1114 lines
200 KiB
Nix
1114 lines
200 KiB
Nix
# This file is generated from generate-r-packages.R. DO NOT EDIT.
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# Execute the following command to update the file.
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#
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# Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix
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{ self, derive }:
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let derive2 = derive { rVersion = "3.2"; };
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in with self; {
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ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.0.0"; sha256="0mxw5s4cfh9dhlwm485n3x7wf81hww1353ilz1zy1wvjx0dacb99"; depends=[ABAData gplots Rcpp]; };
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ABSSeq = derive2 { name="ABSSeq"; version="1.6.1"; sha256="0cqscx7mxady04k3f4s24rbx961sj95i2wwysxkcc0a9my25sqfg"; depends=[limma locfit]; };
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ABarray = derive2 { name="ABarray"; version="1.38.0"; sha256="15zdfwpi3hgadydxlsksr7gh7wg577qcwp47zm8mxh28mcl9l048"; depends=[Biobase multtest]; };
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ACME = derive2 { name="ACME"; version="2.26.0"; sha256="020cfccwkpk5w8xpg3xn2pcrksda67r4yg6im2qlljqrmaijjb9k"; depends=[Biobase BiocGenerics]; };
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ADaCGH2 = derive2 { name="ADaCGH2"; version="2.10.0"; sha256="11hhmap9f8iqcxf4n4didb6isswjqdwwdc1yfm2056mcgny16r91"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; };
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AGDEX = derive2 { name="AGDEX"; version="1.18.0"; sha256="0hy5kl6j8hx10a03x44lqij0j7bkg4rx5lf5aicx0mrd1g59b6w1"; depends=[Biobase GSEABase]; };
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AIMS = derive2 { name="AIMS"; version="1.2.0"; sha256="14xpa2590rkqbmq8kfm356syas117342pn1wah67mb9r45klipb9"; depends=[Biobase e1071]; };
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ALDEx2 = derive2 { name="ALDEx2"; version="1.2.0"; sha256="0p59g70472b11ab1ggzxb7l6rg5sxmb8nk47b5z4qb1lf0a0x576"; depends=[GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
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ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.10.0"; sha256="11qhbvgyimfnclmn7jyl9rsvkphh854a28d29rr6fc6gvmns7y40"; depends=[ARRmData]; };
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ASEB = derive2 { name="ASEB"; version="1.14.0"; sha256="1wr7n250gv1xmnkp5xvbvc3ccwm3ffdj63bj5ifarphb4xs16kf6"; depends=[]; };
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ASGSCA = derive2 { name="ASGSCA"; version="1.4.0"; sha256="1xp7g1vhvk4m3z88pnnchjxk03q5vadrvzrb1p5rys6svfk4z9vp"; depends=[MASS Matrix]; };
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ASSET = derive2 { name="ASSET"; version="1.8.0"; sha256="17pswg3babj454rr6hcnk8k3bgm9rcw2zn8yvvd1jx79bairz47p"; depends=[MASS msm rmeta]; };
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ASSIGN = derive2 { name="ASSIGN"; version="1.6.0"; sha256="1kmm72vlxlx8nk6xd1akm9bmkmqmmazxgixjjarwp2r8drhv8447"; depends=[gplots msm Rlab]; };
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AffyCompatible = derive2 { name="AffyCompatible"; version="1.30.0"; sha256="1qw741j4d9b7bczjz3s72a9d0dcxbh5a2raak3ggwmz72p53axfz"; depends=[Biostrings RCurl XML]; };
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AffyExpress = derive2 { name="AffyExpress"; version="1.36.0"; sha256="186gc8c3bj070zvwyy4vz44wx1r85bbmil78b6m9kvwp6q1856d7"; depends=[affy limma]; };
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AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.16.0"; sha256="122v40vq7pzl1qlycv8rvsq3r9ialkvsa8qm5drybf5f4nlk6wm8"; depends=[affy]; };
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AffyTiling = derive2 { name="AffyTiling"; version="1.28.0"; sha256="08n1w64yk1pxb9d8dpa86y3mqxrsvyq0gsfzlsqg6fz8jz497fhr"; depends=[affxparser affy preprocessCore]; };
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AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.20.0"; sha256="1pb0491rgcjfnnv4xmf73bdawiggi4872w238qlf96i9a9r0gik2"; depends=[affy affycoretools Biobase limma preprocessCore]; };
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AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.8.1"; sha256="1410sr3xfjwz7szl9w17h9n03im3wd9w1q25cnlyg4ipmp2xc89h"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
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AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.4.1"; sha256="0zq0h9abswvhkpgb6f966rhgj7lh02aykq88fphxfv9zzkjfxbjp"; depends=[Biobase graph log4r rjson]; };
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AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.32.3"; sha256="1v6x62hgys5827yg2xayjrd9xawbayzm6wy0q4vxh1s6yxc9bklj"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
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AnnotationForge = derive2 { name="AnnotationForge"; version="1.12.2"; sha256="0dybwq4v6f99w5v2hg519wc3y01i1hq1jd250dkj9976y8lhx0b8"; depends=[AnnotationDbi Biobase BiocGenerics DBI org_Hs_eg_db RSQLite S4Vectors]; };
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AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.20.0"; sha256="03rznpbsgq3pdh0id35vp8984f57ws2jpb0cww1qxglf967gy028"; depends=[AnnotationDbi]; };
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AnnotationHub = derive2 { name="AnnotationHub"; version="2.2.5"; sha256="11vyppg8zgfdd6s7457991l7j6l7jd4p2ah1m89bg226pakfi552"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
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AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.0.2"; sha256="1d2xisxzn0cic5p5412zks5chr16g9xj159kxpkkqk1wvif6im33"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery httr IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML xml2]; };
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ArrayExpress = derive2 { name="ArrayExpress"; version="1.30.1"; sha256="09z680q1l8fp2y389n6ik8mjymqn688j333c5fgdpmdqg1z5acx4"; depends=[Biobase limma oligo XML]; };
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ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.20.0"; sha256="00a5h3nwwhi9phrys2gj0ba8a24iqxk09licb0jn1qzdz9mrfxmq"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
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ArrayTV = derive2 { name="ArrayTV"; version="1.8.0"; sha256="0ny5x2w0n3di5wzywfngsfdxaciczs24cnbvk75mv6hf4bdwfp74"; depends=[DNAcopy foreach oligoClasses]; };
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ArrayTools = derive2 { name="ArrayTools"; version="1.30.0"; sha256="168llqk8w1b54xy0ijg0m8mzcwggawkdr4s7abi2fv4q5007s1jv"; depends=[affy Biobase limma xtable]; };
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AtlasRDF = derive2 { name="AtlasRDF"; version="1.6.0"; sha256="16hgw47px7ig6hrm90y5nzy3dgdfm5my58bli20aj6dhnh2yvhxd"; depends=[hash SPARQL]; };
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BAC = derive2 { name="BAC"; version="1.30.0"; sha256="1yrw01m8fd54v352pcb7904f8wi3il83nx8ywf6m968x33y2npxn"; depends=[]; };
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BADER = derive2 { name="BADER"; version="1.8.0"; sha256="0zw02zrxl9587qkfy6ayhqx66rqk9i80g9zgcywa69npr439qrmh"; depends=[]; };
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BAGS = derive2 { name="BAGS"; version="2.10.0"; sha256="00absrj8rlwcfa4pv3fhmb0561b2rxmr8c7lqq8jc5sncw8bay51"; depends=[Biobase breastCancerVDX]; };
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BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.0.0"; sha256="12r0pn3nn6q725qrrwzmmzg6x58kqr89s3b536ld11jp4081yb6c"; depends=[Rsamtools VariantAnnotation]; };
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BCRANK = derive2 { name="BCRANK"; version="1.32.0"; sha256="14akhngl88ywirpax984vwmzg5rp57034g2kdy0sz5x283mcmav6"; depends=[Biostrings]; };
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BEAT = derive2 { name="BEAT"; version="1.8.0"; sha256="1amk6812hy56j22mdmjxjpiak60cv59plz9j7gar3nr9g6yl3c7p"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; };
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BEclear = derive2 { name="BEclear"; version="1.2.0"; sha256="1s96gdgf54ijbsy29a4ac3y1z3d8y4iyv669mjiyx2qnnylb2gm9"; depends=[Matrix snowfall]; };
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BGmix = derive2 { name="BGmix"; version="1.30.0"; sha256="1ii0cvqpz7ai779r4hx8yimsx69ln1f7qlw7jvp3k606z52kqkp2"; depends=[KernSmooth]; };
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BHC = derive2 { name="BHC"; version="1.22.0"; sha256="0m8w4b3ihnmvccy32nwvgzwn7k9i018ydw8iz19b6kz5r5c89q17"; depends=[]; };
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BRAIN = derive2 { name="BRAIN"; version="1.16.0"; sha256="09f82dppd9zb3qf5y507yrnv1xsp4cgbwiz068ib0qjfaygmvb02"; depends=[Biostrings lattice PolynomF]; };
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BSgenome = derive2 { name="BSgenome"; version="1.38.0"; sha256="130w0m6q8kkca7gyz1aqj5jjhalwvwi6rk2yvbjrnj4gpnncyrd2"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
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BUS = derive2 { name="BUS"; version="1.26.0"; sha256="0sggag0n66n25h6g2hlk194p6fxjaapqf8bwnzw18bkpbldm3hwg"; depends=[infotheo minet]; };
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BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.14.0"; sha256="0a1ksw3i7fkp84pxki5d1pnw8zryq9qapv4vxf7sgpi0q9gl1dci"; depends=[RCurl RJSONIO]; };
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Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.6.0"; sha256="0z7l5xbc23ws7jdzgx58y8nia8a588hfi785aislw7gsnki3qyry"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; };
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BayesPeak = derive2 { name="BayesPeak"; version="1.22.0"; sha256="1jmn8p461rmgjarf4rlhyqzrjg8xkpq56rlrk6964kqxp6jkh8bi"; depends=[IRanges]; };
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BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.22.0"; sha256="04ww55171fbv9170aknl2gbc0mqlpcvwjl9146xamxskc5hxivnh"; depends=[]; };
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BiGGR = derive2 { name="BiGGR"; version="1.6.0"; sha256="1bhjw46mwqyz67p82ag8y4jxvkhpd7d3a8flrs7h28d8srp9jvf8"; depends=[hyperdraw hypergraph LIM rsbml stringr]; };
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BiRewire = derive2 { name="BiRewire"; version="2.4.2"; sha256="0xzdbh0didyk4wwr1ac9n1dj1473iqgn7s3i5spj2mrvqkj6jrgm"; depends=[igraph Matrix slam tsne]; };
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BiSeq = derive2 { name="BiSeq"; version="1.10.0"; sha256="0vl0arr6chqvyysmajga91m5as54jsnx2z5a23pa7lzgvgv5xzij"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
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BicARE = derive2 { name="BicARE"; version="1.28.0"; sha256="1bnwnrv6bb5va2l54y1c560s7fkmknaayf0vs4pm2s4mdamy0k2k"; depends=[Biobase GSEABase multtest]; };
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BioMVCClass = derive2 { name="BioMVCClass"; version="1.38.0"; sha256="00dzbfq1rxwpp09cg2cl7rm989jidjnvw4rmmkiq8hkqv5r1mssn"; depends=[Biobase graph MVCClass Rgraphviz]; };
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BioNet = derive2 { name="BioNet"; version="1.30.0"; sha256="0h6s83fd2y8x1l5vibj4y154ljlbjybm91l42h0yf6gyymqci5g6"; depends=[AnnotationDbi Biobase graph igraph RBGL]; };
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BioSeqClass = derive2 { name="BioSeqClass"; version="1.28.0"; sha256="0pv63d57hck04dpha20pzyzz7przzvi536nmgnsig5zw16lis4f2"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; };
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Biobase = derive2 { name="Biobase"; version="2.30.0"; sha256="1qasjpq3kw8h7qw8cin3bjvv1256hqr1mm24fq3v0ymxzlb66szi"; depends=[BiocGenerics]; };
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BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.32.0"; sha256="0wn3a01l6d62prrncmy22dx4nqsgzq3lw24ybf676ghrmjaygmyc"; depends=[Biobase]; };
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BiocCheck = derive2 { name="BiocCheck"; version="1.6.1"; sha256="1vkhriswlk3p0xynbj2pjs9zkg9v168g3sbi0ripcbn9v93mcp89"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; };
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BiocGenerics = derive2 { name="BiocGenerics"; version="0.16.1"; sha256="0f16ryy5f012hvksrwlmm33bcl7lw97i2jvhbnwfwl03j4w7nhc1"; depends=[]; };
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BiocInstaller = derive2 { name="BiocInstaller"; version="1.20.1"; sha256="0lsqkx8q98rix4g7wfx78fnkzmz2mjb7m9wc9zgm69m0iyp50aad"; depends=[]; };
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BiocParallel = derive2 { name="BiocParallel"; version="1.4.3"; sha256="1f5mndx66vampcsq0n66afg6x851crl0h3nyv2nyp9bsgzj9cdzq"; depends=[futile_logger snow]; };
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BiocStyle = derive2 { name="BiocStyle"; version="1.8.0"; sha256="03lmw649fch64kcwyps6ry9qmjz7f0ydwhc4yzkl7d6lffgfvihc"; depends=[]; };
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Biostrings = derive2 { name="Biostrings"; version="2.38.4"; sha256="0cjd7i4bdwabzb02gm753aji5xaihkj5ak8nb0d32cclxbj0hp33"; depends=[BiocGenerics IRanges S4Vectors XVector]; };
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BitSeq = derive2 { name="BitSeq"; version="1.14.0"; sha256="1q58za8jd96bk2wxy7np0b7lar3v0pk6ll833k10x1b260rvpgbp"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
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BrainStars = derive2 { name="BrainStars"; version="1.14.0"; sha256="0r6jd6h48c15sg655079lwr9v1gl79wk8773w2q9fyfmakhj15vx"; depends=[Biobase RCurl RJSONIO]; };
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BridgeDbR = derive2 { name="BridgeDbR"; version="1.4.0"; sha256="0qb1xiyq993hfzdgjaw982hhvnd9lwwdzq6anr2r9dbpzsini136"; depends=[RCurl rJava]; };
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BrowserViz = derive2 { name="BrowserViz"; version="1.2.3"; sha256="009bpkns2kbg77lpxzy3jship1yvrff72kacb8zcdyg7npn64jcz"; depends=[BiocGenerics httpuv jsonlite Rcpp]; };
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BrowserVizDemo = derive2 { name="BrowserVizDemo"; version="1.2.3"; sha256="1pj9b0nhkrc3bcs36dpm2hy9lsfp2xwnrlf99b9v6n96ijki8bg9"; depends=[BiocGenerics BrowserViz httpuv jsonlite]; };
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BubbleTree = derive2 { name="BubbleTree"; version="2.0.1"; sha256="1qkvmddd7l1xg5459gd9w86d4k4rjm40c93k6piwzv8hrzr4mjzc"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer rgl scales WriteXLS]; };
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BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.34.0"; sha256="0f345lsj5khgys2apjid513psx79fdpzg6vm5ndn9iw1rkgafv9f"; depends=[]; };
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BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.34.0"; sha256="1i8b0s0g4yk8s99iw6bli494rbg169306b8idwl4sncjyl6mzj0c"; depends=[BufferedMatrix]; };
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CAFE = derive2 { name="CAFE"; version="1.6.0"; sha256="0mmfjb93apnn39g3jrfan4zmxz7axlc6mnv6464n44kysdxyh5a4"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
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CAGEr = derive2 { name="CAGEr"; version="1.12.0"; sha256="05hv46dqvqrw4kn9975wdbvvrk8hm07qjvx8dsdb4smaq67139kx"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; };
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CALIB = derive2 { name="CALIB"; version="1.36.0"; sha256="1b21f0zg4czhk4pbd3c3vbl0p4qpw0l4wg17lm1gw4b6d6ml7jsb"; depends=[limma]; };
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CAMERA = derive2 { name="CAMERA"; version="1.26.0"; sha256="0cjm98bzg5snpgd8kjj8nmk1j851rbdlidk2dbrjv373i31nf2gj"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
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CAnD = derive2 { name="CAnD"; version="1.2.1"; sha256="0ncpa81ac6dzkhqnr56i4nzzipsmzy44n71z6sdhpa39rgdar2a7"; depends=[ggplot2 reshape]; };
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CFAssay = derive2 { name="CFAssay"; version="1.4.0"; sha256="09bc40dck4xihksji1nmzls7qmlrgwqn2jav95x0i0461l20x2v9"; depends=[]; };
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CGEN = derive2 { name="CGEN"; version="3.6.2"; sha256="13p2f92sh6l7bqrigqaqpcbyk3czby82r2wdr3gmz6xfwsjxkfmc"; depends=[mvtnorm survival]; };
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CGHbase = derive2 { name="CGHbase"; version="1.30.0"; sha256="02q2yv7mbdjq1xby5bxydd0w6vzw9nim7ac6fb0rjpcnsxng0j82"; depends=[Biobase marray]; };
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CGHcall = derive2 { name="CGHcall"; version="2.32.0"; sha256="13f3dyska147cl2q5kn42fz3d9dm8j06cmszc4ssc0i2256cp6q0"; depends=[Biobase CGHbase DNAcopy impute snowfall]; };
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CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.24.0"; sha256="08paz9ij387b8x6bg1931q553j69ajk6i3lmj2jriqjdjii8wkv1"; depends=[Biobase CGHbase CGHcall]; };
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CGHregions = derive2 { name="CGHregions"; version="1.28.0"; sha256="1lnd6vwfdb1f6da4701f38vq8x4pqdp5f3p0m2j8g32qfj64vsz5"; depends=[Biobase CGHbase]; };
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CMA = derive2 { name="CMA"; version="1.28.0"; sha256="1jpjfcjhxjw3ghwr7bgkwyx7lx07v0kn1pxkhb6hs2jc7fyc8jp8"; depends=[Biobase]; };
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CNAnorm = derive2 { name="CNAnorm"; version="1.16.0"; sha256="06i4i4qbd0k0rs8l244igr6qrnfjsk5wqsxdc9vydxmnid15i7fk"; depends=[DNAcopy]; };
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CNEr = derive2 { name="CNEr"; version="1.6.2"; sha256="1ch2pwjimgrld501lfx213mbaz8a467m7mmd78ci9p2lhwyhl8xm"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; };
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CNORdt = derive2 { name="CNORdt"; version="1.12.0"; sha256="1ral42sa8ha43g3bsk3f9v9lz9962rhyjpzxa5ciq9zc1s0ymwfq"; depends=[abind CellNOptR]; };
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CNORfeeder = derive2 { name="CNORfeeder"; version="1.10.0"; sha256="1wgndfl1r21nrwr3gdrgz7qnnwcw5x6w55c3m5fjw6ypy8npsn1b"; depends=[CellNOptR graph]; };
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CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.12.0"; sha256="0636czqfy3jyhzi8xpplzxyxi9in9qysshld6pfqbx89l0nhagvm"; depends=[CellNOptR nloptr]; };
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CNORode = derive2 { name="CNORode"; version="1.12.0"; sha256="0q65285v4szwaq87skga9xcxixg1hbm3jw4ydv1k2g84b40611qs"; depends=[CellNOptR genalg]; };
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CNPBayes = derive2 { name="CNPBayes"; version="1.0.0"; sha256="06jw9xi0q5slh1xghgj1js5bn1gsmpag0w84cxa7qf5ls1bw4xp6"; depends=[BiocGenerics combinat foreach GenomeInfoDb GenomicRanges gtools IRanges matrixStats oligoClasses RColorBrewer Rcpp S4Vectors]; };
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CNTools = derive2 { name="CNTools"; version="1.26.0"; sha256="1dc57fyi0mr8y0kx17m2cnhwzn9cyc7f4fpmn1yr34ngvaj3dw66"; depends=[genefilter]; };
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CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.0.0"; sha256="0m37asnrdm7zl70j2d477lpxydnliv1d9bgb0vn0hkfrwsky5fhy"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq plyr Rsamtools xlsx]; };
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CNVrd2 = derive2 { name="CNVrd2"; version="1.8.1"; sha256="0xbibar60gm0jj5si1br26vkbw6kqf82796i3p5512wqvwfsbk8j"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; };
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CNVtools = derive2 { name="CNVtools"; version="1.64.0"; sha256="1sm28sl7ghcfrgjd0d741zfy21r6vxkhj8cn510z95aa49icpd8j"; depends=[survival]; };
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CODEX = derive2 { name="CODEX"; version="1.2.0"; sha256="006dmjcd84gnagm2gfqdxwfnrq30sc3zfvqz67wl3vpg951hpjws"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb Rsamtools]; };
