4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
42 lines
1.4 KiB
Nix
42 lines
1.4 KiB
Nix
{ lib, stdenv, fetchurl, cmake, zlib }:
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stdenv.mkDerivation {
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name = "diamond-0.8.36";
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src = fetchurl {
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url = "https://github.com/bbuchfink/diamond/archive/v0.8.36.tar.gz";
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sha256 = "092smzzjcg51n3x4h84k52ijpz9m40ri838j9k2i463ribc3c8rh";
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};
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patches = [
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./diamond-0.8.36-no-warning.patch
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];
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib ];
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meta = with lib; {
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description = "Accelerated BLAST compatible local sequence aligner";
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longDescription = ''
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A sequence aligner for protein and translated DNA
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searches and functions as a drop-in replacement for the NCBI BLAST
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software tools. It is suitable for protein-protein search as well as
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DNA-protein search on short reads and longer sequences including contigs
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and assemblies, providing a speedup of BLAST ranging up to x20,000.
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DIAMOND is developed by Benjamin Buchfink. Feel free to contact him for support (Email Twitter).
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If you use DIAMOND in published research, please cite
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B. Buchfink, Xie C., D. Huson,
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"Fast and sensitive protein alignment using DIAMOND",
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Nature Methods 12, 59-60 (2015).
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'';
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homepage = "https://github.com/bbuchfink/diamond";
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license = {
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fullName = "University of Tuebingen, Benjamin Buchfink";
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url = "https://raw.githubusercontent.com/bbuchfink/diamond/master/src/COPYING";
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};
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maintainers = [ maintainers.metabar ];
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};
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}
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