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samblaster: init 0.1.24

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This commit is contained in:
Justin Bedo 2019-12-17 14:26:28 +11:00
parent 6eeb612a9b
commit 2ada3b5d3e
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2 changed files with 28 additions and 0 deletions
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26
pkgs/applications/science/biology/samblaster/default.nix Normal file
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@ -0,0 +1,26 @@
{ stdenv, fetchFromGitHub }:
stdenv.mkDerivation rec {
pname = "samblaster";
version = "0.1.24";
src = fetchFromGitHub {
owner = "GregoryFaust";
repo = "samblaster";
rev = "v.${version}";
sha256 = "0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7";
};
installPhase = ''
mkdir -p $out/bin
cp samblaster $out/bin
'';
meta = with stdenv.lib; {
description = "Tool for marking duplicates and extracting discordant/split reads from SAM/BAM files";
maintainers = with maintainers; [ jbedo ];
license = licenses.mit;
homepage = "https://github.com/GregoryFaust/samblaster";
platforms = platforms.x86_64;
};
}

2
pkgs/top-level/all-packages.nix
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@ -24919,6 +24919,8 @@ in
mpi = true; mpi = true;
}); });
samblaster = callPackage ../applications/science/biology/samblaster { };
samtools = callPackage ../applications/science/biology/samtools { }; samtools = callPackage ../applications/science/biology/samtools { };
samtools_0_1_19 = callPackage ../applications/science/biology/samtools/samtools_0_1_19.nix { samtools_0_1_19 = callPackage ../applications/science/biology/samtools/samtools_0_1_19.nix {
stdenv = gccStdenv; stdenv = gccStdenv;