From 2ada3b5d3e4d776fc1e5dcdc1c34a4b7bd884614 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 17 Dec 2019 14:26:28 +1100
Subject: [PATCH] samblaster: init 0.1.24

---
 .../science/biology/samblaster/default.nix    | 26 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 28 insertions(+)
 create mode 100644 pkgs/applications/science/biology/samblaster/default.nix

diff --git a/pkgs/applications/science/biology/samblaster/default.nix b/pkgs/applications/science/biology/samblaster/default.nix
new file mode 100644
index 000000000000..7795ba237367
--- /dev/null
+++ b/pkgs/applications/science/biology/samblaster/default.nix
@@ -0,0 +1,26 @@
+{ stdenv, fetchFromGitHub }:
+
+stdenv.mkDerivation rec {
+  pname = "samblaster";
+  version = "0.1.24";
+
+  src = fetchFromGitHub {
+    owner = "GregoryFaust";
+    repo = "samblaster";
+    rev = "v.${version}";
+    sha256 = "0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7";
+  };
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp samblaster $out/bin
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Tool for marking duplicates and extracting discordant/split reads from SAM/BAM files";
+    maintainers = with maintainers; [ jbedo ];
+    license = licenses.mit;
+    homepage = "https://github.com/GregoryFaust/samblaster";
+    platforms = platforms.x86_64;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f635f7a81eb1..f2225ac24303 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -24919,6 +24919,8 @@ in
     mpi = true;
   });
 
+  samblaster = callPackage ../applications/science/biology/samblaster { };
+
   samtools = callPackage ../applications/science/biology/samtools { };
   samtools_0_1_19 = callPackage ../applications/science/biology/samtools/samtools_0_1_19.nix {
     stdenv = gccStdenv;