storj/cmd/metabase-orphaned-segments/main.go
Michał Niewrzał f73fcee892 cmd: add tool for orphaned segments
This tool has two commands to execute. One is to 'report'
orphaned segments. Second to 'delete' orphaned
segments.

To find such segments tool is first finding all unique
segment stream ids. As a next step its removing from this
list stream ids of existing objects. What is left is a list of
orphaned segments.

Change-Id: I4a0ae3ad0b10a8d16572bfd22ac92cfa15ca19b3
2021-07-21 10:10:58 +00:00

232 lines
5.4 KiB
Go

// Copyright (C) 2021 Storj Labs, Inc.
// See LICENSE for copying information.
package main
import (
"context"
"errors"
"github.com/jackc/pgx/v4"
"github.com/spacemonkeygo/monkit/v3"
"github.com/spf13/cobra"
flag "github.com/spf13/pflag"
"github.com/zeebo/errs"
"go.uber.org/zap"
"storj.io/common/uuid"
"storj.io/private/dbutil/pgutil"
"storj.io/private/process"
"storj.io/storj/satellite/metabase"
)
var mon = monkit.Package()
var (
rootCmd = &cobra.Command{
Use: "metainfo-orphaned-segments",
Short: "metainfo-orphaned-segments",
}
reportCmd = &cobra.Command{
Use: "report",
Short: "report metainfo-orphaned-segments",
RunE: reportCommand,
}
deleteCmd = &cobra.Command{
Use: "delete",
Short: "delete metainfo-orphaned-segments",
RunE: deleteCommand,
}
config Config
)
func init() {
rootCmd.AddCommand(reportCmd)
rootCmd.AddCommand(deleteCmd)
config.BindFlags(reportCmd.Flags())
}
// Config defines configuration for cleanup.
type Config struct {
MetabaseDB string
LoopBatchSize int
DeleteBatchSize int
Cockroach bool
}
// BindFlags adds bench flags to the the flagset.
func (config *Config) BindFlags(flag *flag.FlagSet) {
flag.StringVar(&config.MetabaseDB, "metabasedb", "", "connection URL for MetabaseDB")
flag.IntVar(&config.LoopBatchSize, "loop-batch-size", 10000, "number of objects to process at once")
flag.IntVar(&config.DeleteBatchSize, "delete-batch-size", 100, "number of entries to delete with single query")
flag.BoolVar(&config.Cockroach, "cockroach", true, "metabase is on CRDB")
}
// VerifyFlags verifies whether the values provided are valid.
func (config *Config) VerifyFlags() error {
var errlist errs.Group
if config.MetabaseDB == "" {
errlist.Add(errors.New("flag '--metabasedb' is not set"))
}
return errlist.Err()
}
func reportCommand(cmd *cobra.Command, args []string) error {
if err := config.VerifyFlags(); err != nil {
return err
}
ctx, _ := process.Ctx(cmd)
log := zap.L()
return Report(ctx, log, config)
}
func deleteCommand(cmd *cobra.Command, args []string) error {
if err := config.VerifyFlags(); err != nil {
return err
}
ctx, _ := process.Ctx(cmd)
log := zap.L()
return Delete(ctx, log, config)
}
func main() {
process.Exec(rootCmd)
}
// Report finds and reports orphaned segments, nothing is deleted.
func Report(ctx context.Context, log *zap.Logger, config Config) (err error) {
defer mon.Task()(&ctx)(&err)
ids, err := findOrphanedSegments(ctx, log, config)
if err != nil {
return err
}
log.Info("orphaned segments", zap.Int("count", len(ids)))
for _, id := range ids {
log.Info("segment", zap.String("id", id.String()))
}
return nil
}
// Delete finds and deletes orphaned segments.
func Delete(ctx context.Context, log *zap.Logger, config Config) (err error) {
defer mon.Task()(&ctx)(&err)
ids, err := findOrphanedSegments(ctx, log, config)
if err != nil {
return err
}
rawMetabaseDB, err := pgx.Connect(ctx, config.MetabaseDB)
if err != nil {
return errs.New("unable to connect %q: %w", config.MetabaseDB, err)
}
defer func() { err = errs.Combine(err, rawMetabaseDB.Close(ctx)) }()
log.Info("orphaned segments", zap.Int("count", len(ids)))
log.Info("starting deletion")
for len(ids) > 0 {
batch := config.DeleteBatchSize
if batch > len(ids) {
batch = len(ids)
}
err = sendDelete(ctx, rawMetabaseDB, ids[:batch])
if err != nil {
return err
}
ids = ids[batch:]
log.Info("deleted", zap.Int("count", batch))
}
return nil
}
func findOrphanedSegments(ctx context.Context, log *zap.Logger, config Config) (_ []uuid.UUID, err error) {
defer mon.Task()(&ctx)(&err)
metabaseDB, err := metabase.Open(ctx, log.Named("metabase"), config.MetabaseDB)
if err != nil {
return nil, errs.New("unable to connect %q: %w", config.MetabaseDB, err)
}
defer func() { err = errs.Combine(err, metabaseDB.Close()) }()
startingTime, err := metabaseDB.Now(ctx)
if err != nil {
return nil, err
}
streamIDs := make(map[uuid.UUID]struct{})
numberOfElements := 0
err = metabaseDB.IterateLoopSegments(ctx, metabase.IterateLoopSegments{
BatchSize: config.LoopBatchSize,
AsOfSystemTime: startingTime,
}, func(ctx context.Context, it metabase.LoopSegmentsIterator) error {
var entry metabase.LoopSegmentEntry
for it.Next(ctx, &entry) {
streamIDs[entry.StreamID] = struct{}{}
if numberOfElements%100000 == 0 {
log.Info("segments iterated", zap.Int("segments", numberOfElements))
}
numberOfElements++
}
return nil
})
if err != nil {
return nil, err
}
numberOfElements = 0
err = metabaseDB.IterateLoopObjects(ctx, metabase.IterateLoopObjects{
BatchSize: config.LoopBatchSize,
AsOfSystemTime: startingTime,
}, func(ctx context.Context, it metabase.LoopObjectsIterator) error {
var entry metabase.LoopObjectEntry
for it.Next(ctx, &entry) {
delete(streamIDs, entry.StreamID)
if numberOfElements%100000 == 0 {
log.Info("objects iterated", zap.Int("objects", numberOfElements))
}
numberOfElements++
}
return nil
})
if err != nil {
return nil, err
}
ids := make([]uuid.UUID, 0, len(streamIDs))
for id := range streamIDs {
ids = append(ids, id)
}
return ids, nil
}
func sendDelete(ctx context.Context, conn *pgx.Conn, ids []uuid.UUID) (err error) {
defer mon.Task()(&ctx)(&err)
if len(ids) == 0 {
return nil
}
_, err = conn.Exec(ctx, "DELETE FROM segments WHERE stream_id = ANY($1)", pgutil.UUIDArray(ids))
if err != nil {
return err
}
return nil
}