| .. |
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ants
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treewide: avoid use of lib.optional with list in inputs
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2021-10-04 13:02:42 -04:00 |
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aragorn
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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bayescan
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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bcftools
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bcftools: 1.13 -> 1.14
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2021-10-29 02:49:14 +00:00 |
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bedops
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bedops: 2.4.39 -> 2.4.40
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2021-07-23 01:02:40 +00:00 |
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bedtools
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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bftools
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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blast
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blast: 2.11.0 -> 2.12.0
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2021-09-15 15:33:44 +00:00 |
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bowtie
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bowtie: 1.3.0 -> 1.3.1
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2021-09-15 07:35:44 +00:00 |
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bowtie2
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bowtie2: 2.4.4 -> 2.4.5
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2022-01-23 22:45:59 +00:00 |
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bppsuite
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bwa
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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cd-hit
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perlPackages.ImageMagick: rename from perlPackages.PerlMagick
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2021-08-02 20:05:00 +03:00 |
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clustal-omega
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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cmtk
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pkgs/applications: rename name to pname&version part 2
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2021-11-07 14:53:06 +01:00 |
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conglomerate
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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dcm2niix
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dcm2niix: 1.0.20210317 -> 1.0.20211006
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2021-10-29 09:34:20 +00:00 |
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deeptools
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deeptools: 3.5.0 -> 3.5.1
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2022-01-21 05:36:24 +00:00 |
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delly
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delly: 0.8.7 -> 0.9.1
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2021-11-25 21:19:48 +11:00 |
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diamond
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diamond: switch to fetchFromGitHub
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2021-12-23 19:11:17 +01:00 |
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ecopcr
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pkgs/applications: rename name to pname&version part 2
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2021-11-07 14:53:06 +01:00 |
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eggnog-mapper
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treewide: makeWrapper buildInputs to nativeBuildInputs
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2021-02-19 20:09:16 +07:00 |
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emboss
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pkgs/applications: rename name to pname&version part 2
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2021-11-07 14:53:06 +01:00 |
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est-sfs
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est-sfs: fix darwin build
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2021-05-15 12:10:05 +02:00 |
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exonerate
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treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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2021-01-19 01:16:25 -08:00 |
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EZminc
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treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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2021-01-19 01:16:25 -08:00 |
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fastp
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fastp: 0.23.1 -> 0.23.2
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2021-12-02 08:03:17 +11:00 |
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freebayes
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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genmap
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genmap: init 1.3.0
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2021-12-04 06:51:16 +11:00 |
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hisat2
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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hmmer
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hmmer: restrict platforms to x86_64
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2021-11-20 19:17:57 +00:00 |
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igv
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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inormalize
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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itsx
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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iv
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pkgs/applications: rename name to pname&version part 2
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2021-11-07 14:53:06 +01:00 |
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kallisto
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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kent
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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kssd
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kssd: switch to fetchFromGitHub
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2021-12-23 19:11:17 +01:00 |
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last
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last: 1179 -> 1256
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2021-10-19 13:23:14 +11:00 |
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MACS2
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macs2: init at 2.2.7.1
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2021-04-14 10:17:53 -04:00 |
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macse
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treewide: convert phases that contain ":" to dont* = true (#130500)
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2021-07-18 23:42:48 +02:00 |
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manta
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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megahit
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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meme-suite
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meme-suite: init at 5.1.1 (#118603)
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2021-04-05 22:43:27 +02:00 |
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messer-slim
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messer-slim: 3.6 -> 3.7
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2021-12-30 20:32:56 +00:00 |
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migrate
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treewide: fix double quoted strings in meta.description
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2021-01-24 19:56:59 +07:00 |
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minc-tools
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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minc-widgets
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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minia
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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minimap2
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minimap2: 2.23 -> 2.24
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2022-01-17 08:49:35 +01:00 |
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mni_autoreg
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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mosdepth
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mosdepth: convert to buildNimPackage
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2021-09-05 11:20:02 +02:00 |
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mrbayes
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mrbayes: 3.2.7 -> 3.2.7a
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2021-07-27 14:30:23 +02:00 |
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mrtrix
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mrtrix: 3.0.2 -> unstable-2021-11-25
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2021-11-30 21:03:53 -08:00 |
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muscle
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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N3
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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ncbi-tools
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treewide: fix double quoted strings in meta.description
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2021-01-24 19:56:59 +07:00 |
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neuron
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treewide: ensure pre/post phase hooks are strings
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2021-08-20 19:08:42 -04:00 |
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niftyreg
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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niftyseg
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niftyseg: switch to fetchFromGitHub
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2021-12-23 19:11:17 +01:00 |
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obitools
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obitools3: removed useless python restriction
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2021-11-08 07:51:48 +01:00 |
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octopus
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octopus: 0.7.3 -> 0.7.4
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2021-05-11 08:46:00 +10:00 |
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paml
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treewide: fix double quoted strings in meta.description
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2021-01-24 19:56:59 +07:00 |
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picard-tools
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picard-tools: 2.26.6 -> 2.26.9
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2021-12-22 22:20:36 +11:00 |
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platypus
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treewide: makeWrapper buildInputs to nativeBuildInputs
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2021-02-19 20:09:16 +07:00 |
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plink-ng
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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poretools
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python,pythonPackages: make aliases
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2022-01-16 18:39:59 +00:00 |
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prodigal
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treewide: add targetPrefix to hardcoded references to CC=cc
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2021-02-20 01:01:46 +07:00 |
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quast
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treewide: stdenv.lib -> lib
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2021-01-16 17:58:11 +07:00 |
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raxml
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mpi: use mpi attribute consistently as the default MPI implementations
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2021-01-23 12:15:13 +01:00 |
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sambamba
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sambamba: 0.8.1 -> 0.8.2 (#155972)
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2022-01-23 04:51:46 +01:00 |
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samblaster
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samblaster: fix darwin build
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2021-05-18 13:41:51 +02:00 |
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samtools
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samtools: pull upstream fix for ncurses-6.3
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2021-11-26 13:02:05 +00:00 |
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seaview
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seaview: 5.0.4 -> 5.0.5
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2021-12-12 15:59:16 +00:00 |
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snpeff
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treewide: unzip buildInputs to nativeBuildInputs (#112302)
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2021-02-20 16:01:53 -05:00 |
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somatic-sniper
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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sortmerna
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sortmerna: mark broken on darwin
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2021-01-26 12:55:33 -05:00 |
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spades
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SPAdes: 3.15.2 -> 3.15.3
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2021-08-15 11:12:42 +03:00 |
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stacks
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stacks: 2.59 -> 2.60
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2022-01-02 19:23:58 +01:00 |
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star
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star: 2.7.9a -> 2.7.10a
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2022-01-24 19:51:44 +01:00 |
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strelka
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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subread
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subread: init 2.0.3
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2021-12-14 13:30:23 +11:00 |
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sumatools
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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svaba
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lzma: deprecate alias
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2021-04-04 19:49:52 +02:00 |
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tebreak
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tebreak: also use python3 for tests
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2022-01-16 18:00:59 +00:00 |
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trimal
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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truvari
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truvari: 2.0.2 -> 2.1.1 (#126839)
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2021-06-15 22:14:20 +02:00 |
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varscan
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varscan: deprecate phases
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2021-08-03 00:04:16 +02:00 |
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vcftools
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treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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2021-01-19 01:16:25 -08:00 |
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whisper
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treewide: with stdenv.lib; in meta -> with lib;
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2021-01-11 10:38:22 +01:00 |
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xenomapper
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python3Packages.xenomapper: move to top-level
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2022-01-01 02:09:11 +01:00 |
