4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
34 lines
986 B
Nix
34 lines
986 B
Nix
{lib, stdenv, fetchurl, jre, unzip, makeWrapper}:
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stdenv.mkDerivation rec {
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pname = "snpeff";
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version = "4.3t";
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src = fetchurl {
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url = "mirror://sourceforge/project/snpeff/snpEff_v${builtins.replaceStrings [ "." ] [ "_" ] version}_core.zip";
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sha256 = "0i12mv93bfv8xjwc3rs2x73d6hkvi7kgbbbx3ry984l3ly4p6nnm";
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};
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buildInputs = [ unzip jre makeWrapper ];
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sourceRoot = "snpEff";
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installPhase = ''
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mkdir -p $out/libexec/snpeff
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cp *.jar *.config $out/libexec/snpeff
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mkdir -p $out/bin
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makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
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makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
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'';
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meta = with lib; {
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description = "Genetic variant annotation and effect prediction toolbox";
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license = licenses.lgpl3;
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homepage = "http://snpeff.sourceforge.net/";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.all;
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};
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}
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