| .. |
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ants
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treewide: avoid use of lib.optional with list in inputs
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2021-10-04 13:02:42 -04:00 |
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aragorn
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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bayescan
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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bcftools
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bcftools: 1.11 -> 1.13
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2021-07-10 10:15:10 +00:00 |
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bedops
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bedops: 2.4.39 -> 2.4.40
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2021-07-23 01:02:40 +00:00 |
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bedtools
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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bftools
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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blast
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blast: 2.11.0 -> 2.12.0
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2021-09-15 15:33:44 +00:00 |
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bowtie
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bowtie: 1.3.0 -> 1.3.1
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2021-09-15 07:35:44 +00:00 |
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bowtie2
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Merge pull request #111691 from jbedo/bowtie2
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2021-08-07 04:03:47 +03:00 |
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bppsuite
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bwa
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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cd-hit
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perlPackages.ImageMagick: rename from perlPackages.PerlMagick
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2021-08-02 20:05:00 +03:00 |
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clustal-omega
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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cmtk
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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conglomerate
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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dcm2niix
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dcm2niix: 1.0.20201102 -> 1.0.20210317
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2021-05-02 11:10:40 +00:00 |
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deeptools
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deeptools: Fix tests
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2020-11-25 21:36:37 +01:00 |
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delly
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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diamond
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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ecopcr
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ecopcr: use spaces for indentation
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2021-01-20 10:53:10 +10:00 |
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eggnog-mapper
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treewide: makeWrapper buildInputs to nativeBuildInputs
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2021-02-19 20:09:16 +07:00 |
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emboss
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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est-sfs
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est-sfs: fix darwin build
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2021-05-15 12:10:05 +02:00 |
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exonerate
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treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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2021-01-19 01:16:25 -08:00 |
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EZminc
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treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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2021-01-19 01:16:25 -08:00 |
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fastp
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fastp: 0.20.1 -> 0.22.0
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2021-08-25 09:52:07 +10:00 |
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freebayes
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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hisat2
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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hmmer
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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igv
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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inormalize
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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itsx
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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iv
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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kallisto
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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kent
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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kssd
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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last
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last: 1178 -> 1179
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2021-02-21 21:24:17 +00:00 |
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lumpy
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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MACS2
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macs2: init at 2.2.7.1
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2021-04-14 10:17:53 -04:00 |
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macse
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treewide: convert phases that contain ":" to dont* = true (#130500)
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2021-07-18 23:42:48 +02:00 |
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manta
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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megahit
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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meme-suite
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meme-suite: init at 5.1.1 (#118603)
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2021-04-05 22:43:27 +02:00 |
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messer-slim
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messer-slim: 3.2.1 -> 3.6
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2021-03-04 18:40:37 +00:00 |
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migrate
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treewide: fix double quoted strings in meta.description
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2021-01-24 19:56:59 +07:00 |
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minc-tools
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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minc-widgets
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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minia
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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minimap2
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minimap2: 2.17 -> 2.22
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2021-08-14 15:55:35 +00:00 |
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mni_autoreg
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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mosdepth
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mosdepth: convert to buildNimPackage
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2021-09-05 11:20:02 +02:00 |
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mrbayes
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mrbayes: 3.2.7 -> 3.2.7a
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2021-07-27 14:30:23 +02:00 |
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mrtrix
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mrtrix: 3.0.0 -> 3.0.2
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2020-09-30 22:13:18 -04:00 |
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muscle
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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N3
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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ncbi-tools
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treewide: fix double quoted strings in meta.description
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2021-01-24 19:56:59 +07:00 |
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neuron
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treewide: ensure pre/post phase hooks are strings
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2021-08-20 19:08:42 -04:00 |
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niftyreg
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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niftyseg
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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obitools
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Merge pull request #136967 from bzizou/obitools
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2021-09-11 16:27:18 +02:00 |
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octopus
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octopus: 0.7.3 -> 0.7.4
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2021-05-11 08:46:00 +10:00 |
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paml
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treewide: fix double quoted strings in meta.description
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2021-01-24 19:56:59 +07:00 |
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picard-tools
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picard-tools: 2.26.0 -> 2.26.2
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2021-09-14 19:53:25 +00:00 |
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platypus
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treewide: makeWrapper buildInputs to nativeBuildInputs
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2021-02-19 20:09:16 +07:00 |
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plink-ng
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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poretools
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treewide: remove stdenv where not needed
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2021-01-25 18:31:47 +01:00 |
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prodigal
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treewide: add targetPrefix to hardcoded references to CC=cc
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2021-02-20 01:01:46 +07:00 |
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quast
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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raxml
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mpi: use mpi attribute consistently as the default MPI implementations
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2021-01-23 12:15:13 +01:00 |
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sambamba
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sambamba 0.8.0 -> 0.8.1
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2021-08-31 12:37:49 +03:00 |
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samblaster
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samblaster: fix darwin build
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2021-05-18 13:41:51 +02:00 |
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samtools
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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seaview
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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snpeff
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treewide: unzip buildInputs to nativeBuildInputs (#112302)
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2021-02-20 16:01:53 -05:00 |
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somatic-sniper
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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sortmerna
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sortmerna: mark broken on darwin
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2021-01-26 12:55:33 -05:00 |
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spades
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SPAdes: 3.15.2 -> 3.15.3
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2021-08-15 11:12:42 +03:00 |
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stacks
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Merge pull request #135516 from bzizou/stacks
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2021-08-26 03:50:48 +02:00 |
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star
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star: 2.7.8a -> 2.7.9a
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2021-09-24 10:37:28 +08:00 |
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strelka
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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sumatools
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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svaba
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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tebreak
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treewide: remove stdenv where not needed
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2021-01-25 18:31:47 +01:00 |
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trimal
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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truvari
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truvari: 2.0.2 -> 2.1.1 (#126839)
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2021-06-15 22:14:20 +02:00 |
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varscan
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varscan: deprecate phases
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2021-08-03 00:04:16 +02:00 |
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vcftools
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treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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2021-01-19 01:16:25 -08:00 |
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whisper
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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xenomapper
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