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COHCAP = derive2 { name="COHCAP"; version="1.8.0"; sha256="1lak57k8b8jcd21wajr1ivi1sml73fsvb6jbdz6nxgjbq7al1hgk"; depends=[COHCAPanno WriteXLS]; };
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COMPASS = derive2 { name="COMPASS"; version="1.8.1"; sha256="1gqly197m0r9c8zbj7673ns94q3x7cwjdajv5aj714j63vmnv6fz"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; };
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CORREP = derive2 { name="CORREP"; version="1.36.0"; sha256="0hjkwl2mf173mfdrziiadf5hacz6j67skizch44rxc2kfj7sbhyb"; depends=[e1071]; };
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COSNet = derive2 { name="COSNet"; version="1.4.1"; sha256="0myckn066xjdm8kikqjcv1sarr8hdls1js4ak2hc97cl8is20a1r"; depends=[]; };
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CRISPRseek = derive2 { name="CRISPRseek"; version="1.10.1"; sha256="1pyif3a67z9fw3q2960sbbrb5si0xrdf04hahzm6vsqzryyvizkl"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table IRanges S4Vectors seqinr]; };
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CRImage = derive2 { name="CRImage"; version="1.18.0"; sha256="04nk7xx870hzvdnx5763v2rr82314zv6ydwhv8gmxpp2lg23hsdy"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
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CSAR = derive2 { name="CSAR"; version="1.22.0"; sha256="0d6adk3mq7grf8dsx822d2qf5jrdhvm551z26injic8i7v4i0s3h"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
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CSSP = derive2 { name="CSSP"; version="1.8.0"; sha256="05x0agbcpns8s3vmbs7ygdny249vcahzk7sqv50nz39ap2c7i309"; depends=[]; };
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CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.13.0"; sha256="0c3yjscd1jlgfl869vnv37qdb0y5gicnja1why9ws95qqgmij6zl"; depends=[AnnotationDbi limma qvalue]; };
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Cardinal = derive2 { name="Cardinal"; version="1.2.1"; sha256="1r3plzx39d85ipihsflliiczig3329frmxzyd2bwnmd3l91jf5dh"; depends=[Biobase BiocGenerics irlba lattice ProtGenerics signal sp]; };
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Category = derive2 { name="Category"; version="2.36.0"; sha256="0z6sj43y3wqfvkjvlk7hh08h5447bm3szcmd44y8s9lbkq954rxx"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GO_db graph GSEABase Matrix RBGL]; };
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CausalR = derive2 { name="CausalR"; version="1.0.1"; sha256="0z1vv5j4q9ap54w2xf923gdjdix7xd16k6lqvk5s5vapcnyy7v3r"; depends=[igraph]; };
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CellNOptR = derive2 { name="CellNOptR"; version="1.16.0"; sha256="1fig3brrc0hv48kx7lqbbykc9m2dzwy93cy70hlwqcs7b6phxq11"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
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CexoR = derive2 { name="CexoR"; version="1.8.0"; sha256="0h0q2a9k084dycxnj5lvdqs31hqqi7iza732m7kdgsazjfk5fzxg"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
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ChAMP = derive2 { name="ChAMP"; version="1.8.0"; sha256="079ks6ds7k2mphfw73zqldi4s6zn961qkynhnqiw6fmph9gg785z"; depends=[ChAMPdata DNAcopy GenomicRanges Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest impute IRanges limma marray minfi plyr preprocessCore RPMM sva wateRmelon]; };
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ChIPComp = derive2 { name="ChIPComp"; version="1.0.0"; sha256="1ayg98kvh9yqj132r2fw9cdq38na64rw6rmrpqkgfj1csv4q7wiy"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; };
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ChIPQC = derive2 { name="ChIPQC"; version="1.6.1"; sha256="1mw17flai6gk3sp08776sdl3mlmdq5xla7ghjq2rqk89qn5grpci"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; };
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ChIPXpress = derive2 { name="ChIPXpress"; version="1.12.0"; sha256="0k7z1ndjl869nqc0ajl437994qrfrfj5hi92h0z5qyv3vailfgsy"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; };
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ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.4.6"; sha256="0pgy2x80y7rxbarbczrz8ijacc1pv05c8y42a47zc4yaxg14pzfj"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI ensembldb GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges limma matrixStats multtest RBGL regioneR S4Vectors VennDiagram]; };
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ChIPseeker = derive2 { name="ChIPseeker"; version="1.6.7"; sha256="0ffs87i1kc8ckx29rdx173fzyaiqmpw1h5rgy39dk5r6mla4xj0k"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; };
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ChIPseqR = derive2 { name="ChIPseqR"; version="1.24.1"; sha256="17v7wlkf4hblp499v90fxai710fn4syx1n3dbfa1kbiyr218gdbz"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
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ChIPsim = derive2 { name="ChIPsim"; version="1.24.0"; sha256="0nazrzjpc1y88d1yj1qpmkcjnds4w6921ag7m6gypp8hwzzypqnn"; depends=[Biostrings IRanges ShortRead XVector]; };
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ChemmineOB = derive2 { name="ChemmineOB"; version="1.8.2"; sha256="02bsf78skr7mi725h0qmjixlfjq456y23cyjjmkrk6wivkjd806d"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
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ChemmineR = derive2 { name="ChemmineR"; version="2.22.3"; sha256="0s1hwvfpf90j74gwj1hbd4mm84qf5l0hz5wd3l1fd2jnavv4z8x8"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; };
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ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.24.0"; sha256="1pjw05ig4wyh455z0xwplfl12z8mbi25k5ylwmymgm41pqy5n2a6"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; };
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ClassifyR = derive2 { name="ClassifyR"; version="1.4.15"; sha256="0zxvk875y05z52mp8v09wvrxfxs8qacpcll4cg9px5pyx361fbkj"; depends=[Biobase BiocParallel locfit ROCR]; };
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Clomial = derive2 { name="Clomial"; version="1.6.0"; sha256="0x6j3qjnwh31c11gq2fqyhapc5wrd9szk9bphcgsbf7n317gbf61"; depends=[matrixStats permute]; };
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Clonality = derive2 { name="Clonality"; version="1.18.0"; sha256="0rx3k8c55q831dhfh5dpkl3px8jj6glx6i3la80r9krx68mbp947"; depends=[DNAcopy]; };
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CoCiteStats = derive2 { name="CoCiteStats"; version="1.42.0"; sha256="08xg3583qx0v5agsq1im5f1sna32i58mhpgvvsa0ccfnbbh9klpw"; depends=[AnnotationDbi org_Hs_eg_db]; };
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CoGAPS = derive2 { name="CoGAPS"; version="2.4.0"; sha256="1dl3dmhfp2sjmqnvpgpqggnzrfg1w6yf5r34al2y4yngkg8s6cds"; depends=[BH gplots RColorBrewer Rcpp]; };
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CoRegNet = derive2 { name="CoRegNet"; version="1.6.0"; sha256="0ynizawrygpka2isldbfmnlz1zqczx2fv1kbvz1lbm9qwbpj7rn4"; depends=[arules igraph shiny]; };
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CompGO = derive2 { name="CompGO"; version="1.6.0"; sha256="0n84z3mhg6zb3yafz0803g6cggzpbw31fn933q9bg7pybij0nf1p"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; };
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ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.6.0"; sha256="113l7ykgxqnrbr4rz3cpa39k3n6i67zkxindcacpv35pncmasi6c"; depends=[circlize colorspace dendextend GetoptLong GlobalOptions RColorBrewer]; };
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ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.24.0"; sha256="13fy6qzqnph6xlbkshz2x8n20s5fhx6agawqb1wpvpvh4gcpa6g3"; depends=[ALL Biobase cluster]; };
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CopyNumber450k = derive2 { name="CopyNumber450k"; version="1.6.0"; sha256="0z4v6x140gzaxf06a73d2qd6dp8gvq62l8xb7bii21r7n089m14i"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; };
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CopywriteR = derive2 { name="CopywriteR"; version="2.2.0"; sha256="0hmww433hyg4wgi2hx49mwrd4y65myyi00akys3mhdsxn3s0al13"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
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CorMut = derive2 { name="CorMut"; version="1.12.0"; sha256="0ldqw4g15i4r1nv74msn97c75wcr1nvwk1ffnkafvnc8bwcfzfmy"; depends=[igraph seqinr]; };
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Cormotif = derive2 { name="Cormotif"; version="1.16.0"; sha256="0kx4h5c3vqr0x7swgq7fbkfqpknkapvqwvfmk42yh26vlabaf9cr"; depends=[affy limma]; };
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CoverageView = derive2 { name="CoverageView"; version="1.6.0"; sha256="0z3z2s5p1xrc04gzmmry3n9qqk4cam2p7pw7mak8kiswdraba7iz"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
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DAPAR = derive2 { name="DAPAR"; version="1.0.0"; sha256="1fcsgrhs64dbr11bzi9zr4ddam5z0an26pfdd06v6i80yxx95zsq"; depends=[Cairo ggplot2 gplots impute imputeLCMD knitr lattice limma MSnbase norm pcaMethods png preprocessCore RColorBrewer reshape2 tmvtnorm XLConnect]; };
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DART = derive2 { name="DART"; version="1.18.0"; sha256="0xghg36gfd6hyd8zd3l9c2ffk2s0c8jpgg8skvg7d70hzhm47ldb"; depends=[igraph]; };
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DASiR = derive2 { name="DASiR"; version="1.10.0"; sha256="1by2655qvskzynvbh47vydm6nl2cmnfqqs25453k29n672a6yyw4"; depends=[Biostrings GenomicRanges IRanges XML]; };
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DAVIDQuery = derive2 { name="DAVIDQuery"; version="1.29.0"; sha256="0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2"; depends=[RCurl]; };
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DBChIP = derive2 { name="DBChIP"; version="1.14.0"; sha256="1x876cv2j0bdb7jflm663bp7xk32rsxpf9jwwskbl8r4r1ffsapa"; depends=[DESeq edgeR]; };
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DChIPRep = derive2 { name="DChIPRep"; version="1.0.4"; sha256="0cwggkpbza25r2yssyhs9zkwzncmxkd406k2sn2y0rq1kdi08hj2"; depends=[assertthat DESeq2 fdrtool GenomicRanges ggplot2 plyr reshape2 S4Vectors smoothmest tidyr]; };
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DECIPHER = derive2 { name="DECIPHER"; version="1.16.1"; sha256="0bh3c0v3fpvb9k7n3d405615hgp08fq463xlc67wz9h3l47wjrh7"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
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DEDS = derive2 { name="DEDS"; version="1.44.0"; sha256="079c3in183ybp0c46hqh99grqmbshsnrcax3qz08z5xbc394azna"; depends=[]; };
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DEGraph = derive2 { name="DEGraph"; version="1.22.0"; sha256="0bjyvw218f8z0qn655idvrhg79jshya9qprmlwy28h81cn548pm8"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
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DEGreport = derive2 { name="DEGreport"; version="1.6.1"; sha256="09srzwgjqwbadxj7a7rs1dylyqm8k7f4hjrhsb3k06nsbjfbfyd0"; depends=[edgeR ggplot2 Nozzle_R1 plyr quantreg]; };
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DEGseq = derive2 { name="DEGseq"; version="1.24.0"; sha256="0yzi6bil4qj85qxa843j3s6m6qb33gy73s6fyap94cjqj72v6809"; depends=[qvalue samr]; };
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DESeq = derive2 { name="DESeq"; version="1.22.1"; sha256="14rc1zcn4a7hkm43ca9js5ffhcm3awjrpl5bx66fj3szibjnnzcb"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; };
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DESeq2 = derive2 { name="DESeq2"; version="1.10.1"; sha256="0f3jz578z83bzlqv27vhbcrz4lab6qycf6dy4cdfgvybx1k35dn9"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
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DEXSeq = derive2 { name="DEXSeq"; version="1.16.10"; sha256="0rz2zvwwc13zjxlfqv38kx1kid6qqsii5gflhaaa4xgp8qk3y9f1"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; };
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DFP = derive2 { name="DFP"; version="1.28.0"; sha256="186f8lkw7c37mxixp8qa0xg21c47yf6da1l80k7ngdan86q80cs2"; depends=[Biobase]; };
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DMRcaller = derive2 { name="DMRcaller"; version="1.2.0"; sha256="1rkzbfaa7bx3bpfdppx3xzrpxinmgj1frzxird966xk2b40m4bd4"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
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DMRcate = derive2 { name="DMRcate"; version="1.6.52"; sha256="0nvwh7jd62yh5v12s1b71797zawkaj3x4ibmgmzisg8zkxpl8fwq"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi plyr]; };
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DMRforPairs = derive2 { name="DMRforPairs"; version="1.6.0"; sha256="0b5mkhb5gkvfccvpgvklb3ksnq9gv6napcvxzcrph46nmm11i8zc"; depends=[GenomicRanges Gviz R2HTML]; };
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DNABarcodes = derive2 { name="DNABarcodes"; version="1.0.0"; sha256="1wc2rcd7bc2yawm20frnx6xrkflglkcc9l27l91l349pdgsidcpm"; depends=[BH Matrix Rcpp]; };
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DNAcopy = derive2 { name="DNAcopy"; version="1.44.0"; sha256="1c1px4rbr36xx929hp59k7ca9k5ab66qmn8k63fk13278ncm6h66"; depends=[]; };
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DOQTL = derive2 { name="DOQTL"; version="1.6.0"; sha256="0sl7a1hhszrfxn52iw7cz6sl38y7mwk4giw3a7kqj22f1p6bhc6y"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; };
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DOSE = derive2 { name="DOSE"; version="2.8.2"; sha256="1mbp55swmnb8ag5c8cz30wxrr0xiwhrbl6z6r6ls20cvldzc2dfa"; depends=[AnnotationDbi DO_db ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
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DSS = derive2 { name="DSS"; version="2.10.0"; sha256="06a7cs9i12p9zfv52hl4v3fll4dhaapjhq6fqc58mqlzfa8qlwdm"; depends=[Biobase bsseq]; };
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DTA = derive2 { name="DTA"; version="2.16.0"; sha256="1j3dab7w9nqnbxyckwxhm733dvpdqyg22h60ipijyjwq2d1l8znc"; depends=[LSD scatterplot3d]; };
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DeMAND = derive2 { name="DeMAND"; version="1.0.0"; sha256="1dcq5hvpdaihagg1rasbrhamaf938zh5b1lh7ynd0q52qpr5fm56"; depends=[KernSmooth]; };
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DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.12.0"; sha256="1dnq44l20b2n9skyz9kl4dck5vlir2jiyy265jgvgw4xji1gwi7l"; depends=[ggplot2 limSolve pcaMethods]; };
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DiffBind = derive2 { name="DiffBind"; version="1.16.3"; sha256="1mgnjfd3k5d44lzlzs4wms7mljbfrpqcs50g7jj4wk8y7jb21qyx"; depends=[amap edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rsamtools SummarizedExperiment systemPipeR zlibbioc]; };
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DiffLogo = derive2 { name="DiffLogo"; version="1.0.0"; sha256="10p93wwndvr2y4mfnh7y23gyr9i7lskgp1sa43261s4zjhynsp1k"; depends=[cba]; };
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DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.12.1"; sha256="1izxlcj4niyj2f4wqfjpajrki7lggr1xd8kvjmhmbqz1p932rryf"; depends=[IRanges S4Vectors]; };
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DriverNet = derive2 { name="DriverNet"; version="1.10.0"; sha256="15iimcjdj28nbiksc9v6gw2i9mpkvbwkk8zcia1b7yklwb33assp"; depends=[]; };
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DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.10.2"; sha256="168dajb9ism63k4kgj37b6znkia3ch6p3rzbzzjy3qbyyazzd9b2"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; };
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DupChecker = derive2 { name="DupChecker"; version="1.8.0"; sha256="0p75kq178mls765q2v22bj7a727hb1v5rj4wkcagxavcls92vg0p"; depends=[R_utils RCurl]; };
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DynDoc = derive2 { name="DynDoc"; version="1.48.0"; sha256="098idkx8m01gy0rylh67v5qnbx8bplyymc9il5sfpdv1hpc9abm3"; depends=[]; };
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EBImage = derive2 { name="EBImage"; version="4.12.2"; sha256="1p49dap5nn9nwpglssl7fmlgvi1a1k0cpzdxph6x82kcm346srn4"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
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EBSeq = derive2 { name="EBSeq"; version="1.10.0"; sha256="19slkx8b9p54vg4d3895kjsz4gij9pag1i3f351ypn0yx19skb80"; depends=[blockmodeling gplots testthat]; };
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EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.4.0"; sha256="02ba8famhbp4nxkg8jkwzs63qkfi7hi03h6w1igl2xn2343fnla3"; depends=[EBSeq]; };
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EBarrays = derive2 { name="EBarrays"; version="2.34.0"; sha256="06kh68i7fjbi99rl8jp9vhbpywsr0x0fmyny83gzkbr192c8dvdw"; depends=[Biobase cluster lattice]; };
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EBcoexpress = derive2 { name="EBcoexpress"; version="1.14.1"; sha256="1xdgzw4pik02mzs6h4fv3x3z4kgmz2am7562b7q83ppv4hr2qjgq"; depends=[EBarrays mclust minqa]; };
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EDASeq = derive2 { name="EDASeq"; version="2.4.1"; sha256="1jjk36sjbxs4sa2j87bayi5prgk3zmkc9vnm0grj9lgjdm6ficbb"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
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EDDA = derive2 { name="EDDA"; version="1.8.0"; sha256="0gqgq57a11k7iygjyf3bszx8gm90a8frabmzib7kk84k3wrvynqg"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
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ELBOW = derive2 { name="ELBOW"; version="1.6.0"; sha256="1kpprsv1s08qks10raqdh82c9w8dg0saxa1ahhnk1a2whzxj0n3m"; depends=[]; };
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ELMER = derive2 { name="ELMER"; version="1.2.1"; sha256="0ppr30l43fiak0x798w3i2w1as1gycxnd34iplm1i39lzsdni7z4"; depends=[BiocGenerics ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi reshape S4Vectors]; };
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EMDomics = derive2 { name="EMDomics"; version="2.0.0"; sha256="13rcbkyyk1l6xqklmws1ilnzyhal7g99499rnh0wlxbrwsb9n51w"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; };
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ENCODExplorer = derive2 { name="ENCODExplorer"; version="1.2.1"; sha256="18m42w9amjxz3d50zx5p7nvjc4kjbqhlmrqcnxy4jfyzm7sm7qby"; depends=[jsonlite RSQLite]; };
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ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.18.0"; sha256="1fyp6qyvw5cbapnpjx1s86pss2xhv98s4lqxfxwrsng6p1jh5z89"; depends=[rJava XML]; };
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ENmix = derive2 { name="ENmix"; version="1.4.1"; sha256="191mm9pn53sys62736qf8kn84jxr9x5r39j4qbwyqq32gsjvq6ji"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; };
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EasyqpcR = derive2 { name="EasyqpcR"; version="1.12.0"; sha256="0s0ir8bpj3fwg79mzqz57c0crkqqq7hywiwyihcz2cykhsm1r11g"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; };
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EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.0.0"; sha256="02mdn7isc58fznm55qxfp1an19wfl3kj509467c9r10b5zl5mglk"; depends=[ComplexHeatmap GenomicRanges IRanges locfit matrixStats]; };
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EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.0.14"; sha256="1sia76zmcpb8r3fq136ilcpnwpsa3myl385b3k2kc3hpqchi0rj1"; depends=[AnnotationDbi Biobase biocGraph biomaRt ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph GSEABase hwriter KEGGgraph KEGGREST limma MASS mixtools neaGUI npGSEA PathNet pathview ReportingTools Rgraphviz S4Vectors safe SparseM SPIA stringr SummarizedExperiment topGO]; };
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ExiMiR = derive2 { name="ExiMiR"; version="2.12.0"; sha256="0c37jkych7pgahfdbwqqffg6746cfxwv7q10pqpnjsdg075pw8q9"; depends=[affy affyio Biobase limma preprocessCore]; };
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ExpressionView = derive2 { name="ExpressionView"; version="1.22.0"; sha256="1gwhz8q5kyi01jwlwpd39dp292pc6k4v1w0al4653151qb5m55ja"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; };
