4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
43 lines
851 B
Nix
43 lines
851 B
Nix
{ lib, stdenv
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, buildPythonPackage
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, pythonOlder
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, fetchPypi
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, bwa
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, cffi
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, zlib
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}:
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buildPythonPackage rec {
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pname = "bwapy";
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version = "0.1.4";
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disabled = pythonOlder "3.6";
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src = fetchPypi {
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inherit pname version;
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sha256 = "090qwx3vl729zn3a7sksbviyg04kc71gpbm3nd8dalqp673x1npw";
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};
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postPatch = ''
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# replace bundled bwa
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rm -r bwa/*
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cp ${bwa}/lib/*.a ${bwa}/include/*.h bwa/
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substituteInPlace setup.py \
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--replace 'setuptools>=49.2.0' 'setuptools'
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'';
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buildInputs = [ zlib bwa ];
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propagatedBuildInputs = [ cffi ];
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# no tests
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doCheck = false;
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pythonImportsCheck = [ "bwapy" ];
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meta = with lib; {
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homepage = "https://github.com/ACEnglish/acebinf";
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description = "Python bindings to bwa mem aligner";
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license = licenses.mpl20;
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maintainers = with maintainers; [ ris ];
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};
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}
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