29 lines
810 B
Nix
29 lines
810 B
Nix
{ stdenv, fetchFromGitHub, autoconf, cmake, hdf5, zlib }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "kallisto";
|
|
version = "0.46.0";
|
|
|
|
src = fetchFromGitHub {
|
|
repo = "kallisto";
|
|
owner = "pachterlab";
|
|
rev = "v${version}";
|
|
sha256 = "09vgdqwpigl4x3sdw5vjfyknsllkli339mh8xapbf7ldm0jldfn9";
|
|
};
|
|
|
|
nativeBuildInputs = [ autoconf cmake ];
|
|
|
|
buildInputs = [ hdf5 zlib ];
|
|
|
|
# Parallel build fails in some cases: https://github.com/pachterlab/kallisto/issues/160
|
|
enableParallelBuilding = false;
|
|
|
|
meta = with stdenv.lib; {
|
|
description = "Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data";
|
|
homepage = "https://pachterlab.github.io/kallisto";
|
|
license = licenses.bsd2;
|
|
platforms = platforms.linux;
|
|
maintainers = with maintainers; [ arcadio ];
|
|
};
|
|
}
|