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FEM = derive2 { name="FEM"; version="2.6.0"; sha256="1pwbn2igwrd50wn8402f3zwd22h4c8anjmbrls2i6h86ardl046f"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; };
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FGNet = derive2 { name="FGNet"; version="3.4.0"; sha256="0pvzy185wqd9rnzc2py92zmpxywi8ysk9a7dh3415m748knw4rz8"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
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FISHalyseR = derive2 { name="FISHalyseR"; version="1.4.0"; sha256="0vn83slaaphw9nxp7yp6v8xp5n6kqd2zzvv7v4bn9jfi4cskxbib"; depends=[abind EBImage]; };
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FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.6.0"; sha256="05q3cbm9v9wq0av607gx526989a88lsbdaaskgac4dcfwwb6s5xy"; depends=[fda MASS]; };
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FindMyFriends = derive2 { name="FindMyFriends"; version="1.0.7"; sha256="0ga0iwscbcczysldizgp8g19gsyszfw4vgbgs45q9px95603z0cg"; depends=[Biobase BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; };
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FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.2.0"; sha256="1y1y7g9111z55cwi2ph44yqib41234g77xwsybk6irlq1anizz7p"; depends=[RCurl XML]; };
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FlowSOM = derive2 { name="FlowSOM"; version="1.2.0"; sha256="019qzh7h0bygxi4b4si1zxavx99121has7jry7swkglwss2qx0ri"; depends=[BiocGenerics ConsensusClusterPlus flowCore igraph tsne]; };
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FourCSeq = derive2 { name="FourCSeq"; version="1.4.0"; sha256="1xh0l90hp6jy9j0xkh78dm9kyk90zzlg04yfrzd4v12mwljs8r19"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
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FunciSNP = derive2 { name="FunciSNP"; version="1.12.0"; sha256="1125ismkp2sprshv4b39l6bycdlry3933jaliva17c0bgjr27jhm"; depends=[AnnotationDbi ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges org_Hs_eg_db plyr reshape Rsamtools rtracklayer scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
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GENE_E = derive2 { name="GENE.E"; version="1.10.0"; sha256="1czm1j144i842d7lf01c9gmyifikp4a66sq49i7rgpzbiz3pndkf"; depends=[RCurl rhdf5]; };
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GENESIS = derive2 { name="GENESIS"; version="2.0.1"; sha256="1v8d114z6sbqqvf4sbw3wzifzqrig2yjmppmq0jnjyrjag3ph1ab"; depends=[gdsfmt GWASTools]; };
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GEOmetadb = derive2 { name="GEOmetadb"; version="1.30.0"; sha256="1jw4n5p7vd75qhz7r7ll6ydsdrgmrclb8p0sks4xz3l87cd03pb3"; depends=[GEOquery RSQLite]; };
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GEOquery = derive2 { name="GEOquery"; version="2.36.0"; sha256="18scw6jx4z7zab653if686cn1kyy0v2i7dfvvxb05wsrj7blmai1"; depends=[Biobase RCurl XML]; };
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GEOsearch = derive2 { name="GEOsearch"; version="1.0.1"; sha256="1zag3rg2cfs0zfh092rzwhshnkncrv2p88flz9hy2n350k1xnyc4"; depends=[org_Hs_eg_db org_Mm_eg_db]; };
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GEOsubmission = derive2 { name="GEOsubmission"; version="1.22.0"; sha256="0djm7r2g2c0k5img45v9a56gfppx0qwfla8di01fvphlwag21gi1"; depends=[affy Biobase]; };
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GEWIST = derive2 { name="GEWIST"; version="1.14.0"; sha256="0k6zk4g0rsfjvf30sx588xfrvi31vwnh5fysz9rigbkvrhayv12r"; depends=[car]; };
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GGBase = derive2 { name="GGBase"; version="3.32.0"; sha256="15vvwigv9xy87dl2c795c3abpnrzr364m4sbslmns403rg8dpsiw"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
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GGtools = derive2 { name="GGtools"; version="5.6.0"; sha256="1ndvlyfzjn519z9zh6kf5sdjaz3ckracgyf2lxp23nchm2311lf0"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
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GLAD = derive2 { name="GLAD"; version="2.34.0"; sha256="18ahik48499j6yf6h7k8f05s7w50b5fzs2hcz33zz36mlppz4xnr"; depends=[]; };
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GOFunction = derive2 { name="GOFunction"; version="1.18.0"; sha256="00pdxf24sxdnh31h69c5zjhl1j2jv1ag91ay3a9w62p07bcg82l6"; depends=[AnnotationDbi Biobase GO_db graph Rgraphviz SparseM]; };
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GOSemSim = derive2 { name="GOSemSim"; version="1.28.2"; sha256="04qyxy9adqk37hwgnx4kqa8p8fsrl1d1cf0cc9y2mq6wxq0ilw27"; depends=[AnnotationDbi GO_db Rcpp]; };
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GOSim = derive2 { name="GOSim"; version="1.8.0"; sha256="14dyazr7p9p7h1cckbmd5yjj76718lqgfnqbcrrz52qyk0dqz6wx"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; };
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GOTHiC = derive2 { name="GOTHiC"; version="1.6.0"; sha256="0fbrflqyfihks23mxmqn8v4mm5m1ff4zzg52lfxdz3an72mvznv6"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; };
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GOexpress = derive2 { name="GOexpress"; version="1.4.1"; sha256="16ckxdlzsx8p2qli55008j59xf88yf7b62z3nilxh5fvnr92900w"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; };
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GOstats = derive2 { name="GOstats"; version="2.36.0"; sha256="0jxzlipz27pm2iijgiczpnjlda9fj8y00sbbksyyr3i1rjx72vp5"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL]; };
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GOsummaries = derive2 { name="GOsummaries"; version="2.4.5"; sha256="0qbvgg1g17dxrn80smrd0ab0mk63xbzv8zrrdrlwd4fdvr0ysc96"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
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GRENITS = derive2 { name="GRENITS"; version="1.22.0"; sha256="1i1mbc7sd0irc0da0pz876dibvyx451h9475hlq9ydw6q04kfjzq"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
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GSAR = derive2 { name="GSAR"; version="1.4.0"; sha256="0l0vid5ba3yj8ywdj904zvm6gyvig1drxvr1b4xidyd0g0fpl6a9"; depends=[igraph]; };
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GSCA = derive2 { name="GSCA"; version="1.8.0"; sha256="06pjmi5xc8hld09pmw87lwk5wa7cyd9qb2h32qmblc56wai7qxny"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
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GSEABase = derive2 { name="GSEABase"; version="1.32.0"; sha256="1jjl5x7qrw83v0g0d6c27g5jk5zwjd31h0p4ghprr7y34cbddaas"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
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GSEAlm = derive2 { name="GSEAlm"; version="1.30.0"; sha256="1gxa973l3m3jdxmvx0y0fnhpxd81bg03j6p9b0dcbhw93pdnjhsv"; depends=[Biobase]; };
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GSRI = derive2 { name="GSRI"; version="2.18.0"; sha256="1jjzkgaf2scnqasjd1nbxrfm5k97psyxy0d2grb23aznfviynmsy"; depends=[Biobase fdrtool genefilter GSEABase les]; };
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GSReg = derive2 { name="GSReg"; version="1.4.0"; sha256="1qq0lrx2mvwzf7s4v8i162fpb68njm5sscz4h22hyskdxrjkk8vp"; depends=[]; };
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GSVA = derive2 { name="GSVA"; version="1.18.0"; sha256="1w17a5d4vd4gibg88npbx86pmcg7wzqnih1a3g4mpvld0wf2xs8q"; depends=[Biobase BiocGenerics GSEABase]; };
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GUIDEseq = derive2 { name="GUIDEseq"; version="1.0.4"; sha256="03hswcshnvb7pmacxnx6lrqqy6fxprjkv9sydjkca5nvd84i7bdz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomicRanges IRanges matrixStats S4Vectors]; };
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GWASTools = derive2 { name="GWASTools"; version="1.16.1"; sha256="09zkwh5zcrfss2kdj81jdcs6i9i123xis3myj73f4si74bd1dq83"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; };
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GeneAnswers = derive2 { name="GeneAnswers"; version="2.12.0"; sha256="1gacvc1vd0sl6jn0r14w4n37hsrmx6m5k1l7d2a5m3qssyk6l6n3"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
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GeneBreak = derive2 { name="GeneBreak"; version="1.0.0"; sha256="0bzb1wzj9jj069x6ikns4743h5kc4nmdf5j7mm2w2lrfa1x1v1dd"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; };
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GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.16.0"; sha256="1vb7qj2pgg8s51c43y12r1ar68jdaf3xrmmwvq8r182ky3cs45j7"; depends=[Biobase PGSEA]; };
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GeneGA = derive2 { name="GeneGA"; version="1.20.0"; sha256="1pnpcqrfvzff2fyakapkk48l76vx960617l2nbm0pbsv98sdygb2"; depends=[hash seqinr]; };
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GeneMeta = derive2 { name="GeneMeta"; version="1.42.0"; sha256="0r6ch9xylv3zfcfm95fy6civcg322dw43vadlw9asv9pkd80fai9"; depends=[Biobase genefilter]; };
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GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.12.0"; sha256="00gqrsnfizf2gspqazjg6iyhvazgs67jsakx588643ss5fbdmxkv"; depends=[graph plyr Rcpp]; };
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GeneOverlap = derive2 { name="GeneOverlap"; version="1.6.0"; sha256="0hc7khxgpic2h5s60gnjrr89i4lq4v3jb8d1333bvi5yqvj45qip"; depends=[gplots RColorBrewer]; };
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GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.26.0"; sha256="08wi95jgbf3ldylfhx78kc390bfj3wvl2ymvs9yqpjk57q8hjq8w"; depends=[affxparser Biobase Biostrings RColorBrewer]; };
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GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.14.0"; sha256="05wcx826932i78k1fnl1ifjwzdz95i4bq0picm44wb4s13pv31my"; depends=[Biobase limma MASS survival]; };
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GeneSelector = derive2 { name="GeneSelector"; version="2.20.0"; sha256="179mjqk9w4zm33mhja7hmwphpnxsv32mh60avs2mqmq9fi9z6pdh"; depends=[Biobase limma multtest samr siggenes]; };
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GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.38.0"; sha256="1yh8s40fr0yqbch7ix9y4p22ih0008xpjy5nn5x37y575l41hhwh"; depends=[gmodels gtools mvtnorm]; };
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GeneticsPed = derive2 { name="GeneticsPed"; version="1.32.0"; sha256="0ysrjrs30kqcfafjc5wzz2f4w59jhfk5ywyzn8rgagajvdzcg6z4"; depends=[gdata genetics MASS]; };
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GenoView = derive2 { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v"; depends=[biovizBase GenomicRanges ggbio ggplot2 gridExtra]; };
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GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.30.0"; sha256="1wkjcg6w95wlrdgaskc3xndl0azmxhxnsipf9qrj057gf2rpx7zf"; depends=[biomaRt]; };
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GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.6.3"; sha256="1ggp005n2rlkad00ilzn95y4rd484yr1chdhnd6fwg45rbi94d63"; depends=[BiocGenerics IRanges S4Vectors]; };
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GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.6.3"; sha256="02b9j1pfd39bkvb623k5k0ziq9rpw093hifqw65vb954dwj29jhd"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
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GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.22.13"; sha256="0n3rkj66la6wizgcsf2rmwcsyfxz9kv5zak337lmk1raqfnancz4"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; };
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GenomicFiles = derive2 { name="GenomicFiles"; version="1.6.2"; sha256="14f3zw2vxmb3b6gxxvdvfj34hxp3b3n4k6qx80ycw8kpdr5r73n4"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
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GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.4.2"; sha256="1a8b57dxla9hqzdn22jxb3ivl3i2xz41abrb7mgkxphgv55jf190"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph IRanges Rsamtools S4Vectors stringr]; };
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GenomicRanges = derive2 { name="GenomicRanges"; version="1.22.4"; sha256="02df5683nrpn9d10ws8jz9b55nr9055hh882xp2i154xdddir0k0"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
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GenomicTuples = derive2 { name="GenomicTuples"; version="1.4.5"; sha256="0aiyk5hd6i6j5f2lp72nyqh8arp41aadzamdgkghwmnxhipm3czs"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
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Genominator = derive2 { name="Genominator"; version="1.24.0"; sha256="1rqzxbji5wh6dshjsprj1mzps08l07gxmjir9naj6lsj2q0xhn9p"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; };
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GlobalAncova = derive2 { name="GlobalAncova"; version="3.38.0"; sha256="011yf2bng9qb7rgds670ranp9z5qm569405qpk5y6xb9rvnpnxy3"; depends=[annotate AnnotationDbi corpcor globaltest]; };
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GoogleGenomics = derive2 { name="GoogleGenomics"; version="1.2.0"; sha256="1z87jmd5vzg5v93bv9k3998wqhnk5p2v9d2qr9g0xxjvxw2q78fm"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; };
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GraphAT = derive2 { name="GraphAT"; version="1.42.0"; sha256="036g6cc9r96jgj7nhlgmq0jn553hajyalwibkdnw7qy88d45c8qz"; depends=[graph MCMCpack]; };
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GraphAlignment = derive2 { name="GraphAlignment"; version="1.34.0"; sha256="0af3m51zs35v84h4vj02fwm50iw2rk32jrixdbcw033ispl7wrkv"; depends=[]; };
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GraphPAC = derive2 { name="GraphPAC"; version="1.12.1"; sha256="1fa64jam3cl1khv8jspwjb9myifmgx0kwg0b601bia578bjcdj7d"; depends=[igraph iPAC RMallow TSP]; };
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GreyListChIP = derive2 { name="GreyListChIP"; version="1.2.0"; sha256="0pnyk05fri2pgin9ppyq2lk5rsc4cays5za6vhgdsjvv08sxyykz"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer]; };
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Guitar = derive2 { name="Guitar"; version="1.7.0"; sha256="0ld2ghyq3f02as01jzwkbc0wbly1g40bqy5mmvvrj87b8l235h10"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; };
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Gviz = derive2 { name="Gviz"; version="1.14.4"; sha256="16vca86mrpl2m9w0456cj7wj6dhdg0iqxj3z9dlia5wh56p00ryp"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
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HCsnip = derive2 { name="HCsnip"; version="1.10.0"; sha256="0x4lpx13bhr2w5yhrcsc89g0x4q1dy0j588h210ziizgh67qqcrs"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; };
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HDTD = derive2 { name="HDTD"; version="1.4.0"; sha256="0d3aycz0j34iqg8xqqnga8x6ynwn0b551qizpqby8j5whlrgdw76"; depends=[]; };
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HELP = derive2 { name="HELP"; version="1.28.0"; sha256="0m5hk3215q2gr59agzjzdbqkxkf292injxrn1ji1n29vbfzjhd41"; depends=[Biobase]; };
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HEM = derive2 { name="HEM"; version="1.42.0"; sha256="08xbpvw3bm3hsri7z8gvivffi99ai0b4a17jkah1siy5d3wnzvci"; depends=[Biobase]; };
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HIBAG = derive2 { name="HIBAG"; version="1.6.0"; sha256="0haxbzylzprcylc90aw9637g7isdvrd1j9936rnzjv442qp6a0i0"; depends=[]; };
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HMMcopy = derive2 { name="HMMcopy"; version="1.12.0"; sha256="1l0ynzk8cg9i1dcb2q724p0gk0gxcrcmr9ndlvjm1jq9f2cd9lma"; depends=[geneplotter IRanges]; };
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HTSFilter = derive2 { name="HTSFilter"; version="1.10.0"; sha256="0yfmjn1hq2dr8bh3f77kl0i4md18q4l6sfpvlsi7bf12r9cg3677"; depends=[Biobase DESeq DESeq2 edgeR]; };
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HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.22.0"; sha256="01mb273v1i9k0d2gbl9mpmr4rrnx49s3srv0yh1znvmwx0hmfyq2"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; };
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HTSeqGenie = derive2 { name="HTSeqGenie"; version="3.20.1"; sha256="0bg86jiv45899gw9x4hhvqf525vfwkzj2b5jk7026cq5vmjc0k5j"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead VariantAnnotation VariantTools]; };
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HTqPCR = derive2 { name="HTqPCR"; version="1.24.0"; sha256="1bjnirp3ha5ymnv1xyh02d77w7gp36qk62gjfzkbsnhwbwajpdkx"; depends=[affy Biobase gplots limma RColorBrewer]; };
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Harshlight = derive2 { name="Harshlight"; version="1.42.0"; sha256="1b2ggv680ckj0350a2y36vlm1dszk5gx3b60qf61cqb8a0mzcyb4"; depends=[affy altcdfenvs Biobase]; };
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Heatplus = derive2 { name="Heatplus"; version="2.16.0"; sha256="1mp31d9gd313kzx2d6nymapqxhzpd8n15li5xl52wq10w574lpc0"; depends=[RColorBrewer]; };
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HiTC = derive2 { name="HiTC"; version="1.14.0"; sha256="0vdlj9jslvqx73d766bn9zr8drnhd334n053xmc340s2vjs7s4nq"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
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HilbertCurve = derive2 { name="HilbertCurve"; version="1.0.0"; sha256="03yb9w4qn7c1p4yvgkcf6bjq3ms52w9jydknjryzf65gciy9m2mj"; depends=[GenomicRanges HilbertVis IRanges png]; };
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HilbertVis = derive2 { name="HilbertVis"; version="1.28.0"; sha256="1shs6frmbfvkl8pg1nbiqlm5i9ngq6pin67gkxs5v8xw5q9rk7ya"; depends=[lattice]; };
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HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.28.1"; sha256="1hqfjy4c4vqyz62ycia8b696cglqxbav97cxbivd6f8a578a4d5f"; depends=[HilbertVis]; };
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HybridMTest = derive2 { name="HybridMTest"; version="1.14.0"; sha256="0mgdqp6s7lfywxqymap27lbz6hgmq6rczmy2dnhdk2wwl96gp68k"; depends=[Biobase fdrtool MASS survival]; };
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IMPCdata = derive2 { name="IMPCdata"; version="1.4.0"; sha256="06ch3cp15ffch82gdqiwnnlakshdl2mmvq99c9iq5prp89vk41d6"; depends=[rjson]; };
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INPower = derive2 { name="INPower"; version="1.6.0"; sha256="1jdsvglgipmzjjaz972b7xbcykynck4326r8d5bxm8yh2hv7nshv"; depends=[mvtnorm]; };
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INSPEcT = derive2 { name="INSPEcT"; version="1.0.0"; sha256="0a7jkw4wlp05aknzc9mf9r3kfrzgmhdjmykp796s3cyjjxksk74j"; depends=[Biobase BiocParallel deSolve GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve]; };
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IONiseR = derive2 { name="IONiseR"; version="1.0.1"; sha256="0qfvrzc0ik868160zz7pwlcq1mycf9ax0mdx5gv2zvqmaxibjkiz"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; };
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IPPD = derive2 { name="IPPD"; version="1.18.0"; sha256="1kl4rx6rdmpkm7bd2w8ncvz4sb8x6wljvxkif2l17yflsp1wjvp2"; depends=[bitops digest MASS Matrix XML]; };
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IRanges = derive2 { name="IRanges"; version="2.4.8"; sha256="0hi5k1j5jm4xrg1l506g279qw1xkvp1gg1zgsjzpbng4vx4k4iyl"; depends=[BiocGenerics S4Vectors]; };
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ITALICS = derive2 { name="ITALICS"; version="2.30.0"; sha256="0bm38swbkqnf6nq17p49bh1lvpdvyz4vqv645awmfb5h7sfkhc3v"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; };
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IVAS = derive2 { name="IVAS"; version="1.2.0"; sha256="05sm8zhjqm3b966s9hc9dmsxajzry60wcz1qbxn989nly270cnqh"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; };
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Icens = derive2 { name="Icens"; version="1.42.0"; sha256="14a2fsddq2vq7b5yaairxg2p3ivrfck1r91sc2izbiyvkqk5qjb4"; depends=[survival]; };
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IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.14.0"; sha256="11rn1b6665b64h3a4mb8qkg5kp5l9ha6aa14f512k7lzs1vcczpm"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; };
