39 lines
1001 B
Nix
39 lines
1001 B
Nix
{stdenv, fetchFromGitHub, python27, htslib, zlib, makeWrapper}:
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let python = python27.withPackages (ps: with ps; [ cython ]);
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in stdenv.mkDerivation {
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pname = "platypus-unstable";
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version = "2018-07-22";
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src = fetchFromGitHub {
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owner = "andyrimmer";
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repo = "Platypus";
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rev = "3e72641c69800da0cd4906b090298e654d316ee1";
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sha256 = "0nah6r54b8xm778gqyb8b7rsd76z8ji4g73sm6rvpw5s96iib1vw";
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};
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buildInputs = [ htslib python zlib makeWrapper ];
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buildPhase = ''
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patchShebangs .
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make
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'';
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installPhase = ''
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mkdir -p $out/libexec/platypus
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cp -r ./* $out/libexec/platypus
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mkdir -p $out/bin
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makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py"
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'';
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meta = with stdenv.lib; {
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description = "The Platypus variant caller";
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license = licenses.gpl3;
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homepage = "https://github.com/andyrimmer/Platypus";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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