39 lines
1.1 KiB
Nix
39 lines
1.1 KiB
Nix
{ stdenv, cmake, rocksdb, rapidjson, pkgconfig, fetchFromGitHub, fetchpatch, zlib }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "sortmerna";
|
|
version = "3.0.3";
|
|
|
|
src = fetchFromGitHub {
|
|
repo = pname;
|
|
owner = "biocore";
|
|
rev = "v${version}";
|
|
sha256 = "0zx5fbzyr8wdr0zwphp8hhcn1xz43s5lg2ag4py5sv0pv5l1jh76";
|
|
};
|
|
|
|
patches = [
|
|
(fetchpatch {
|
|
name = "CMakeInstallPrefix.patch";
|
|
url = "https://github.com/biocore/sortmerna/commit/4d36d620a3207e26cf3f588d4ec39889ea21eb79.patch";
|
|
sha256 = "0hc3jwdr6ylbyigg52q8islqc0mb1k8rrjadvjfqaxnili099apd";
|
|
})
|
|
];
|
|
|
|
nativeBuildInputs = [ cmake rapidjson pkgconfig ];
|
|
buildInputs = [ zlib rocksdb rapidjson ];
|
|
|
|
cmakeFlags = [
|
|
"-DCMAKE_BUILD_TYPE=Release"
|
|
"-DROCKSDB_HOME=${rocksdb}"
|
|
"-DRAPIDJSON_HOME=${rapidjson}"
|
|
];
|
|
|
|
meta = with stdenv.lib; {
|
|
description = "Tools for filtering, mapping, and OTU-picking from shotgun genomics data";
|
|
license = licenses.lgpl3;
|
|
platforms = platforms.x86_64;
|
|
homepage = "https://bioinfo.lifl.fr/RNA/sortmerna/";
|
|
maintainers = with maintainers; [ luispedro ];
|
|
};
|
|
}
|