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IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.18.2"; sha256="0wl2ybv23z84rlq2szk46kvcdm0bmqy0mjga9n33wz1c04br2bxj"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; };
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IdeoViz = derive2 { name="IdeoViz"; version="1.4.0"; sha256="17rdvqim46q3lwm4c4k1xyayn8x76v9sj34x2xsr7day1r5kssq3"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; };
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Imetagene = derive2 { name="Imetagene"; version="1.0.0"; sha256="1di9nx5ad0wd17byn740azx9yb6hd12dzvlfl8s5iyas4z9qzwya"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; };
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InPAS = derive2 { name="InPAS"; version="1.2.1"; sha256="0vwzm9cf2zzc7pzw2xp7a7jpg9phzcskb6zm6jwx23p005pd8qv3"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; };
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IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.6.0"; sha256="1b7my9ri3kwi4rbdymcnwdjzv88pgdfjf2ax4gls0v4460hwg5az"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; };
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KCsmart = derive2 { name="KCsmart"; version="2.28.0"; sha256="1bkc3ih97g0sr53wi4r0hdi6c46a7iabdsb7qy04mz7a8pa1g5ja"; depends=[BiocGenerics KernSmooth multtest siggenes]; };
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KEGGREST = derive2 { name="KEGGREST"; version="1.10.1"; sha256="05mn2wp5xg5xpwm8wdpzv4xhcrv08qmyqi5i3ssa46nj4yn8zcc4"; depends=[Biostrings httr png]; };
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KEGGgraph = derive2 { name="KEGGgraph"; version="1.28.0"; sha256="03lvm6qjalqwbi9i84b3glwf0kkagl3zh7cxhjd0jn7xzr20iw7q"; depends=[graph XML]; };
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KEGGprofile = derive2 { name="KEGGprofile"; version="1.12.0"; sha256="08yg0vn7d0yyamwj8s9bg9130y1dag34w5j9dhi00x7381jnrxwr"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png TeachingDemos XML]; };
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LBE = derive2 { name="LBE"; version="1.38.0"; sha256="0gsckpx2903pz55mjc8a3g3w4w3q58cly40mnjb82aqjc5vd8zzk"; depends=[]; };
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LEA = derive2 { name="LEA"; version="1.2.0"; sha256="1mq5yhs9gq321ngrfqra3isfjp5isxz00f14ify4h7wjn2w5abnp"; depends=[]; };
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LMGene = derive2 { name="LMGene"; version="2.26.0"; sha256="0mfs8kpirwkv8salg6aacy0hr0zwmmxr7pzh88sxj3x71k2dclzi"; depends=[affy Biobase multtest survival]; };
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LOLA = derive2 { name="LOLA"; version="1.0.0"; sha256="0lr8rzgzimmnwz9q0yyxxpa8prc06rzy1agz4in6r2iqjwpb9dq9"; depends=[data_table GenomicRanges IRanges]; };
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LPE = derive2 { name="LPE"; version="1.44.0"; sha256="16cynjjqzji4ys6k61p9wgrwz0bnvcrqadq32i49ppfyxnf248pd"; depends=[]; };
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LPEadj = derive2 { name="LPEadj"; version="1.30.0"; sha256="0ll9n3wkaink16laj2y98hb0kx5dglz776zlwdfkw54l1fjvvj5h"; depends=[LPE]; };
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LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.20.0"; sha256="1q43harvk7q5wb8yjffhvzs4dxl8h5vp60ngym5vcvapxr8iym3w"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; };
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LedPred = derive2 { name="LedPred"; version="1.2.0"; sha256="0zripgxpy0fr8d02k716frzbrrh1hdp85l7agk58yyhzw086b0bl"; depends=[akima e1071 GenomicRanges irr jsonlite plot3D plyr RCurl ROCR testthat]; };
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LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.24.0"; sha256="0h20asshxybng9apaqlvwfl30db7cwf2nqknwrd52rdh3b2x4025"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; };
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LowMACA = derive2 { name="LowMACA"; version="1.2.0"; sha256="12jm8psg7rnrsxydcqzfgiryy6lk5mxyximfzn7hnqqvxbs3wc55"; depends=[BiocParallel Biostrings cgdsr data_table LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; };
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M3D = derive2 { name="M3D"; version="1.4.0"; sha256="088ghd9r5jr51179cj9hbk1dpj4f9fkrbgyghlq29w2bbgzc57xx"; depends=[BiSeq GenomicRanges IRanges]; };
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MAIT = derive2 { name="MAIT"; version="1.4.0"; sha256="0yhslwqij9b073if2zp7f9w4fcxx02w9qjp2sj29g9gj1xfyij5b"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; };
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MANOR = derive2 { name="MANOR"; version="1.42.0"; sha256="0k2mg4bchjaabbbxhnjgc0j3r10hngc1al06dp7077h1yqrcr9v2"; depends=[GLAD]; };
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MBASED = derive2 { name="MBASED"; version="1.4.0"; sha256="0v56m2cdwq59drqxnpg3cg8cmwkq75wzrscyj7ajy1zp71m4kn4b"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; };
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MBAmethyl = derive2 { name="MBAmethyl"; version="1.4.0"; sha256="0knn0fgrqmddwiyip49gchp5fzz77fb3fndhyddb0xw752nqvw8p"; depends=[]; };
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MBCB = derive2 { name="MBCB"; version="1.24.0"; sha256="1qryzcjf3w138n12amch1zq2nl5nvagqqv422kcladapaq2lsgi2"; depends=[preprocessCore tcltk2]; };
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MCRestimate = derive2 { name="MCRestimate"; version="2.26.0"; sha256="1igfffsgz6m4rl2a5fnkb92r5x4qjr2yl8gaj3ws8478q3aq0bgd"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; };
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MEAL = derive2 { name="MEAL"; version="1.0.3"; sha256="1jrg6vw34hc8cg1ifyihrvya40x3f6ad77vp56wxdizr2wqp6h3q"; depends=[Biobase BiocGenerics DMRcate doParallel GenomicRanges ggplot2 IRanges limma minfi S4Vectors SNPassoc snpStats sva vegan]; };
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MEDIPS = derive2 { name="MEDIPS"; version="1.20.1"; sha256="0p5cg0nak7b6dr6l3j2abpm45dg644gbwl4w50ksqc1ahjksh3ir"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; };
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MEDME = derive2 { name="MEDME"; version="1.30.0"; sha256="0j2zgd9lx3cbbv2vyqb4nd9rk3lxk33az50n8b9sn4cab7yws54x"; depends=[Biostrings drc MASS]; };
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MEIGOR = derive2 { name="MEIGOR"; version="1.4.0"; sha256="1nywi9cndvkabiryrq72vxgrhz9d8jvzjvzhz9i4mx6g8xvphjng"; depends=[CNORode deSolve Rsolnp snowfall]; };
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MGFM = derive2 { name="MGFM"; version="1.4.0"; sha256="1ffmz1cbk0bhswrjkjg1mg3cslmx2k2sxhhggv9s2wavx2s4q3ba"; depends=[annotate AnnotationDbi]; };
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MIMOSA = derive2 { name="MIMOSA"; version="1.8.0"; sha256="1kc7qszpcxp82f56yxa7s1bcs5wblm4ywj5izgdf981qq16d6s2h"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
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MLInterfaces = derive2 { name="MLInterfaces"; version="1.50.0"; sha256="16lf1hmjdmsh9r8qh9042k1rzvl8r39n71f2qs6ca79qcwpb9k6j"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rgl rpart sfsmisc shiny threejs]; };
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MLP = derive2 { name="MLP"; version="1.18.0"; sha256="1g45rnj58bkp7n6paz7713ny0lc6v7lxigqsnvq4w460sg9k060d"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; };
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MLSeq = derive2 { name="MLSeq"; version="1.8.1"; sha256="0s324105s96jjasbbf9yri9bdkcwx8siwyg602fyrfkfh0888d3r"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; };
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MMDiff = derive2 { name="MMDiff"; version="1.10.0"; sha256="0v000a87ciw83xj6p2443k1zs1w98ax38nzaf643wqmb8szwr6vf"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; };
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MPFE = derive2 { name="MPFE"; version="1.6.0"; sha256="1n12bpb8jqddrcpdbbpfxzk4r44kg3p8bg8an5drzbv6rmyhdxwn"; depends=[]; };
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MSGFgui = derive2 { name="MSGFgui"; version="1.4.0"; sha256="0pb9i81pqnz05jrwqh9myz5zchdn8ng5nrsv3cmdg4713yskqpcw"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
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MSGFplus = derive2 { name="MSGFplus"; version="1.4.0"; sha256="1hw40kyhkxm0iy60n3y1cw2k52q5vjl47k4z5x34syq5d14iplva"; depends=[mzID]; };
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MSnID = derive2 { name="MSnID"; version="1.4.0"; sha256="1my0kg8wi7f73sgy8brczkdxvjc2mslv3akk69bqw6j0lk1kaqir"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; };
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MSnbase = derive2 { name="MSnbase"; version="1.18.1"; sha256="09gv73ykvi6fcaxwclfmg99qbqwkxg8sn5b5nnwlyzin3g11fyq6"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
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MSstats = derive2 { name="MSstats"; version="3.2.1"; sha256="1zyxawn4zzfg6xdk2pawd5qdmfp9r98bvryb5qklbyqn0azakina"; depends=[data_table ggplot2 ggrepel gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape reshape2 survival]; };
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MVCClass = derive2 { name="MVCClass"; version="1.44.0"; sha256="04mk9mp6kfjdbb1i9ivj1f2h5hm3nzhzznyc8w2vcihkf48gl89d"; depends=[]; };
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MantelCorr = derive2 { name="MantelCorr"; version="1.40.0"; sha256="00603yxak0c7pif6acccvzkhp0jsw2n22l7awc2v0za25xjwn3mr"; depends=[]; };
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MassArray = derive2 { name="MassArray"; version="1.22.0"; sha256="0z7na1ylvga5c42s0lh5shr1y316nla8rfd6wc9amkabsprfngqm"; depends=[]; };
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MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.36.0"; sha256="0gprvc3fflfxflx0d65sja569lf41rrdlfyggf3b2pvqvd59pyfv"; depends=[waveslim]; };
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MatrixRider = derive2 { name="MatrixRider"; version="1.2.0"; sha256="0ss39c235awrmqbkz3yzjly88dvp79bz4ycdz467rasd45wlvz64"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; };
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MeSHDbi = derive2 { name="MeSHDbi"; version="1.6.0"; sha256="19c0llv894mdx52nqf7flz4bpxid5f6nsg535031prqgd2bdslnq"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; };
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MeSHSim = derive2 { name="MeSHSim"; version="1.2.0"; sha256="1wgc2s1080sm2dn9ny4c1kpbcmbv4gv91h7jmgya9p8lk224aasr"; depends=[RCurl XML]; };
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MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.42.0"; sha256="0x6jlza4ip0zscmmxlmy9w6r6cgpdawpxw00cvyrw4pswzhsaz03"; depends=[]; };
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MergeMaid = derive2 { name="MergeMaid"; version="2.42.0"; sha256="1ajmrcpvzfjk0bkm2v3yklry91w5cxpjhgjr9hfszzldfhh5sfw4"; depends=[Biobase MASS survival]; };
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Metab = derive2 { name="Metab"; version="1.4.1"; sha256="0wi45k7lx7f7y8bfpa4d1lggnkxlwwyjgzw22xyfw9yj40ma5x9g"; depends=[pander svDialogs xcms]; };
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MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.2.0"; sha256="1pykrqvblmxwbxwyps3gn2vm6ch6cn9199g6a1fix2dwj26y66yf"; depends=[Biostrings gplots seqinr stringr]; };
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MethylAid = derive2 { name="MethylAid"; version="1.4.0"; sha256="0k8vl8ijgdvci8j1nkq7d4j4naxgsz5wdac5zk093zzjfrq2xmmg"; depends=[Biobase BiocGenerics BiocParallel FDb_InfiniumMethylation_hg19 ggplot2 gridBase hexbin IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; };
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MethylMix = derive2 { name="MethylMix"; version="1.4.0"; sha256="17f32y50aywvyhfm60rr7dyjq3y56i4bysdzmin5plqlyq0gmx30"; depends=[doParallel foreach optimx RColorBrewer RPMM]; };
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MethylSeekR = derive2 { name="MethylSeekR"; version="1.10.0"; sha256="0aa3p5qmprka7v6v3alhnag6qr853wvcib9vj0nj803saa34hil8"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
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Mfuzz = derive2 { name="Mfuzz"; version="2.30.0"; sha256="02a3xrsd3nzr278zq8j7s9bq89v30v5yxcdmzcf480n1pqw66ayz"; depends=[Biobase e1071 tkWidgets]; };
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MiChip = derive2 { name="MiChip"; version="1.24.0"; sha256="1jqhmrzi87g3fyfy0xbwcbkh5hhr9b1sa3lp9rxlxrijlxv35mb4"; depends=[Biobase]; };
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MiPP = derive2 { name="MiPP"; version="1.42.0"; sha256="07flpzyr9jj50789ap78an6qygb3y9b87dkaami6aadpphp2ggn0"; depends=[Biobase e1071 MASS]; };
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MiRaGE = derive2 { name="MiRaGE"; version="1.12.0"; sha256="0j8qip9sz4ifk7p6a41258lsw26i92qcrl72h4y43l2bln4r74ng"; depends=[AnnotationDbi Biobase BiocGenerics]; };
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MineICA = derive2 { name="MineICA"; version="1.10.0"; sha256="1vdnc25wbbsdx4z9c8x0asar6a50hzwvlkxrgn10dlm96jihmgdf"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
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MinimumDistance = derive2 { name="MinimumDistance"; version="1.14.0"; sha256="0i3iag5a705q33vxqyb7pqpgmc8whpvy96yvidk2gyfh6lwqjsmn"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
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Mirsynergy = derive2 { name="Mirsynergy"; version="1.6.0"; sha256="0wb257fi5wygky6iqaxdhp8n3pxzknv1vy44ay55y0bal1nbkzwa"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; };
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MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.20.0"; sha256="1salsb4askcv6xgzfwcwxkrr8qx7pjzqgljbw3ips2f4n6vqvyzj"; depends=[Biobase lattice limma statmod vsn xtable]; };
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MoPS = derive2 { name="MoPS"; version="1.4.0"; sha256="07bylvhv1wnzj3z2ycw4rb29mlz34sbpksl0sdk47q9f5cjgvlnf"; depends=[Biobase]; };
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MotIV = derive2 { name="MotIV"; version="1.26.0"; sha256="0s26dklw8kav8lz0245as7y9znj4yfiknpmcgrdmm62rq04c11mp"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; };
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MotifDb = derive2 { name="MotifDb"; version="1.12.1"; sha256="0n3kh8k0gbdc571bb45argxwsv6waaalgf9b6rzd3prnizkxzq4q"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; };
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Mulcom = derive2 { name="Mulcom"; version="1.20.0"; sha256="0rf5haxfmf0zs42b9pinngbr4clnm0h707zplmig8dpaq5myski9"; depends=[Biobase fields]; };
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MultiMed = derive2 { name="MultiMed"; version="1.4.0"; sha256="0vd8akfy23rx37b98z9g7x7hz0xjba912kvkwcd9m0k6fv4n2s5g"; depends=[]; };
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NCIgraph = derive2 { name="NCIgraph"; version="1.18.0"; sha256="0ip8ds4jafb7nhfbz81gs9fl83a6b88di1z3nmkh31aqd4awrgim"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; };
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NGScopy = derive2 { name="NGScopy"; version="1.4.0"; sha256="1vs7mi0lb8jcm9yc0jz7rvdnj95fr06cf1jkb9p84pnm9vpn63d6"; depends=[changepoint rbamtools Xmisc]; };
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NOISeq = derive2 { name="NOISeq"; version="2.14.1"; sha256="1z8ka9rbs6q267g3cjmgvdvp5ramk3dnlwry46wswifqihalhf9p"; depends=[Biobase Matrix]; };
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NTW = derive2 { name="NTW"; version="1.20.0"; sha256="1p9hhjzh1mq907czbnjp7gg6n8ip4hzcq7x46bmmxpibi3wy64vp"; depends=[mvtnorm]; };
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NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.0.0"; sha256="11mdy4ms3fvia04njjxj35p1kgbl3i2wzgplzl42yymm61xgcar2"; depends=[Biobase matrixStats]; };
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NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.2.0"; sha256="1cbja0bi4sw3n4f1wkgbvmwh1hr49hhrybqxc6a7f8lvq11s28rf"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; };
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NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.14.0"; sha256="08nhw2ira3amjs9zl134afjqwi0hniq0g3mgmljjp1l0277b8acg"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; };
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NetPathMiner = derive2 { name="NetPathMiner"; version="1.6.0"; sha256="0rvar97f22n2afy185521wqh2scmzgw5fj2pv5dzydn0ybfnpn3j"; depends=[igraph]; };
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NetSAM = derive2 { name="NetSAM"; version="1.10.0"; sha256="001jdmc1qb2gcwkfy98az66b52hcp0cqvjqp0yzj598523983v5i"; depends=[graph igraph seriation]; };
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NormqPCR = derive2 { name="NormqPCR"; version="1.16.0"; sha256="16mm6b656gamvlr3gj5l7957h5fvzz221vggfjvab92khp3p8c16"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
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NuPoP = derive2 { name="NuPoP"; version="1.20.0"; sha256="0wy63x8jdlldb8f28csm611fx7sahvkz1g0gcslp4babsm3368y6"; depends=[]; };
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OCplus = derive2 { name="OCplus"; version="1.44.0"; sha256="05v5fdcgkigisrpfyka8k7caz739ys1ycy8lljqj6ivq94gmi44m"; depends=[akima multtest]; };
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OGSA = derive2 { name="OGSA"; version="1.0.0"; sha256="058lfd60w905jvhq99dsdcvl1q6h9dnwhqdqn942yr54jlkc7fjy"; depends=[Biobase gplots limma]; };
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OLIN = derive2 { name="OLIN"; version="1.48.0"; sha256="1qqvxl8xw02xawxgb82fnxjkss5cy813li4vp7wc70srcxyd1j63"; depends=[limma locfit marray]; };
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OLINgui = derive2 { name="OLINgui"; version="1.44.0"; sha256="0477llp7g2bs7h4756qildpscllk5wdk303gkaaiv5ap6n8s8smj"; depends=[marray OLIN tkWidgets widgetTools]; };
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OSAT = derive2 { name="OSAT"; version="1.18.0"; sha256="063jpwmhsnhi7al88mwcgbnd9azn2z3afxnjd2syf0mv156v86j0"; depends=[]; };
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OTUbase = derive2 { name="OTUbase"; version="1.20.0"; sha256="0h9fgnc0saz8gsx6wgjigs4aiacbw03vzzxfc04wzfcdjgcm731p"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
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OmicCircos = derive2 { name="OmicCircos"; version="1.8.1"; sha256="1xmf4wbij8lczj8jp1vj546gzv6210qcx30dpf4f3zqy083d583v"; depends=[GenomicRanges]; };
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OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.2.0"; sha256="1r4qn2p5fxyi6r9l7zgbga1n5wcy18whcvyx0cwrr7lawbzjn6yg"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
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OncoSimulR = derive2 { name="OncoSimulR"; version="2.0.0"; sha256="1q2kwszqf1ki8whchbx537sv6gah4ibclabhkgycd183rd0jv71r"; depends=[data_table graph gtools igraph Rcpp Rgraphviz]; };
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OperaMate = derive2 { name="OperaMate"; version="1.2.3"; sha256="1zgqf2ywazrxc66l2x8280izrzanan51b8vz5jwy8i7gnrm4gaa0"; depends=[fBasics ggplot2 gProfileR gridExtra pheatmap reshape2 stabledist]; };
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OrderedList = derive2 { name="OrderedList"; version="1.42.0"; sha256="0jk753xfyksv3vcgxd3z7nwh9cnjfdljzma4vc7kkdsblx5mpjyi"; depends=[Biobase twilight]; };
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OrganismDbi = derive2 { name="OrganismDbi"; version="1.12.1"; sha256="1rda35kjh3l5w5dz153x4p6adwm8apkljg5021a1rcs2x58q6z91"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
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Oscope = derive2 { name="Oscope"; version="1.0.0"; sha256="08gyfjkimv8fj54kfnalpy1v72sv8vr0pjxyj52sb0hh0xcj2jqk"; depends=[BiocParallel cluster EBSeq testthat]; };
