nixpkgs/pkgs/applications/science/biology/sambamba/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

32 lines
809 B
Nix

{ lib, stdenv, fetchFromGitHub, python3, which, dmd, ldc, zlib }:
stdenv.mkDerivation rec {
pname = "sambamba";
version = "0.7.1";
src = fetchFromGitHub {
owner = "biod";
repo = "sambamba";
rev = "v${version}";
sha256 = "0k5wy06zrbsc40x6answgz7rz2phadyqwlhi9nqxbfqanbg9kq20";
fetchSubmodules = true;
};
nativeBuildInputs = [ which python3 dmd ldc ];
buildInputs = [ zlib ];
# Upstream's install target is broken; copy manually
installPhase = ''
mkdir -p $out/bin
cp bin/sambamba-${version} $out/bin/sambamba
'';
meta = with lib; {
description = "SAM/BAM processing tool";
homepage = "https://lomereiter.github.io/sambamba/";
maintainers = with maintainers; [ jbedo ];
license = with licenses; gpl2;
platforms = platforms.x86_64;
};
}