4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
41 lines
1.3 KiB
Nix
41 lines
1.3 KiB
Nix
{ lib, stdenv, fetchFromGitHub, fetchpatch, makeWrapper, python27Packages, wget, diamond, hmmer }:
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python27Packages.buildPythonApplication rec {
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pname = "eggnog-mapper";
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version = "1.0.3";
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src = fetchFromGitHub {
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owner = "eggnogdb";
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repo = "eggnog-mapper";
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rev = version;
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sha256 = "1aaaflppy84bhkh2hb5gnzm4xgrz0rz0cgfpadr9w8cva8p0sqdv";
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};
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patches = (fetchpatch {
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url = "https://github.com/eggnogdb/eggnog-mapper/commit/6972f601ade85b65090efca747d2302acb58507f.patch";
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sha256 = "0abnmn0bh11jihf5d3cggiild1ykawzv5f5fhb4cyyi8fvy4hcxf";
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});
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buildInputs = [ makeWrapper ];
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propagatedBuildInputs = [ python27Packages.biopython wget diamond hmmer ];
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# make emapper find diamond & hmmer
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makeWrapperArgs = [
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''--prefix PATH ':' "${diamond}/bin"''
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''--prefix PATH ':' "${hmmer}/bin"''
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];
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# Tests rely on some of the databases being available, which is not bundled
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# with this package as (1) in total, they represent >100GB of data, and (2)
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# the user can download only those that interest them.
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doCheck = false;
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meta = with lib; {
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description = "Fast genome-wide functional annotation through orthology assignment";
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license = licenses.gpl2;
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homepage = "https://github.com/eggnogdb/eggnog-mapper/wiki";
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maintainers = with maintainers; [ luispedro ];
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platforms = platforms.all;
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};
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}
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