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OutlierD = derive2 { name="OutlierD"; version="1.34.0"; sha256="19wrakxv833r5jqcrk627kgn6pissna9xdfnhn389a0j50xb02is"; depends=[Biobase quantreg]; };
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PAA = derive2 { name="PAA"; version="1.4.1"; sha256="1g1yv95p9i58c4w3nsg490mn4c5qh4q4lfx1jj1ff7h3w7i6ds9d"; depends=[e1071 gplots limma MASS mRMRe randomForest Rcpp ROCR sva]; };
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PADOG = derive2 { name="PADOG"; version="1.12.0"; sha256="0qswjj0iskdinap0mdgh1vpsjx80hs5g1ikm7r3yrz3784577ji8"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; };
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PANR = derive2 { name="PANR"; version="1.16.0"; sha256="19q7vxhq2kazjf3wxvzl0cvfyd49b00r0daf7vgzjv1smjq1czhq"; depends=[igraph MASS pvclust RedeR]; };
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PAPi = derive2 { name="PAPi"; version="1.10.0"; sha256="0q90yi4s3jln713cpylgan7fzw7c536kw7bqlnkkaw6rjj1k6vvg"; depends=[KEGGREST svDialogs]; };
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PAnnBuilder = derive2 { name="PAnnBuilder"; version="1.34.0"; sha256="086hgqx9svn1pfzcz6affj2p9kvjk5k4viqkmwknlk9smw53l40l"; depends=[AnnotationDbi Biobase DBI RSQLite]; };
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PCpheno = derive2 { name="PCpheno"; version="1.32.0"; sha256="023dkbi3r1bs9wiihx3rcdc1dx5w21pfmk0n3n7zan4k5jkz4rwx"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; };
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PECA = derive2 { name="PECA"; version="1.6.0"; sha256="00arj7ni6vdhsa3j9dvid997hqzw3kbznxgsfrjcda68gl28v8m0"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore]; };
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PGA = derive2 { name="PGA"; version="1.0.0"; sha256="1s4ddjlnxh1waw1sm428lnaq655qfzlmabcjgdm95fi2cg66vs86"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer stringr VariantAnnotation]; };
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PGSEA = derive2 { name="PGSEA"; version="1.44.0"; sha256="0cfz479nlmbal4bs5ah12q6jpp7989xic59rml87i19bcbhz8z26"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; };
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PICS = derive2 { name="PICS"; version="2.14.0"; sha256="01pc4nayj4iyrm18clb66f6f1a7y2w56l2z976xca86fhv6qgp4x"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
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PING = derive2 { name="PING"; version="2.14.0"; sha256="0gpc9x9qn1m1rqdls54yfqlph84937fb3f5mf89yi6zcjh41yhlb"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; };
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PLPE = derive2 { name="PLPE"; version="1.30.0"; sha256="0j6x0c7aigq5n2qwvn0bzcbzi8xqi9szbqfk58jr7ppgaxl1ljyw"; depends=[Biobase LPE MASS]; };
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PREDA = derive2 { name="PREDA"; version="1.16.0"; sha256="050a1a02ck11yklmd104b2hnal9q8g171nyq0qd1v1i2mhg02jyn"; depends=[annotate Biobase lokern multtest]; };
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PROMISE = derive2 { name="PROMISE"; version="1.22.0"; sha256="12virpc3m8ikwkz600bfg1aycxxks6g8km6gd7y01yyxybsqjplq"; depends=[Biobase GSEABase]; };
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PROPER = derive2 { name="PROPER"; version="1.2.0"; sha256="1xhq14wpd9j9g0zzb99mib46miciw6dhp4gvkpdvlfwhh3j8m8fb"; depends=[edgeR]; };
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PROcess = derive2 { name="PROcess"; version="1.46.0"; sha256="0ysp2f2kx5p701ww81ip8n4617qs6rcjfrj62657j143ajz27py3"; depends=[Icens]; };
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PSEA = derive2 { name="PSEA"; version="1.4.0"; sha256="1df2v472s2g4qcylvg9y5gahgjzq0m753j65736c8lc7g2zbpacp"; depends=[Biobase MASS]; };
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PSICQUIC = derive2 { name="PSICQUIC"; version="1.8.3"; sha256="1g3xkbgr3by0gd8ngiavxyy14ixdhrwcf5ka329k3129d816425p"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; };
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PWMEnrich = derive2 { name="PWMEnrich"; version="4.6.0"; sha256="0gvnky8k6v518g2a4lrvb5w7s1m3icckmlvyxcbvxdfyb5krdzh2"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; };
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Path2PPI = derive2 { name="Path2PPI"; version="1.0.0"; sha256="15cf7r1aswc1agdkc7k8dbazscqnyrbfg68ms248gri3qrplkq0k"; depends=[igraph]; };
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PathNet = derive2 { name="PathNet"; version="1.10.0"; sha256="07b6c8ry6a0ni8c88wccv69ksk5c6w3wwwp6cl3gcm7kv7r2qd00"; depends=[]; };
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Pbase = derive2 { name="Pbase"; version="0.10.0"; sha256="02b2vw63gwssy6bz8v6dvfmz2ak5pa7wzz341nrbr3mwv0k27j4q"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; };
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PhenStat = derive2 { name="PhenStat"; version="2.4.0"; sha256="02x8502j7c8jb9xpy01dlr89qwhlakzvn7rhl4mb8qd37lrvc3kf"; depends=[car logistf MASS nlme nortest]; };
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Polyfit = derive2 { name="Polyfit"; version="1.4.0"; sha256="0rhs81hclz59nqirpp9y5n7qmg343s260n1gv8ma3c8j2jicb333"; depends=[DESeq]; };
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Prize = derive2 { name="Prize"; version="1.0.0"; sha256="1a9hvhpa29ns7lhzmdqjlasp6rwrzng8klaw9cz54vdvc7al49wn"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; };
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ProCoNA = derive2 { name="ProCoNA"; version="1.8.0"; sha256="0j0ld484cd98304fncyixi86qnxh72m8s83xxyk8c81kf7lzvhw1"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; };
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Prostar = derive2 { name="Prostar"; version="1.0.1"; sha256="1rnbx41f07c9y6ba7p9lb6wi22kf3w5jg8h8di3grfgyq4dw3n39"; depends=[DAPAR data_table quantmod rhandsontable shiny shinyTree]; };
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ProtGenerics = derive2 { name="ProtGenerics"; version="1.2.1"; sha256="1hrds64ijygmilig3l99aj5cqqp8cr74x1jfs5qfw9xkma0ggz3r"; depends=[BiocGenerics]; };
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ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.0.0"; sha256="1ss1kamy3djmxvr838bkh6jd93br8hql9a3aanqml7fzz3pvdq1p"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR]; };
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Pviz = derive2 { name="Pviz"; version="1.4.0"; sha256="02p4l8svrmh0jh1xlgngbdc0h96m2jw15x1ld05p23acj44sacgh"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
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QDNAseq = derive2 { name="QDNAseq"; version="1.6.1"; sha256="1jbnmvf3i4kimk7s558sbvkb0l6gb8hsbfvxdw93sfk4dwsi5c12"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; };
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QUALIFIER = derive2 { name="QUALIFIER"; version="1.14.1"; sha256="1h87y2q8x4ri6sv7nbppzpqa96m99mijq1739h8cfab5wmi0bcl5"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
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QuartPAC = derive2 { name="QuartPAC"; version="1.2.0"; sha256="0nx3a9jsp2rq61jszm6kgpbqi9m5jkqfvk94npp7nk3qwhfi00j8"; depends=[data_table GraphPAC iPAC SpacePAC]; };
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QuasR = derive2 { name="QuasR"; version="1.10.1"; sha256="1sdk1kh8365bp8w8xl06lhqdw0kprqj4gvwhw46lyiw1r3xapqd5"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
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R3CPET = derive2 { name="R3CPET"; version="1.2.0"; sha256="10ps9l6cc61m32a5b0b0y51sf8ci8drrpk02781p3i23jyamx8gz"; depends=[clues clValid data_table GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; };
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R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.20.0"; sha256="118gdmlqgy6nn55vq7nvyqvlwbg2vca7fkw0gjvb63ymv8lhfm7p"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; };
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RBGL = derive2 { name="RBGL"; version="1.46.0"; sha256="1zl2cvzhrm01hkqvzqrf37bnh0snm49594lk6ydiafn3s31rhk6f"; depends=[graph]; };
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RBM = derive2 { name="RBM"; version="1.2.0"; sha256="148is7ddwj8siik6a6svghnyl3ix8yf6ywnp90fxb8x0c5yknvmm"; depends=[limma marray]; };
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RBioinf = derive2 { name="RBioinf"; version="1.30.0"; sha256="038xqmbsajkcj5s0pjv0jb9lizq555kxabxjj3pgipjbqfjbj0xg"; depends=[graph]; };
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RCASPAR = derive2 { name="RCASPAR"; version="1.16.0"; sha256="0rliirdsd89lzr4ych9r7x90d4nzz1p036cmj8k01lzs6nvckh05"; depends=[]; };
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RCy3 = derive2 { name="RCy3"; version="1.0.1"; sha256="0bqn2k7k1007ih48inmdjnl0pan2q86p9p4c8hkbgv6r2alxc0d1"; depends=[graph httr RCurl RJSONIO]; };
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RCyjs = derive2 { name="RCyjs"; version="1.2.3"; sha256="1z3a80j9wcr2jsv35chqqqc95dcjsmz48hylvc432p2jwy572phn"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; };
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RCytoscape = derive2 { name="RCytoscape"; version="1.20.1"; sha256="1ymbj8xlny9bsbcxyvg9si7v2rlc7bw3sq0424bsfc92l3as0rjj"; depends=[BiocGenerics graph]; };
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RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.8.0"; sha256="1f92a80zksp90wlj2iymdf20hqkbp1aw7mdb7w5r19zckskcrg1m"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; };
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RDRToolbox = derive2 { name="RDRToolbox"; version="1.20.0"; sha256="1an5sz2lcq9n0h0i8s6g9jqaskbi7drwib8a1zwlpim1f399h45d"; depends=[MASS rgl]; };
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REDseq = derive2 { name="REDseq"; version="1.16.0"; sha256="13lglqabk3ij37i469s40gagb57z7mqcmdwahvf60rrgxvhbxkwz"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; };
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RGSEA = derive2 { name="RGSEA"; version="1.4.0"; sha256="1dqw1vppxsr14sr94sz4ca2vacky70r0ingkq8cghsbvwp73i6vp"; depends=[BiocGenerics]; };
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RGalaxy = derive2 { name="RGalaxy"; version="1.14.0"; sha256="1g63kmfywmnjammifjkqiy8cnqvb77d2x4yff8bgz2ib60gyqm14"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; };
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RIPSeeker = derive2 { name="RIPSeeker"; version="1.10.0"; sha256="09pr25pf488vdim3k6mvbvqqyxhl2dfs4y699x8xyhym34c74xcj"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer SummarizedExperiment]; };
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RLMM = derive2 { name="RLMM"; version="1.32.0"; sha256="15hkzfsr3qpyd72m5bf208ivcki1dkk5qigz6dxshqy803ax60ca"; depends=[MASS]; };
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RMassBank = derive2 { name="RMassBank"; version="1.12.0"; sha256="1rsvdai5fhkx9pgj14mm2x1xr4h8l0ppakxp8j3aicih92cvdd55"; depends=[mzR rcdk Rcpp RCurl rjson XML yaml]; };
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RNASeqPower = derive2 { name="RNASeqPower"; version="1.10.0"; sha256="16nhhmww8awf5rp6j8hrmz9riw4gppmvd4a2vlp57sr6y82krlsz"; depends=[]; };
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RNAinteract = derive2 { name="RNAinteract"; version="1.18.0"; sha256="0v7hz20nsc2dkb4xjzdhib2rj8k9zkn2c71rhg46b6hy3jxrm7m1"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; };
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RNAither = derive2 { name="RNAither"; version="2.18.4"; sha256="15kr629g5l6isa4069fibgdh9j5zkmjll5anpigfbmdb85dhwlbc"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; };
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RNAprobR = derive2 { name="RNAprobR"; version="1.2.0"; sha256="017sc7ba5kw55rc74acv3i5i0mg7h5hblaqxy4j2ln6iqm1h38fi"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; };
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ROC = derive2 { name="ROC"; version="1.46.0"; sha256="15m52d3z10nrzh7slc6b7js1dybh0dg4pd6nnjbjkc2m5axra09g"; depends=[]; };
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ROntoTools = derive2 { name="ROntoTools"; version="1.10.0"; sha256="0bsab4glgazf3x2rg96shks4vqkarqpls71699q7v7zaw7ay7hra"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; };
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RPA = derive2 { name="RPA"; version="1.26.0"; sha256="09mjbxxx2ggf3c3v8d2wxvgpp14fmhp7yv9w1vxdj4kbzpdagpz0"; depends=[affy]; };
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RRHO = derive2 { name="RRHO"; version="1.10.0"; sha256="11iarlljr6lrq6nf36pdxf7p54mk6xwsz8ssfsg8zmpcpvb8adgc"; depends=[VennDiagram]; };
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RSVSim = derive2 { name="RSVSim"; version="1.10.0"; sha256="1ipzsgm7p2xf8v3asc6gcwvl6gnrn8nkg45iyl948kgys9izrng3"; depends=[Biostrings GenomicRanges IRanges ShortRead]; };
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RTCA = derive2 { name="RTCA"; version="1.22.0"; sha256="1rwgrac92n7ghk417sj3p80ahlnn8c9nq8af999a825bjbi90qd5"; depends=[Biobase gtools RColorBrewer]; };
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RTCGA = derive2 { name="RTCGA"; version="1.0.2"; sha256="14lxdzrii9xvpjvflqim2kasx2xd5pk9rijpad2pkm8yq5cs662p"; depends=[assertthat data_table knitr magrittr rvest stringi XML xml2]; };
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RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.0.0"; sha256="0bwdh52qsl2bawr8s4q92mrx1wn4yyc4qbag97w469ixlsr7fcx2"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; };
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RTN = derive2 { name="RTN"; version="1.8.4"; sha256="17znp5k4jrxnl3iq5mlljkjzm5lhi5a5pw06gkd081zs6bwhi9v3"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; };
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RTopper = derive2 { name="RTopper"; version="1.16.0"; sha256="0ikhlz9fa21ij9ikira4grc6fahjd8n2fwsdgkxr058zlzyw0c7b"; depends=[Biobase limma multtest]; };
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RUVSeq = derive2 { name="RUVSeq"; version="1.4.0"; sha256="0xqma406k3sd47r830jc00al2xmx3wmfg5q0zk3b29bxiklj5w4f"; depends=[Biobase EDASeq edgeR MASS]; };
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RUVcorr = derive2 { name="RUVcorr"; version="1.2.0"; sha256="1iaja7xcmih63vp9g4km8yx2rrafkybp3azrxw5i28sv1hl7187j"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; };
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RUVnormalize = derive2 { name="RUVnormalize"; version="1.4.1"; sha256="13ksgz1givgy3ws97xa1x8v96ikpia5s9675l3xkz1fzsm3wmbzi"; depends=[Biobase RUVnormalizeData]; };
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RWebServices = derive2 { name="RWebServices"; version="1.34.0"; sha256="05czankzfvgsfrs2am8dkglzcix22s7gc4bgci0a66x8z31dlkx0"; depends=[RCurl SJava TypeInfo]; };
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RamiGO = derive2 { name="RamiGO"; version="1.16.0"; sha256="12mwfcljw323aqpzc4z5hl2h5qy51bpi5z59x4hx8inw3vc3n55y"; depends=[graph gsubfn igraph png RCurl RCytoscape]; };
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RankProd = derive2 { name="RankProd"; version="2.42.0"; sha256="0ma0mmj335v04bx96wssas81hx9apv6gv9y54cgac4n6v1ci9a9y"; depends=[]; };
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RareVariantVis = derive2 { name="RareVariantVis"; version="1.2.0"; sha256="1azfhbb9hpahpglwal4qd8c91zkjhda42ljn2jjd8ylvl4mgzv96"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; };
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Rariant = derive2 { name="Rariant"; version="1.6.1"; sha256="00q303w8gmp7p8s0k10l6w524d1yjjxhwckgg7g34hgvak75dqdg"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; };
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RbcBook1 = derive2 { name="RbcBook1"; version="1.38.0"; sha256="1pg6bg2q9whz4g0483ll3l71w7jiy68xd8l71vgr8zy0nip1kmg1"; depends=[Biobase graph rpart]; };
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Rbowtie = derive2 { name="Rbowtie"; version="1.10.0"; sha256="1pdkircilkk9cnb556jmmany1c1xjg29blrs0knribzn6h6bm76s"; depends=[]; };
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Rcade = derive2 { name="Rcade"; version="1.12.0"; sha256="08q62agkyb810b0hfvs9vb9rh0ls8zrz83558xprijjizrkg9cg2"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; };
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Rchemcpp = derive2 { name="Rchemcpp"; version="2.8.0"; sha256="0zz9s3zvxgs6mpiq085zy20sqajyx1645cz3848h2l0w1w5m6lga"; depends=[ChemmineR Rcpp]; };
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RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.10.0"; sha256="0cmyjyr3dn8df9ss4zhhm6y1lhf68msl5br070x01i8kgh4dagky"; depends=[flowType graph Rgraphviz sfsmisc]; };
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Rcpi = derive2 { name="Rcpi"; version="1.6.0"; sha256="19h9zxkb4zw9c46fvd0yn7bzy03a73glc4yyla0fzrngk1vs2s5q"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; };
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Rdisop = derive2 { name="Rdisop"; version="1.30.0"; sha256="0v9dm982y2f6gd4lxr2c123a4ijsa8sbn6mkcchwlli8hbxxvpcf"; depends=[Rcpp RcppClassic]; };
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ReQON = derive2 { name="ReQON"; version="1.16.0"; sha256="1j79vmhk34argysbjyxcsmfjsplkxq4cn8gprm6min1v08xzryg0"; depends=[rJava Rsamtools seqbias]; };
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ReactomePA = derive2 { name="ReactomePA"; version="1.14.4"; sha256="1dywrigxh29i50k607fi4p33dxjw2dlm5q86i0400l99lp0xj0di"; depends=[AnnotationDbi DOSE graphite igraph reactome_db]; };
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ReadqPCR = derive2 { name="ReadqPCR"; version="1.16.0"; sha256="04d3gam21cia44w7wz1ai8a60igsbjslac25rb7z5i9ijbx8jk9q"; depends=[affy Biobase]; };
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RedeR = derive2 { name="RedeR"; version="1.18.1"; sha256="0arhg8zav0h3ivinnyl6b4z85b4l3w9vlzxiixnwzdmnr2ch78dc"; depends=[igraph pvclust RCurl XML]; };
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RefNet = derive2 { name="RefNet"; version="1.6.1"; sha256="0l0krjjk1jld7z5zy6k3z6m2qkqd86yj92xfck75q3bq3jm96h0j"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; };
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RefPlus = derive2 { name="RefPlus"; version="1.40.0"; sha256="13qlm4smaafx1x78wn959wc1rm4wns7l6qgdmh1lg5khkrrh3x19"; depends=[affy affyPLM Biobase preprocessCore]; };
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Repitools = derive2 { name="Repitools"; version="1.16.0"; sha256="1jsimbrnfzvdydb4s6zvimj58gpxyydyngq2dflacg1gd7msq66a"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; };
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ReportingTools = derive2 { name="ReportingTools"; version="2.10.0"; sha256="1zlxr7z7c3vlkbmpcmw88a9caaf1gwhh8jv31fg2njy60vysb0m0"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; };
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Rgraphviz = derive2 { name="Rgraphviz"; version="2.14.0"; sha256="0lwg57kja3r7ij1d3yp5g3r0zbzn2nannlvsh029sd626yfp6fb6"; depends=[graph]; };
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Rhtslib = derive2 { name="Rhtslib"; version="1.2.1"; sha256="0x7x8sbzjxssnnfa43kh38nlkqz6qvj41xdbgniyp7b6kyyr0na4"; depends=[zlibbioc]; };
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RiboProfiling = derive2 { name="RiboProfiling"; version="1.0.3"; sha256="096lpmrdwbsw71k4qdx9d0zgs83r0ixphkg60p40vgvpmhq1c3dh"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors]; };
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Ringo = derive2 { name="Ringo"; version="1.34.0"; sha256="0r549n840sq9whaz8nk7rz3wardxc8jvwdni4bd5f7zzrhj0ynhl"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; };
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Risa = derive2 { name="Risa"; version="1.12.0"; sha256="0s23fbdk1v1cg0c67vhkz53wava1swjig8fz8jsv8av0pqb0rg17"; depends=[affy Biobase biocViews Rcpp xcms]; };
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Rmagpie = derive2 { name="Rmagpie"; version="1.26.0"; sha256="1iwiy8d5cvrmk6jgwaplx980gzdgxp9k53zjwmzya8bar7386sgs"; depends=[Biobase e1071 kernlab pamr]; };
