecoretriever = [ pkgs.which ];
tcltk2 = [ pkgs.tcl pkgs.tk ];
tikzDevice = [ pkgs.which pkgs.texlive.combined.scheme-medium ];
rPython = [ pkgs.which ];
@ -630,7 +629,6 @@ let
"rioja"
"ripa"
"rite"
"rnbn"
"RNCEP"
"RQDA"
"RSDA"
@ -662,7 +660,6 @@ let
"SYNCSA"
"SyNet"
"tcltk2"
"TDMR"
"TED"
"TestScorer"
"TIMP"
@ -695,7 +692,6 @@ let
# Packages which cannot be installed due to lack of dependencies or other reasons.
brokenPackages = [
"acs" # build is broken
"AffyTiling" # build is broken
"agRee" # depends on broken package BRugs-0.8-6
"aLFQ" # depends on broken package bio3d-2.3-1
"animation" # build is broken
@ -762,7 +758,6 @@ let
"csaw" # build is broken
"ctsem" # depends on broken package OpenMx-2.7.4
"cudaBayesreg" # build is broken
"curlconverter" # depends on broken package V8-1.2
"cytofkit" # depends on broken package flowCore-1.38.2
"daff" # depends on broken package V8-1.2
"dagbag" # build is broken
@ -787,7 +782,6 @@ let
"DirichletMultinomial" # build is broken
"diveRsity" # build is broken
"DmelSGI" # depends on broken package r-rhdf5-2.16.0
"DNAprofiles" # build is broken
"docxtools" # build is broken
"DOQTL" # depends on broken package r-rhdf5-2.16.0
"DOT" # depends on broken package V8-1.2
@ -862,7 +856,6 @@ let
"gMCP" # build is broken
"gmDatabase" # depends on broken package RMySQL-0.10.9
"gmum_r" # build is broken
"goldi" # build is broken
"googleformr" # build is broken
"gpg" # build is broken
"gpuR" # build is broken
@ -889,7 +882,6 @@ let
"IHWpaper" # depends on broken package r-lpsymphony-1.0.2
"IlluminaHumanMethylation450k_db" # build is broken
"immunoClust" # depends on broken package r-flowCore-1.38.2
"inSilicoMerging" # build is broken
"intansv" # build is broken
"interactiveDisplay" # build is broken
"ionicons" # depends on broken package rsvg-1.0
@ -941,7 +933,6 @@ let
"miscF" # depends on broken package BRugs-0.8-6
"mixlink" # build is broken
"MLSeq" # build is broken
"MMDiff" # depends on broken package r-DiffBind-2.0.9
"mmnet" # build is broken
"MonetDBLite" # build is broken
"mongolite" # build is broken
@ -1043,7 +1034,6 @@ let
"RapidPolygonLookup" # depends on broken package PBSmapping-2.69.76
"RAppArmor" # build is broken
"raptr" # depends on broken package PBSmapping-2.69.76
"RBerkeley" # build is broken
"RbioRXN" # depends on broken package ChemmineR-2.24.2
"Rblpapi" # build is broken
"Rchemcpp" # depends on broken package ChemmineR-2.24.2
@ -1094,7 +1084,6 @@ let
"rnetcarto" # build is broken
"ROI_plugin_cplex" # depends on broken package Rcplex-0.3-3
"ROI_plugin_symphony" # depends on broken package Rsymphony-0.1-26
"Rolexa" # build is broken
"ROracle" # build is broken
"RPA" # depends on broken package r-rhdf5-2.16.0
"RPANDA" # depends on broken package animation-2.4
@ -1119,7 +1108,6 @@ let
"RVideoPoker" # depends on broken package rpanel-1.1-3
"rzmq" # build is broken
"s2" # build is broken
"Sabermetrics" # build is broken
"sapFinder" # build is broken
"sbrl" # build is broken
"scater" # depends on broken package r-rhdf5-2.16.0
@ -1145,7 +1133,6 @@ let
"sodium" # build is broken
"soilphysics" # depends on broken package rpanel-1.1-3
"sortinghat" # build is broken
"spade" # depends on broken package r-flowCore-1.38.2
"spdynmod" # depends on broken package animation-2.4
"spocc" # depends on broken package V8-1.2
"spongecake" # build is broken