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RmiR = derive2 { name="RmiR"; version="1.26.0"; sha256="1nnpr5jp5anbqbgyg53qqjhi49bibymc0l3yj6ar5d6csavrympb"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; };
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RnBeads = derive2 { name="RnBeads"; version="1.2.2"; sha256="1nn64lqnzvvlms8m0i3rn5mrp12xxjra8wssabbbnbdg60a1g7i1"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
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RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.2.0"; sha256="11zkq3i8pn9qfs8qynnrlfmr9fdnmqayqmgxzw54fzpj62b0y894"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; };
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Rnits = derive2 { name="Rnits"; version="1.4.0"; sha256="0igqimvync5sz1hsn3m9ijivw1vxi8vjpsdcjzf9dkyqhkand6r3"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
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Roleswitch = derive2 { name="Roleswitch"; version="1.8.0"; sha256="0libkpp9scrbakhzp030bx86f4np6ijn01r8xzn02f5106h23gz7"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; };
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Rolexa = derive2 { name="Rolexa"; version="1.26.0"; sha256="184v27zycmqnj4fpjgrxl3vcxxfxwkbfqdzm6wsyxixm93rmz7v4"; depends=[Biostrings IRanges mclust ShortRead]; };
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RpsiXML = derive2 { name="RpsiXML"; version="2.12.0"; sha256="0zlcr1f5sf98bwxakbmq33kniwlpxcc32z5fz7vqsasyv5vbz1ks"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
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Rqc = derive2 { name="Rqc"; version="1.4.2"; sha256="0kmp69c2hinfh5bn8ka5rsd4fl14gh4xjj24gw5kasjfbhy5l90x"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; };
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Rsamtools = derive2 { name="Rsamtools"; version="1.22.0"; sha256="1yc3nzzms3igjwr4l9yd3wdac95glcs08b4cfp7disyly0wcskjd"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
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Rsubread = derive2 { name="Rsubread"; version="1.20.3"; sha256="0i0dns4392cflajx58x3wy8m6fbh4pb6vyiliisws1cxdq3yilk4"; depends=[]; };
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Rtreemix = derive2 { name="Rtreemix"; version="1.32.0"; sha256="0snj644rc6cyjcswckz88fihd6ynjq3sj7qf733vbvqj8d12dqk8"; depends=[Biobase graph Hmisc]; };
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S4Vectors = derive2 { name="S4Vectors"; version="0.8.11"; sha256="12iibcs63m9iy7f45wgjcqsna2dnqwckphk682389grshz0g4x66"; depends=[BiocGenerics]; };
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SAGx = derive2 { name="SAGx"; version="1.44.0"; sha256="0rrw1y80ybpskwvcdbyqq8m4d17sz07bv9gpa27rvfq2sy4znsk6"; depends=[Biobase multtest]; };
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SANTA = derive2 { name="SANTA"; version="2.8.0"; sha256="1dlc6m8lq9cyvxqrp0gnrfx1ksfl5p2hvgl5n67sag3z40vdhflc"; depends=[igraph Matrix snow]; };
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SBMLR = derive2 { name="SBMLR"; version="1.66.0"; sha256="0xa9s382nd8gpkx2lp02iarjqqs2w4qp6xzg9sy654yg4iyjmnms"; depends=[deSolve XML]; };
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SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.12.1"; sha256="0z5qp738xwwnsiv5bygfyljxld0vw805xl3plh5wrwy9gsxn2c7v"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
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SELEX = derive2 { name="SELEX"; version="1.2.0"; sha256="019142j9x7p38mi3wvzxm138s9cmq8ljkb5i5lk5pj1z8cc3ci0d"; depends=[Biostrings rJava]; };
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SEPA = derive2 { name="SEPA"; version="1.0.0"; sha256="1hvkz3pyp8qkq1mjw9wl426db6n3ay05bx2djkdpvpbai4fjwgvc"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; };
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SGSeq = derive2 { name="SGSeq"; version="1.4.3"; sha256="09x0mw1xil0p3742w031ljrh5ywr1axsakw7j6300v98j87l2ymv"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; };
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SICtools = derive2 { name="SICtools"; version="1.0.0"; sha256="16yzykl4s1b2nkgarxsrgvk6cvjdfla3x3ijjn1yxj22wjdzfg9m"; depends=[Biostrings doMC foreach GenomicRanges IRanges matrixStats Rsamtools stringr]; };
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SIM = derive2 { name="SIM"; version="1.40.0"; sha256="02v2fi0yw1sxj5f41h7lihs96y9crca2srwflpdjif8sx6pk6yvq"; depends=[globaltest quantreg quantsmooth]; };
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SIMAT = derive2 { name="SIMAT"; version="1.2.0"; sha256="1qwird1yqwdh7085d4k7zgy1ld0c6215ks6i3d3d71pwg22agiw4"; depends=[ggplot2 mzR Rcpp reshape2]; };
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SISPA = derive2 { name="SISPA"; version="1.0.0"; sha256="01kf83hlc7qyyxr4dx86m9vc16cydrkw4sajs2ikpn2fnrqkx6z1"; depends=[changepoint data_table ggplot2 GSVA plyr]; };
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SJava = derive2 { name="SJava"; version="0.96.0"; sha256="17qvrd8n0vrn9fn9p31s2bhzf6064hnf89c54hbx3flzki73waaz"; depends=[]; };
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SLGI = derive2 { name="SLGI"; version="1.30.0"; sha256="1pardqmvmi4877q09n3379wq57pyqla53s8gxvygrqny2drb5crj"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; };
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SLqPCR = derive2 { name="SLqPCR"; version="1.36.0"; sha256="02i77a1rrz46sgrji57nm92d6w50wcwdagxa6y2a6rdcjcv2g66n"; depends=[]; };
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SMAP = derive2 { name="SMAP"; version="1.34.0"; sha256="07mdnmirsbz8m5zky169q2mqdn1sdh1nlx8qsgdf8h0n0vcs2h3z"; depends=[]; };
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SNAGEE = derive2 { name="SNAGEE"; version="1.10.0"; sha256="187xcsdpbjdiabzjg3gggnz1rcwgjzj4279i26h879ijs7hli19w"; depends=[SNAGEEdata]; };
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SNPRelate = derive2 { name="SNPRelate"; version="1.4.2"; sha256="0iy4y58bhkr6ig1n2arw7pra29fsrxp10kzf9a479jrn3jdxxb0q"; depends=[gdsfmt]; };
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SNPchip = derive2 { name="SNPchip"; version="2.16.0"; sha256="1fxskvkzn0mfcg2zjs2r2fr0pifrha54a15vbxxcawy4pggf7fdv"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; };
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SNPhood = derive2 { name="SNPhood"; version="1.0.7"; sha256="1kr86xm2w6pmwbglhl97qpxyzsyqzrkzkjav6dm0zqn24f1q9579"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools VariantAnnotation]; };
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SPEM = derive2 { name="SPEM"; version="1.10.0"; sha256="1b6r9x5q06ai6fh99a0qcx3lnjdqip7vhy32i38s16ixw9g94rcf"; depends=[Biobase Rsolnp]; };
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SPIA = derive2 { name="SPIA"; version="2.22.0"; sha256="0103aapq3p6il4acaa9fna1a5iri3fb656r60xg6ljyywcgy55yl"; depends=[KEGGgraph]; };
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SQUADD = derive2 { name="SQUADD"; version="1.20.0"; sha256="1nxf68waqnm9jaj0r8z1499kw5c6l1sykj38wikcc39bsyy23kxm"; depends=[RColorBrewer]; };
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SRAdb = derive2 { name="SRAdb"; version="1.28.0"; sha256="0savk9qi8x2vyrn2f29pzjd14ngczw3qidfggqwksayd2kx4nh1j"; depends=[GEOquery graph RCurl RSQLite]; };
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SSPA = derive2 { name="SSPA"; version="2.10.0"; sha256="1835g6chjrl1kz5zc710jy0lx04b84khk2kx981ga6rmlihn5xyc"; depends=[lattice limma qvalue]; };
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STAN = derive2 { name="STAN"; version="1.4.0"; sha256="0phrznzv3n9nvjbxb172ywxcc6dfjz2gw21w4nzxiwcjaf3kg841"; depends=[Rsolnp]; };
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STATegRa = derive2 { name="STATegRa"; version="1.4.0"; sha256="1nw4r8h8gv8y8a6qhh8gnsdc7pyp3h762ayhgkjy844kmxn316ad"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; };
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STRINGdb = derive2 { name="STRINGdb"; version="1.10.1"; sha256="0wj8rrm7syvgisv6cn7zh81fpg33qbyzacv69d96wdwp8jsspdh2"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
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SVM2CRM = derive2 { name="SVM2CRM"; version="1.2.0"; sha256="06jhyvq3j35skvkf57iqfphypsv43k12i0wybhhvx4wjsdrrhmwq"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; };
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SWATH2stats = derive2 { name="SWATH2stats"; version="1.0.3"; sha256="03p18b0kz33g7jldynxsk561xrrl547m3w7cb2gq766k56fv93m6"; depends=[data_table reshape2]; };
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SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.24.0"; sha256="1bpaz8vzk3iysbcsdky2vcwvkc38m66b4bh1jnxgh6ld318pkllz"; depends=[]; };
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ScISI = derive2 { name="ScISI"; version="1.42.0"; sha256="0bmpl2zaalwxhhc9vj9v3x8ig6hbj4lrbfl2dxmivgsh1hqvbcli"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; };
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SemDist = derive2 { name="SemDist"; version="1.4.0"; sha256="13wazcicjss3ybj20n958qjxk34aylpza4nggk0np8bjs5460i6j"; depends=[annotate AnnotationDbi GO_db]; };
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SeqArray = derive2 { name="SeqArray"; version="1.10.6"; sha256="1x9zf02h1x1sqypf5663hjl6xvq8d0q4h6ls1ndagkaqkrwqhgyd"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
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SeqGSEA = derive2 { name="SeqGSEA"; version="1.10.0"; sha256="02jbxncy2y2p7xg33xpv4hwcd8344qsfy3ibb9d4c8kf9b5wj9f1"; depends=[Biobase biomaRt DESeq doParallel]; };
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SeqVarTools = derive2 { name="SeqVarTools"; version="1.8.1"; sha256="1sgkcqhqhrxzipwcwn5kvhsns08dh1fdpd8xzhmzylsr5yb9cbsy"; depends=[Biobase gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray stringr VariantAnnotation]; };
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ShortRead = derive2 { name="ShortRead"; version="1.28.0"; sha256="00awzvdpd21shixcx03mjqz8bqww2z96ffkna2gpqh3f7d2pmhii"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
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SigCheck = derive2 { name="SigCheck"; version="2.2.1"; sha256="001i9izz5g9p8ymxicx884gsqc53jq6pck4al3s2i0y0mhv9dw8m"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; };
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SigFuge = derive2 { name="SigFuge"; version="1.8.0"; sha256="1bs55pc5z3x22708pdr551rxvq66i2xyi9l9j1i6vnl7h1433iy3"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
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SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.8.0"; sha256="1cyqlzb6vykxndslwvmj9sn7hzrq3lqjwsmvkvl7ivfigrslg142"; depends=[Biobase limma mclust Ringo]; };
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SomatiCA = derive2 { name="SomatiCA"; version="1.14.0"; sha256="0a6l05zvc8jkckaznflrkknm144179hp77ck0pwrcp2065bglb1z"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; };
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SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.6.0"; sha256="14w5p7vv8nyxmbfc9yxsc21xrzi8rfylw0dcpkv0p1l431qc8icg"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; };
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SpacePAC = derive2 { name="SpacePAC"; version="1.8.0"; sha256="11szjavnv8b3sdqdzda3vsx3rbzmnzdimm4b37lm3rfqzrs14qhc"; depends=[iPAC]; };
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SpeCond = derive2 { name="SpeCond"; version="1.24.0"; sha256="1a9nxq2zdv1qvqk5byi8nrazkgqkdna8i4h2vibng33cjzjvxrdv"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
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SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.10.0"; sha256="0p43f313qhhrpvkdsr7qzp825am6yv0cg1ypbw0kfbkgsysi7z5v"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
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Starr = derive2 { name="Starr"; version="1.26.0"; sha256="0ra9x1kzr0r2wa1ihapzmldq0fdr91rfbbglmzjnq92wrw6rvkd2"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; };
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Streamer = derive2 { name="Streamer"; version="1.16.0"; sha256="09bjwj9ynhjl1lgwh4444xjs4l1vj8sar5d1ph1b12fl48rb62zm"; depends=[BiocGenerics graph RBGL]; };
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SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.0.2"; sha256="1gpmh1mi70m5k5qnyjs1h0qn8ajrzalzic7k3762xchxsmmdvxn4"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
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Sushi = derive2 { name="Sushi"; version="1.8.0"; sha256="1ldvv1028chnh8ng85534k924cgdmzqb3i18z6xpacsjgg5k7s7l"; depends=[biomaRt zoo]; };
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SwimR = derive2 { name="SwimR"; version="1.8.0"; sha256="0vwjrpm4qbhc8afv0zj0al3rv06izp649kz8h3pb1yixw4bwrxg8"; depends=[gplots heatmap_plus R2HTML signal]; };
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TCC = derive2 { name="TCC"; version="1.10.0"; sha256="1r56h2l2jcva4fi6yzch4rwllyp5hwvy93dn1rna9jjf8q5m4nkp"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
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TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="1.0.9"; sha256="12rg49xqfbgh1djirlj9bs29c6iksjs7szrd62lwpi9ljdn1sqsc"; depends=[affy Biobase BiocGenerics biomaRt coin ConsensusClusterPlus data_table devtools dnet doParallel downloader dplyr EDASeq edgeR genefilter GenomicFeatures GenomicRanges GGally ggplot2 gplots heatmap_plus igraph IRanges limma plyr RColorBrewer RCurl rjson rvest S4Vectors scales stringr SummarizedExperiment supraHex survival TxDb_Hsapiens_UCSC_hg19_knownGene xlsx XML xml2 xtable]; };
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TDARACNE = derive2 { name="TDARACNE"; version="1.20.0"; sha256="0jf89s2bnz8psd7vqh3l29ch5mb2ilky2jmv8db4kcqaw9157kn8"; depends=[Biobase GenKern Rgraphviz]; };
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TEQC = derive2 { name="TEQC"; version="3.10.0"; sha256="1kpibmaqqrdshbrw94080zxjlscfssddzjaqlx3l9zvhrw9sbl38"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; };
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TFBSTools = derive2 { name="TFBSTools"; version="1.8.2"; sha256="1fnfm3masx093p879ak193v2nf62rlncq1j6wbjkhq61imyr02pm"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; };
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TIN = derive2 { name="TIN"; version="1.2.0"; sha256="051v518zyqz2lrp886hqapchngqxj2kz58dchjvafgaa2l5zyy9z"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; };
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TPP = derive2 { name="TPP"; version="2.0.3"; sha256="152hay6h8nwjp2yfqz8wl7y6jv32h6aq9kn58vsyrjaay6kd9v2g"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr RColorBrewer RCurl reshape2 VennDiagram VGAM]; };
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TRONCO = derive2 { name="TRONCO"; version="2.2.0"; sha256="1ljciqm93iqr184pyyw1rdqdqllkk548zp68zpcvv91g7kdgf7ii"; depends=[bnlearn cgdsr doParallel ggplot2 gridExtra gtable igraph RColorBrewer reshape2 Rgraphviz scales xtable]; };
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TSCAN = derive2 { name="TSCAN"; version="1.8.0"; sha256="1cp723wp4g4g42l25p313lyc7hv4lp8fg95k60kpnqql356b0c7p"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; };
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TSSi = derive2 { name="TSSi"; version="1.16.0"; sha256="16cry226v35mjgw1w1sk4kgi8cjqwkls563y088mfz6fygfmg4ld"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; };
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TarSeqQC = derive2 { name="TarSeqQC"; version="1.0.2"; sha256="1k9wf8q82yx6ygvxl9vaj8ypwaljxjv76jk8xwf994hxn1sjx7v4"; depends=[BiocGenerics BiocParallel cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; };
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TargetScore = derive2 { name="TargetScore"; version="1.8.0"; sha256="184n05p2c9g5yc53sx29dxq1pqa3appb2s7wr6n0271c08lkqc11"; depends=[Matrix pracma]; };
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TargetSearch = derive2 { name="TargetSearch"; version="1.26.0"; sha256="1kk8qnrp8x4iijmkbqrvpyjvf7z8yd1jwp6mgjlqba5l09n65g29"; depends=[]; };
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TitanCNA = derive2 { name="TitanCNA"; version="1.8.0"; sha256="06i4gbpw356m9qxl5kj0xgnr6kvcl85qnq1z6aqjhy2x5qdiw92n"; depends=[foreach GenomeInfoDb IRanges Rsamtools]; };
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ToPASeq = derive2 { name="ToPASeq"; version="1.4.0"; sha256="18fwifmih7x4wr7s3nr8qwvxbp0a33qj39sfwkvhr97jqdggb78j"; depends=[AnnotationDbi Biobase clipper DESeq DESeq2 doParallel edgeR fields GenomicRanges graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz TeachingDemos]; };
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TransView = derive2 { name="TransView"; version="1.14.0"; sha256="02as66pzhgls2papji5mqpaczvdfpi6af0mafip8i9hj06z41wci"; depends=[GenomicRanges gplots IRanges Rsamtools zlibbioc]; };
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TurboNorm = derive2 { name="TurboNorm"; version="1.18.0"; sha256="145fb32c5zi7rhnqxad6nq1vx61vc1f28qjxvnccxxb2ia3b8jcd"; depends=[affy convert lattice limma marray]; };
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TypeInfo = derive2 { name="TypeInfo"; version="1.36.0"; sha256="0f0cllsf0pw2bgvq9fhfksqsxb2820js5y125vhcr0ns5kcvi07y"; depends=[]; };
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UNDO = derive2 { name="UNDO"; version="1.12.0"; sha256="1qz9md9j8jhrgl7iap6im4y08nwnydzgxpanpnpsaad1irrlgcaq"; depends=[Biobase BiocGenerics boot MASS nnls]; };
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UniProt_ws = derive2 { name="UniProt.ws"; version="2.10.4"; sha256="0wx5jd45b69id7ffhyc8py15kw8nl0ii0j528xfw7m2x1xzydn6w"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
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VanillaICE = derive2 { name="VanillaICE"; version="1.32.2"; sha256="0qbj7rqhwmyz7dgljx6f9viy3gxnb2hnmnp8pnrj454l2hn30yj6"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
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VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.16.4"; sha256="1z42j3p9b8h725inq8n0230llsdbav3gwcxy1nliypzfkxbzahsb"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
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VariantFiltering = derive2 { name="VariantFiltering"; version="1.6.20"; sha256="1bfp9x4njgmzqc17c2mv5s9lvrzymjr2rjyhng5d8sq2ms7da9kp"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
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VariantTools = derive2 { name="VariantTools"; version="1.12.0"; sha256="0c2sh4fda4gjxazxzd694a5cqj57mpa7f6hvafn6k40iz816x22f"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
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Vega = derive2 { name="Vega"; version="1.18.0"; sha256="0f7rzzckd69xbnism0v7jl0dly55lwj30nla7yj88qqalnb7ajzs"; depends=[]; };
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VegaMC = derive2 { name="VegaMC"; version="3.8.0"; sha256="004zx8hihj503g5fiq5njk09fns6ra7qvzbzb44q2dpd0n02ifqc"; depends=[Biobase biomaRt genoset]; };
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XBSeq = derive2 { name="XBSeq"; version="1.0.2"; sha256="01h3hj4mm7dr16vwbra5iazrgar9nbh2gs2gklyx0wqjfzm3gj49"; depends=[Biobase Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma]; };
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XDE = derive2 { name="XDE"; version="2.16.0"; sha256="0zwp1vqjp3bfxvnkik9k57djnyf29qm57wlldv3zgk65lqxrdm5n"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; };
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XVector = derive2 { name="XVector"; version="0.10.0"; sha256="0havwyr6xqk7w0rmbwfj9jq1djz7wzdz7w39adhklwzwz9l4ih3a"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; };
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|
a4 = derive2 { name="a4"; version="1.18.0"; sha256="07969ixxf20i2xh8c29s6qgghk7qndlc8b30w9ydq5yfd8v1wdys"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
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a4Base = derive2 { name="a4Base"; version="1.18.0"; sha256="1xqdkax03yqnzzyys3zdzndgzp5z52zpvbllqnnlhpf7j0wgqms4"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; };
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|
a4Classif = derive2 { name="a4Classif"; version="1.18.0"; sha256="1bci0b09h5622xn195mrf3s2h7mngjvnx7h5z4smykja7fxn839p"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; };
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|
a4Core = derive2 { name="a4Core"; version="1.18.0"; sha256="0zchs5rii0215x6vk3ma210l1j9m5hlmpfs973h3lia7qb2amjkp"; depends=[Biobase glmnet]; };
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|
a4Preproc = derive2 { name="a4Preproc"; version="1.18.0"; sha256="1hil6m4mqjw6ppn13ljpji1vdinsc6lsibknm974ykjjh1nkx9sx"; depends=[AnnotationDbi]; };
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|
a4Reporting = derive2 { name="a4Reporting"; version="1.18.0"; sha256="156l5qrhwlsr3vvxwpxzkgajb6pcz0ilfm4dw4jinm1kyy3k7fkr"; depends=[annaffy xtable]; };
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|
aCGH = derive2 { name="aCGH"; version="1.48.0"; sha256="0pch06jwwdn6s6cphrn4qn0syc47crliw9s5ii3dm03nh4z6p668"; depends=[Biobase cluster multtest survival]; };
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|
acde = derive2 { name="acde"; version="1.0.0"; sha256="039dy5ssrnf9i8ahjfmf18f3z8vk2x61zkx3snm27mr0vi7nw84n"; depends=[boot]; };
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|
adSplit = derive2 { name="adSplit"; version="1.40.0"; sha256="1djrgfspgi5aijpplqcq61mc4sbnfjj3rk1w3q714y2qazm0675i"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; };
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|
affxparser = derive2 { name="affxparser"; version="1.42.0"; sha256="13asms378wid2kw0p2qz6q3bq6didpgkv58sbl6f8amcy5yxvkf9"; depends=[]; };
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affy = derive2 { name="affy"; version="1.48.0"; sha256="1k26qw2iirhsgfmkii49azcfki5hk9lpz6v9glayq78j3rspn1sk"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; };
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|
affyContam = derive2 { name="affyContam"; version="1.28.0"; sha256="04xq22z965pdh5sy5lgfh2asqjxydm4mzgkz6wqk479xfqdhny5k"; depends=[affy affydata Biobase]; };
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|
affyILM = derive2 { name="affyILM"; version="1.22.0"; sha256="0a51ynrzhb2w2gkgnnnyi36xljmkjkw954541ah82x5hq14aj0wc"; depends=[affxparser affy Biobase gcrma]; };
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|
affyPLM = derive2 { name="affyPLM"; version="1.46.0"; sha256="19ci6vc899j39s2w48f64wy9yl5ls8xmxv7gmdwk4dmp2xm6ys2h"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; };
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|
affyPara = derive2 { name="affyPara"; version="1.30.0"; sha256="14g7xrzsqqsr2h20nv000dd3v71wq18bq78r345w29fs53kipxxd"; depends=[affy affyio aplpack snow vsn]; };
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|
affyQCReport = derive2 { name="affyQCReport"; version="1.48.0"; sha256="0cw6z8idar5qa9y3svrm5fdimdamb2xjjj59d107h2in7bvgni7j"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; };
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|
affycomp = derive2 { name="affycomp"; version="1.46.0"; sha256="0irzcp3b070b4hm0x2cn8fxm9rn1nlgspjl3la37v4jpmvzldi90"; depends=[Biobase]; };
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|
affycoretools = derive2 { name="affycoretools"; version="1.42.0"; sha256="0b2wsxd293p8l7q6gci6gnqb0vw4r52mixrwz2af8cj6gs28l3vc"; depends=[affy AnnotationDbi Biobase gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools xtable]; };
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|
affyio = derive2 { name="affyio"; version="1.40.0"; sha256="0xza3c9b5a3ibwif7dl92gcj44yv56m9mw7fv00ldx2pygw20nyv"; depends=[zlibbioc]; };
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|
affylmGUI = derive2 { name="affylmGUI"; version="1.44.0"; sha256="0gs6yc9xfjcf9jp1kg1vc4qrxs9vjm1ddhw3x3v87ywmba03xivw"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
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|
affypdnn = derive2 { name="affypdnn"; version="1.44.0"; sha256="1av7a8w86wcslbl3q2zbnga8rww3n7dmwdywq4fm86pbmwh1jz9v"; depends=[affy]; };
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|
agilp = derive2 { name="agilp"; version="3.2.0"; sha256="1xfa6f78410fdggsp9mlj4102i3rzcxp78n37bkprk4sib3dvmgq"; depends=[]; };
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|
alsace = derive2 { name="alsace"; version="1.6.0"; sha256="1vrwi2rkccgiwgshz5rxyr55dl7awbh1drbhhsrbpjsbzxwmiv4a"; depends=[ALS ptw]; };
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|
altcdfenvs = derive2 { name="altcdfenvs"; version="2.32.0"; sha256="1sb516qazxvad2vayd7sai1vg6vq9g7vjy4cyx6c0mqw7sl0pagl"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv]; };
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|
ampliQueso = derive2 { name="ampliQueso"; version="1.8.0"; sha256="0v21y2nd0qwnag0n6h0krr9c0vpv6ig89d0jsi58x3pi5m0mypip"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; };
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|
annaffy = derive2 { name="annaffy"; version="1.42.0"; sha256="1fygm19y0ixh5ir7pldx26xck3w9pz1r26ddkj6ffnp4bljd35lk"; depends=[AnnotationDbi Biobase GO_db KEGG_db]; };
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|
annmap = derive2 { name="annmap"; version="1.12.0"; sha256="12ixjb9bg49wdzjl0dpxl7lv7yj63fzsjgw2pqjwcimvgamk0vdw"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; };
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|
annotate = derive2 { name="annotate"; version="1.48.0"; sha256="1b9fm7b5j2vknf5bm1dj17g6wb3smzq8s02dhx4mlqnpif1av6dk"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; };
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|
annotationTools = derive2 { name="annotationTools"; version="1.44.0"; sha256="0qqkvibnz9j8p0007zahcc07y2avgcrbsxpj5hsdn4q4qs4igjxa"; depends=[Biobase]; };
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anota = derive2 { name="anota"; version="1.18.0"; sha256="0nqshv23gz2q8mqmakw0blbrynbxp2s09i120yhci4qrvay5in7w"; depends=[multtest qvalue]; };
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|
antiProfiles = derive2 { name="antiProfiles"; version="1.10.0"; sha256="0a707qd525265am6sc8l1k9161cjm8vblkgyzmvgy14zdw4pk479"; depends=[locfit matrixStats]; };
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|
apComplex = derive2 { name="apComplex"; version="2.36.0"; sha256="0y84hiyzc5i7l2k1nfjfkq5gfll8nli1bqci5jl13207zhhc8jnq"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; };
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|
aroma_light = derive2 { name="aroma.light"; version="3.0.0"; sha256="1mdncg64h9d7ppg626q42xyimz1s6arj5774hxhc06hq2isb5isi"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
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|
arrayMvout = derive2 { name="arrayMvout"; version="1.28.0"; sha256="09jvfpzc1hz07rbsgkxcwiib6ihipq75k9w95bv4fdgd9i3jz4yb"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; };
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|
arrayQuality = derive2 { name="arrayQuality"; version="1.48.0"; sha256="0cqmbf47rxa2d3is999abwk7j4kakwlb7fhxv0qw8x2j2r33vsrl"; depends=[gridBase hexbin limma marray RColorBrewer]; };
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|
arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.26.1"; sha256="0wqxlpppysl9kwmbppnvl78rr7f8z9787yfmr02grqrly3ag83fl"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; };
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|
attract = derive2 { name="attract"; version="1.22.0"; sha256="09nizaqjnsqkxkyiyp0amyc04z2yf23gp3wqf4y1jy5x9y1kkyqz"; depends=[AnnotationDbi Biobase cluster GOstats KEGG_db limma]; };
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|
ballgown = derive2 { name="ballgown"; version="2.2.0"; sha256="12j7y2ldnbawqyfxaybb1a9ndylvw09n0d3p001wd1inqnml4xns"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
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|
bamsignals = derive2 { name="bamsignals"; version="1.2.0"; sha256="11yix7rzk54zy1mh49d96kvz6ka8rlb66whb6mdkd5lyx32w8lwf"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
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|
baySeq = derive2 { name="baySeq"; version="2.4.1"; sha256="0q3gfdg9l1ipz67bcjaly6fl4pfgwd95cy2hpk4sck59lknh1jm4"; depends=[abind GenomicRanges perm]; };
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|
beadarray = derive2 { name="beadarray"; version="2.20.1"; sha256="1kgabdnq20i5p0yyim0m2vcp3lkn39fzlghahj9nrvrl9i4n3gyn"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
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|
beadarraySNP = derive2 { name="beadarraySNP"; version="1.36.0"; sha256="1dj5zi9lkyq5lgrcmr08cjdv3ysfa6p9zc8jza8mm6vy14qsl5ah"; depends=[Biobase quantsmooth]; };
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|
betr = derive2 { name="betr"; version="1.26.0"; sha256="1rs2xajrac3a4sk88i7zq3v849969iw0k8wmpbc0ihw9m4ljb0sx"; depends=[Biobase limma mvtnorm]; };
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|
bgafun = derive2 { name="bgafun"; version="1.32.0"; sha256="1wakjjdcgzl9snsa9i1f7kk0ppwiccxmznd93yawvjk74gqwnkp3"; depends=[ade4 made4 seqinr]; };
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|
bgx = derive2 { name="bgx"; version="1.36.0"; sha256="1x0i4llp6yrfybp7lwqwc7kb1s12dl8a0nwymhjd3fkfv5lslfbx"; depends=[affy Biobase gcrma]; };
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|
bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.14.2"; sha256="05ksk3phvh4wc3vgfj5bl1jfxhndia90bkq9s91wfjzcfkrd41q8"; depends=[bigmemory Biobase]; };
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|
bioDist = derive2 { name="bioDist"; version="1.42.0"; sha256="0l5f8yj76sdx7c2zf50h395a4hbqnycnzx5iw3by4rh45xs6pcxj"; depends=[Biobase KernSmooth]; };
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|
bioassayR = derive2 { name="bioassayR"; version="1.8.25"; sha256="0fnqdkzpyk6zr5s2yb2sr5gp4vaga0qrdxcffcri39wvzpfny4h0"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; };
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|
biobroom = derive2 { name="biobroom"; version="1.2.0"; sha256="15v4s9cdvl4n5sx0n2sskhmq9xvs2cdrxxd7y4l59jgg421fzg7i"; depends=[Biobase broom dplyr tidyr]; };
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|
biocGraph = derive2 { name="biocGraph"; version="1.32.0"; sha256="0sdnysj0dds74a7jb9qrpkix34d8ray5sp4v6c0kwzcqvax47a1s"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
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|
biocViews = derive2 { name="biocViews"; version="1.38.1"; sha256="1ydgxnzkmdfydj6x1pi46qaf8l0nlvw9ycx91zwylwbpz37mss49"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; };
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|
biomaRt = derive2 { name="biomaRt"; version="2.26.1"; sha256="1s709055abj2gd35g6nnk5d2ai5ii09iir270l2xika6pi62gj3f"; depends=[AnnotationDbi RCurl XML]; };
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|
biomvRCNS = derive2 { name="biomvRCNS"; version="1.10.0"; sha256="1vma189z83hvq90g6vaaw87znpk7srl2s1vikicah40s72awywm6"; depends=[GenomicRanges Gviz IRanges mvtnorm]; };
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|
biosvd = derive2 { name="biosvd"; version="2.6.0"; sha256="0mjkan7drib9v49dk3rnrkydm1dxfqimk5gk4jm9qv8kdfcjk0zh"; depends=[Biobase BiocGenerics NMF]; };
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|
biovizBase = derive2 { name="biovizBase"; version="1.18.0"; sha256="1lp89grxfgkhc9h5jmqs2nr9gr8321nyzwimrszls9dcc787xf00"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
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|
birta = derive2 { name="birta"; version="1.14.0"; sha256="1pszpvmvjp1r0bwj7w9ws0y8xmb3yfmq5gifj9jwvgw2p7y718zr"; depends=[Biobase limma MASS]; };
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|
birte = derive2 { name="birte"; version="1.6.1"; sha256="08jkjlkjswz3x4sxw80xr9ck6277ag1gzv5y1dxh7aa6i644w48p"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; };
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|
blima = derive2 { name="blima"; version="1.4.0"; sha256="1mv153f42x0pjva03gw8b064qmf2558p82xqzvxqycyn7ry3riyz"; depends=[beadarray Biobase BiocGenerics]; };
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|
bridge = derive2 { name="bridge"; version="1.34.0"; sha256="08lfbczaj7hkgqfsm060z56anx1yvsfwknzw40gq919k0zm9vfcf"; depends=[rama]; };
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|
bsseq = derive2 { name="bsseq"; version="1.6.0"; sha256="1bz3b79iiqz251nq54lybxd9bfyzm44p1dbb3nxmjdnf2n1gxs5w"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats R_utils S4Vectors scales SummarizedExperiment]; };
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|
bumphunter = derive2 { name="bumphunter"; version="1.10.0"; sha256="086rin3gzzxf0lin5fymmsws1k7jhsy4psrkrcpajq09b2qy2s6b"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
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|
caOmicsV = derive2 { name="caOmicsV"; version="1.0.0"; sha256="0162h17szpr98g4lgz5nypcrslk4103hdn5qdxfxv6frssn9l9g3"; depends=[bc3net igraph]; };
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|
canceR = derive2 { name="canceR"; version="1.2.0"; sha256="1a9vd2mvz22ajgcxw0k57965gnx91lf7ki6cdc5gsqcfib7xj9n5"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
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|
cancerclass = derive2 { name="cancerclass"; version="1.14.0"; sha256="0sgiy31h24wlz2q54ssygbdvikzlp8sqf4knkfxc7178a2aq41p4"; depends=[binom Biobase]; };
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|
casper = derive2 { name="casper"; version="2.4.0"; sha256="19wx4h2pgvi3kdcr28spagjg9qy4g2n5pspv8jn7s9crydihq1v9"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; };
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categoryCompare = derive2 { name="categoryCompare"; version="1.14.0"; sha256="12gqbmkh5rpbp2nqn8j1mhss3v67jiphqxw0cfgb97y6hh7bcfg6"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; };
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ccrepe = derive2 { name="ccrepe"; version="1.6.0"; sha256="1h96ga660yp1bd20f5ykywybhiwzxrll2p0shkk7wqbn1x7rz1wj"; depends=[infotheo]; };
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cellGrowth = derive2 { name="cellGrowth"; version="1.14.0"; sha256="0d40kll2rkzijyk0d0xb9rzyck5r0hkybv0j1ba72g9kk2mdmz7z"; depends=[lattice locfit]; };
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cellHTS = derive2 { name="cellHTS"; version="1.40.1"; sha256="1pfvndkcmnq1jawijl7yd46jj92d6xlzhv717sd03a6skk11hwwi"; depends=[Biobase genefilter prada RColorBrewer]; };
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cellHTS2 = derive2 { name="cellHTS2"; version="2.34.1"; sha256="068lqpxhy04fhpma8cbd79jwg0cifvg8qhav5a4p22dgmalvajw1"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; };
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cghMCR = derive2 { name="cghMCR"; version="1.28.0"; sha256="02a5a2aj35n3y34gv1j6mk3ahm27i10ahj1msbzp62w8ph9lnasx"; depends=[BiocGenerics CNTools DNAcopy limma]; };
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|
charm = derive2 { name="charm"; version="2.16.0"; sha256="14nlmii9rqgl6y0fk0gxk11dnjr33mavchp0iban0cr0hn44inm0"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; };
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chimera = derive2 { name="chimera"; version="1.12.0"; sha256="11arbg6c76rx4zyylp6ga8ygx8890h0pkg4ciwhy4xc8x1smmq7r"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; };
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chipenrich = derive2 { name="chipenrich"; version="1.8.0"; sha256="0xzh3nrw62ars7xnnj9qkdsg9yaq1q3xx63l1bi91lxbfih7k9wr"; depends=[chipenrich_data GenomicRanges IRanges lattice latticeExtra mgcv plyr rms stringr]; };
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chipseq = derive2 { name="chipseq"; version="1.20.0"; sha256="1j3kh5alahrqfp0sxkz9b9v8fm8p5gm3nyw1nbcj20ajiapi1gnp"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; };
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chopsticks = derive2 { name="chopsticks"; version="1.34.0"; sha256="112d4r6ns916yjxzaakghwvbin4cadijpxanm6qs08lyap5imz4s"; depends=[survival]; };
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chroGPS = derive2 { name="chroGPS"; version="1.14.0"; sha256="0i0hrf38sjsay6r6zh69cy6xki17cjw427szq4h7770jlphiq8n1"; depends=[Biobase changepoint cluster DPpackage ICSNP IRanges MASS]; };
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chromDraw = derive2 { name="chromDraw"; version="1.2.0"; sha256="04zcx2y8x4s3rmfljxgm4h7p7gjrhfgqfhyx6h9f96l734l4f8hs"; depends=[GenomicRanges Rcpp]; };
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cisPath = derive2 { name="cisPath"; version="1.10.0"; sha256="0wqbmqpm6qbrwfnl0s4dn569s74x8g9501ckx0h2g38w961z36k3"; depends=[]; };
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cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.8.0"; sha256="1ck58mxnx4q1y8wdi8mbp8ijbg30zmfbhp5ldp09zq2m0j746183"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; };
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cleaver = derive2 { name="cleaver"; version="1.8.0"; sha256="057nvg1cf0prbwarqwv53r651pc1i5sjj6x9nlnshxrgjrwa47ff"; depends=[Biostrings IRanges S4Vectors]; };
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|
clippda = derive2 { name="clippda"; version="1.20.0"; sha256="1d76air1vf29b9bmycak9fx5silkx9d8k6cpding6pw50d63wcb1"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
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clipper = derive2 { name="clipper"; version="1.10.0"; sha256="1dyaazkwrrh6s3f2a0yj3i92jg16azf92az9lsjy3dbrwi8zhi7l"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
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clonotypeR = derive2 { name="clonotypeR"; version="1.8.0"; sha256="1fj00hrxijkn002ixa7kn07jq94mlsgz99xr3sapzg0jqacgp9q0"; depends=[]; };
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clst = derive2 { name="clst"; version="1.18.0"; sha256="0zg3cdd8j46lm750q0ckin42pmvj0hddl1j2j4lh7x50gvqwyjyz"; depends=[lattice ROC]; };
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|
clstutils = derive2 { name="clstutils"; version="1.18.0"; sha256="169pzadyhszaxc8r7z1qysmcsijp2x5pw9bizbkkw7i92r8gf4n7"; depends=[ape clst lattice rjson RSQLite]; };
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|
clusterProfiler = derive2 { name="clusterProfiler"; version="2.4.3"; sha256="0fhi1dm8xifz5wzg756y12980a46cqk3mn32i7rg60f0iy2ax0s0"; depends=[AnnotationDbi DOSE ggplot2 GO_db GOSemSim KEGGREST magrittr plyr qvalue topGO]; };
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|
clusterStab = derive2 { name="clusterStab"; version="1.42.0"; sha256="162kq03vs5d3rnmh9kh5djal6vgyr3pzmihjgq50dp04b89ha2d8"; depends=[Biobase]; };
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cn_farms = derive2 { name="cn.farms"; version="1.18.0"; sha256="0d4xwdzccs5wk52ifqryj3cp60vf4yga6ddhs97p0znafh4gfsjv"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
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|
cn_mops = derive2 { name="cn.mops"; version="1.16.2"; sha256="0c325s454rjiiyydf82vg72a7rfkj36s1dxbib42qvp1pc35rmj3"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
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cnvGSA = derive2 { name="cnvGSA"; version="1.14.0"; sha256="1kw5161fnlc7b1b03a4kpqz4hlrknyj8dlm8wffjj1d45g1rpvwd"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
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coGPS = derive2 { name="coGPS"; version="1.14.0"; sha256="1bylnhcvbrimjld5nar42kr577lzw97d2f4bibrbqysp332wi1iz"; depends=[]; };
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coMET = derive2 { name="coMET"; version="1.2.0"; sha256="0nsz6ci6kcnanm465420sicbp84w2rg58j1550jhnrn4cx4pxm4j"; depends=[biomaRt colortools GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; };
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|
coRNAi = derive2 { name="coRNAi"; version="1.20.0"; sha256="05jv85jbb5lz0x0cmg52sn6gnsscyq939yyk6ll9061bx51as7cv"; depends=[cellHTS2 gplots lattice limma locfit MASS]; };
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|
cobindR = derive2 { name="cobindR"; version="1.8.0"; sha256="06nckxm5hz6c336p5fvfmccfzdri68qcmagkyjg7nnfsyl66fri1"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
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|
codelink = derive2 { name="codelink"; version="1.38.0"; sha256="11rs0nr0nqfmy0v4yfzd7wgq9g0rqzr7r7jcr16z79lc6f5lqm9z"; depends=[annotate Biobase BiocGenerics limma]; };
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|
cogena = derive2 { name="cogena"; version="1.4.0"; sha256="16imyy9y4jd71pnaf41isrmw711kp4ky61bljn8kmlm9kqf2lbm0"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; };
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|
compEpiTools = derive2 { name="compEpiTools"; version="1.4.0"; sha256="0pygd78pi7h050fra41kvwcx5id9ivisdlnaqdxwk1xd07xb67ck"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
|
|
compcodeR = derive2 { name="compcodeR"; version="1.6.0"; sha256="1f84n01c83p5x72ws7a7cam0g0l7n2wjy5pyf06hbwgc0ziz57cs"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
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|
conumee = derive2 { name="conumee"; version="1.2.0"; sha256="1410a8sby4azkj14wqxrsi5i4kiyhgnpidj70ysygk5y2mlghs4x"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges minfi rtracklayer]; };
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|
convert = derive2 { name="convert"; version="1.46.0"; sha256="04zg65yylg3rifn49k015nf38v3ga0kwq4m9hykb8lfqiw63sxgq"; depends=[Biobase limma marray]; };
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|
copa = derive2 { name="copa"; version="1.38.0"; sha256="0dmrmf60q83srilzxgwcknnd4wsx4xdlf6plfgz3wks6nyfwy256"; depends=[Biobase]; };
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|
copynumber = derive2 { name="copynumber"; version="1.10.0"; sha256="1g03cy5inbhzhl5hj8vma34xm8lixilhalavjysp93bwg4dfskv6"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; };
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|
cosmiq = derive2 { name="cosmiq"; version="1.4.0"; sha256="079423bhmjk5c0x4xq8kxqbcvj8mvh30gy31zr5xn7m9lysmzglc"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; };
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|
cpvSNP = derive2 { name="cpvSNP"; version="1.2.0"; sha256="1wnbl6wgflfhjkrv8l5i182mpfxk440rzacpsij0xq0f823nxxgf"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; };
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|
cqn = derive2 { name="cqn"; version="1.16.0"; sha256="0cmi8nfk5yh4mma43kay8pglysd26kq17kxa98yirwgdj8cgq5rj"; depends=[mclust nor1mix preprocessCore quantreg]; };
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|
crlmm = derive2 { name="crlmm"; version="1.28.2"; sha256="1acfd5w2h6z5ksclp7grb42p59jyjm2q4cx9pjc32y0cdvndqhy8"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; };
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|
csaw = derive2 { name="csaw"; version="1.4.1"; sha256="1yl4ckh0289k633kj6msl6rj7rdvcd9h8gnscz6p63n4c6mfpy13"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; };
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|
ctc = derive2 { name="ctc"; version="1.44.0"; sha256="1wlk1skc6vg10gdcdqdwc5mnh5ags7f13sxmjc19gg6n7wfkjrqg"; depends=[amap]; };
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|
cummeRbund = derive2 { name="cummeRbund"; version="2.12.1"; sha256="02d9g8rzwj47faijk26q6jg7p687gw87knyycxmljr9vn7157d20"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer]; };
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|
customProDB = derive2 { name="customProDB"; version="1.10.0"; sha256="04iiwfvjavn3zz6fhf24wd3xy0svviqqklg64hnwza2m4w50awag"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer stringr VariantAnnotation]; };
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|
cycle = derive2 { name="cycle"; version="1.24.0"; sha256="14xzwlwkb93bhqwwy36bsqimabpmg5an6n6y8xkh5zsxw2c7m1qi"; depends=[Biobase Mfuzz]; };
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|
cytofkit = derive2 { name="cytofkit"; version="1.2.2"; sha256="1sg6phm9lxw341rangllkiq81bz4073y6zg0d5qz0gyxywv2ycfs"; depends=[Biobase doParallel e1071 flowCore ggplot2 gplots igraph pdist plyr RANN Rcpp reshape reshape2 Rtsne shiny vegan VGAM]; };
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|
daMA = derive2 { name="daMA"; version="1.42.0"; sha256="1qggz9hrgm2xb2dz9k9gqwygj1ywy0qwzv7lqpn58pz590mz1xds"; depends=[MASS]; };
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|
dagLogo = derive2 { name="dagLogo"; version="1.8.0"; sha256="0knsvldhdmprqjdxcdi9ccva4fi8vx86mc257nbmj21ac72bynx3"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; };
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|
ddCt = derive2 { name="ddCt"; version="1.26.0"; sha256="1rqh6sgw7qlyrpyxgmg6xl7df2jicxzxzq6xnp7l40w6vnjc595a"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
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|
ddgraph = derive2 { name="ddgraph"; version="1.14.0"; sha256="0nmrz9cy7l31vym3fcc9m3dmgmbnd5r91p3fxpziaarphi27zszl"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; };
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|
deepSNV = derive2 { name="deepSNV"; version="1.16.0"; sha256="1vzcyqvjzzjlm3np3yyazdvj7jdiwc2wnxghaz8rnxyzm42bmjha"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
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|
deltaGseg = derive2 { name="deltaGseg"; version="1.10.1"; sha256="0dakvg2m99wm7zg84w3pzvpwi7sjdarib8bl14wyv2bh9lxq93s3"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
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|
derfinder = derive2 { name="derfinder"; version="1.4.4"; sha256="0pjsah2rgxy4584p815zwacspjwx42wv5q1h9v1rywmsbhhfmrdr"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
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|
derfinderHelper = derive2 { name="derfinderHelper"; version="1.4.1"; sha256="1mbhr766vl8skcs74xdfx5p7812x5xbv9pgn9nl2s1d9ifcs8zf8"; depends=[IRanges Matrix S4Vectors]; };
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|
derfinderPlot = derive2 { name="derfinderPlot"; version="1.4.1"; sha256="16zsq13v86h5zfngh8621ayw5dvb14r486dzak6lz59pqzmviw8g"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; };
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|
destiny = derive2 { name="destiny"; version="1.0.0"; sha256="1k8nf9gws6d60fp7mh43hjiaza7zxxfkpjzmi5qj2davjqbx1wn0"; depends=[Biobase BiocGenerics FNN igraph Matrix proxy Rcpp RcppEigen scatterplot3d VIM]; };
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|
dexus = derive2 { name="dexus"; version="1.10.0"; sha256="0hc28mkmnr37fmw6xw2cywla946gm0cxa8k4hi32d12cm9c24xqx"; depends=[BiocGenerics]; };
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diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.52.0"; sha256="1w44iihckyjw8hpzwr0dsc558c3vzdiw2nbwysmqn0dn4w18xkj2"; depends=[minpack_lm]; };
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|
diffHic = derive2 { name="diffHic"; version="1.2.2"; sha256="1qa21hqsmxi2f168z6r0qlv2453ljdnldc90c789dwi3067ysjnj"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
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|
diggit = derive2 { name="diggit"; version="1.2.0"; sha256="1c83jhih9sg39n7sf83ddsxwjjcqklh0ssb9a4jfyvfahsqcghcb"; depends=[Biobase ks viper]; };
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|
dks = derive2 { name="dks"; version="1.16.0"; sha256="1l98ya4f8mnzvpj1igzbn6s9yvmv3i31ll5l7hbipk4g7n1lyqal"; depends=[cubature]; };
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domainsignatures = derive2 { name="domainsignatures"; version="1.30.0"; sha256="0rr5d57cjkp46qp2908vh3wyfdgiyaikdgbcxipizcv5a00nq0rx"; depends=[AnnotationDbi biomaRt KEGG_db prada]; };
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|
dualKS = derive2 { name="dualKS"; version="1.30.0"; sha256="02j9l73brxa4fgsp9cbd3w7dxllvj744rby21dkfnw2c42rcxpvz"; depends=[affy Biobase]; };
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dupRadar = derive2 { name="dupRadar"; version="1.0.0"; sha256="1fk58zdrw8nwjq1cq7k3rb6nx5fxhkj1p6b6mv32ha8bxwdl3dj0"; depends=[Rsubread]; };
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dyebias = derive2 { name="dyebias"; version="1.28.0"; sha256="0vahrl947rf0wlz38v7jippdlvd5yhr02y554hs1ilcdz1czmyvn"; depends=[Biobase marray]; };
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easyRNASeq = derive2 { name="easyRNASeq"; version="2.6.3"; sha256="1r6q3f8zril2l0a6l18yw0is85nh4xn759mv8mxc2cmh0d4f60d5"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
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ecolitk = derive2 { name="ecolitk"; version="1.42.0"; sha256="0hcigc60k11s3ha0jwxlvw9zf66x8090yq5m72q6nzzjzr9rvv1r"; depends=[Biobase]; };
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edge = derive2 { name="edge"; version="2.2.1"; sha256="1hmk7ncjgb0lwm7964b6c7c425jw3d8cd3zcvrv1k5359wxzfwmc"; depends=[Biobase jackstraw MASS qvalue snm sva]; };
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edgeR = derive2 { name="edgeR"; version="3.12.0"; sha256="1n3fmrms48z7bh1sz64j242f08jg32dp0l25kba60abgypg2f2fw"; depends=[limma]; };
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|
eiR = derive2 { name="eiR"; version="1.10.1"; sha256="0770rawqw6ys1594f8xpnjjh0p7fav5qmbbq64byzv4hb5ldl7p0"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; };
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eisa = derive2 { name="eisa"; version="1.22.0"; sha256="0p3s6z7s4d165h4w5g1h273626h5j255c0hyjv5dlrdhr4ign7v6"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; };
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ensemblVEP = derive2 { name="ensemblVEP"; version="1.10.2"; sha256="0yhpqpjdr5z9m8khiyl8qh0sh6mqwalv6441qfmyq5wivv1nx2is"; depends=[BiocGenerics Biostrings GenomicRanges VariantAnnotation]; };
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|
ensembldb = derive2 { name="ensembldb"; version="1.2.2"; sha256="08mj3ccskslwqbnk0yz7s5rdh9vvp2adi7hqbz76w7zbvflfsm1v"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
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|
epigenomix = derive2 { name="epigenomix"; version="1.10.0"; sha256="03nv36zldpjwbwassn5ca26ibdy7cd148ywp7wd6igqjg2lcgich"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
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epivizr = derive2 { name="epivizr"; version="1.8.1"; sha256="1zgxmck5rry5h6jyi5kvbf4sf8902q21b172r25i1mzyiygqwpvn"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; };
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erccdashboard = derive2 { name="erccdashboard"; version="1.4.0"; sha256="1fj9wbm5sgshpnq855bq6cf13b9141p6r8gq2053k8p1gvb9gbxi"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
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|
erma = derive2 { name="erma"; version="0.2.0"; sha256="1pw5n5m0nis8crzpwd4wbfk7vija5r6r2g6jshc07vd2nya5fxsk"; depends=[Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 Homo_sapiens rtracklayer S4Vectors shiny]; };
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|
eudysbiome = derive2 { name="eudysbiome"; version="1.0.0"; sha256="10id5pcs29xsicr9ffpd8rd2fqvj776wgdbn80vvym87gyn3kxxh"; depends=[plyr]; };
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exomeCopy = derive2 { name="exomeCopy"; version="1.16.0"; sha256="09awyyfgs0k639nqrcrbq1k875qlyac1146w4ay6nxgijqy7iv82"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
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exomePeak = derive2 { name="exomePeak"; version="2.2.2"; sha256="03xj0h1cgxzbp2fk830l771jmmcll1bq81xips8hjgng3ywz5m1a"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; };
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explorase = derive2 { name="explorase"; version="1.34.0"; sha256="108p864qq8zh4x7p765ygrdkj4r0vm3s2fmi3scswkhcv3vjcjg3"; depends=[limma rggobi RGtk2]; };
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|
fCI = derive2 { name="fCI"; version="1.0.0"; sha256="17d592qmyia0j91sx8qlsv5xi3d4akd41rdqz0gsvnsbc5c494qn"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
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|
fabia = derive2 { name="fabia"; version="2.16.0"; sha256="0fm7bkqydks0qqfiifbkf5i7z8jb9l8bpbwkfy0kw4wfnzn4j7n8"; depends=[Biobase]; };
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facopy = derive2 { name="facopy"; version="1.4.1"; sha256="07ggz86c48rz8asqvfglrvsimnzh3ii43kzpm8ji6sd43i141650"; depends=[annotate cgdsr coin data_table DOSE facopy_annot FactoMineR ggplot2 GO_db GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; };
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factDesign = derive2 { name="factDesign"; version="1.46.0"; sha256="0i9aqf0asg0jzvb0ngdyfydgxgwwbxkhmzgc20r8ybjc3rgw0xk6"; depends=[Biobase]; };
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|
farms = derive2 { name="farms"; version="1.22.0"; sha256="1jmx5rajm6fkhx5gfpwh8nsqw0plhfzy1bibvkdf83arxjjr6s59"; depends=[affy Biobase MASS]; };
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|
fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.6.1"; sha256="188jq7g1qy5m05aqsyq51cq56zwf6k3awk3285kx4w3328gr6s2m"; depends=[Hmisc LiquidAssociation WGCNA]; };
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|
fastseg = derive2 { name="fastseg"; version="1.16.0"; sha256="0js8vf2s8vya0iwd8158agbhzppgicvsnvm5lhyhhg5zs49b71hb"; depends=[Biobase BiocGenerics GenomicRanges IRanges]; };
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|
fdrame = derive2 { name="fdrame"; version="1.42.0"; sha256="1kqhryvy4wb0c3dj76crlxvgr0h41znh8kn624n51ipfp34n5fgi"; depends=[]; };
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ffpe = derive2 { name="ffpe"; version="1.14.0"; sha256="0vdssf9ljk3x7zhx5x5af5wqhynkaz8pb6sr8zp6ihqfiw498r0q"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; };
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|
flagme = derive2 { name="flagme"; version="1.26.0"; sha256="1h9aa6s1r2g6sr81aslqq6jydyn98j9bbcy5q7dp9zf4agfd2n8h"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; };
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flipflop = derive2 { name="flipflop"; version="1.8.0"; sha256="1blqi39kmyy2zq6lb42nk30dcc0ivgqf8hifvil2j4iv650i5476"; depends=[GenomicRanges IRanges Matrix]; };
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|
flowBeads = derive2 { name="flowBeads"; version="1.8.0"; sha256="0nshbwv0wma33di9q1cih4kvfsfwvzwj0nd6qymq6zvxijl57231"; depends=[Biobase flowCore knitr rrcov xtable]; };
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flowBin = derive2 { name="flowBin"; version="1.6.0"; sha256="0icz00h87gmwl04kbbjkrsr2k6d8migkcgcld8hag23bspdfphrl"; depends=[BiocGenerics class flowCore flowFP limma snow]; };
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flowCHIC = derive2 { name="flowCHIC"; version="1.4.0"; sha256="0j7kvlc6l6cigz88r4jxws04xs628j272crvihh4fgklp83jqyr7"; depends=[EBImage flowCore ggplot2 hexbin vegan]; };
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flowCL = derive2 { name="flowCL"; version="1.8.0"; sha256="064946w944gw7l0hizw974i21cahzvfj1xza8f7ay9rx2baz28sh"; depends=[Rgraphviz SPARQL]; };
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flowClean = derive2 { name="flowClean"; version="1.6.0"; sha256="0ck0fqbx7zrj56nn4c30qgbn5rncqch8kcc6dra6nxib9p9hy0db"; depends=[bit changepoint flowCore sfsmisc]; };
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flowClust = derive2 { name="flowClust"; version="3.8.0"; sha256="1w2a9ls1cyvfwx8b7vcmxxzyj1crdpyifqld99lcwcnz5g6cw9cj"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; };
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|
flowCore = derive2 { name="flowCore"; version="1.36.9"; sha256="0fzjc76p6d7w4rl57qc7vqc6bn9f6xy8dvdgrdh6hksqxrdxgl3a"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; };
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flowCyBar = derive2 { name="flowCyBar"; version="1.6.0"; sha256="0j9hdcgkh1glfyxa9wcwpdxrkn3vgfns7w15xp341m2c4lf7rq7s"; depends=[gplots vegan]; };
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flowDensity = derive2 { name="flowDensity"; version="1.4.0"; sha256="1gr9rd3brxqpg3dzgsrvrz104lvzcs8kf50zbx2nh22viyv1kmfp"; depends=[car flowCore GEOmap gplots RFOC]; };
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|
flowFP = derive2 { name="flowFP"; version="1.28.0"; sha256="0sa17dnn2x1wq4mk719nbfpabjslyv8aafc8i0g09dlb9zm303q7"; depends=[Biobase BiocGenerics flowCore flowViz]; };
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flowFit = derive2 { name="flowFit"; version="1.8.0"; sha256="1fja1d5irh71a3rqdsbw5sb14ss2xmird6vxcps96r6s6rz2bra3"; depends=[flowCore flowViz gplots kza minpack_lm]; };
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|
flowMap = derive2 { name="flowMap"; version="1.8.0"; sha256="0rkdspl9lnasc8axlsx076g14pkgwrlz9nbxy0f1z67w991d823p"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
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|
flowMatch = derive2 { name="flowMatch"; version="1.6.0"; sha256="121a6khppgrdim1g5yi67s74npgvg73qb741x9gry5zz4q0z70fq"; depends=[Biobase flowCore Rcpp]; };
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|
flowMeans = derive2 { name="flowMeans"; version="1.30.0"; sha256="08dvpfvpqp99lm1lj5fryqqmskgqpx58m62n96ff319wzxmf1ass"; depends=[Biobase feature flowCore rrcov]; };
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|
flowMerge = derive2 { name="flowMerge"; version="2.18.0"; sha256="109rx6pyyvc451rl31lb6qxajmsml2jsp81dd2d3shv1zdc3jj2c"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; };
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|
flowPeaks = derive2 { name="flowPeaks"; version="1.12.0"; sha256="1wm24xdzlbrr1j676h5padc87b9qz8x54zp2lkfag4g6iqbgflyg"; depends=[]; };
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|
flowPlots = derive2 { name="flowPlots"; version="1.18.0"; sha256="14mnkzyszmzl4wdc8g2b9m53h5k2b7mcm23xqldnxx88w4jqc66q"; depends=[]; };
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|
flowQ = derive2 { name="flowQ"; version="1.30.0"; sha256="1yz0w0bpv98l319y8dw82qaykg6w70sxpzmhxdckwdqjpixq5sf5"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; };
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|
flowQB = derive2 { name="flowQB"; version="1.14.0"; sha256="1swsdqra8w8z27p2mv1q37ydak7rjifxm78h5x6mhv1vfq4faz12"; depends=[Biobase flowCore MASS]; };
|
|
flowStats = derive2 { name="flowStats"; version="3.28.1"; sha256="1i9x94qk4cq1fkix9r2qn34k74v2i732ldj2s68ynqniyvsj6vdb"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mvoutlier]; };
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|
flowTrans = derive2 { name="flowTrans"; version="1.22.0"; sha256="0rqg12avmpr169i3jd1rd1ncpzkplm840nhv9h0gcqirai70pqhc"; depends=[flowClust flowCore flowViz]; };
|
|
flowType = derive2 { name="flowType"; version="2.8.1"; sha256="1ck940f18s89h8iqbkspibykr68473vb93graah3gqn7svw6970g"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; };
|
|
flowUtils = derive2 { name="flowUtils"; version="1.34.0"; sha256="0qba66cfsy8facvdpnl5jf71xwaqs3w6j2z0ph7c39zyng0nibwp"; depends=[Biobase corpcor flowCore flowViz graph RUnit XML]; };
|
|
flowVS = derive2 { name="flowVS"; version="1.2.0"; sha256="0hls6c9s3h470hzayfd1k9vn5v146cymfp2b20hzjyc6dg20fj2s"; depends=[flowCore flowStats flowViz]; };
|
|
flowViz = derive2 { name="flowViz"; version="1.34.1"; sha256="1ggy8lgkf2j00l8cg4mijg9yydxr4gmfnby0ngiynk94h3i68z94"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
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flowWorkspace = derive2 { name="flowWorkspace"; version="3.16.15"; sha256="1pydk53x2myb97lfyc5wkynbwxb23p519m0krcq3g77n2baa9567"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowUtils flowViz graph gridExtra jsonlite lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
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flowcatchR = derive2 { name="flowcatchR"; version="1.4.0"; sha256="0rd9sg3d17ihrm4zz4jpvv3n4xcz4djcfnsvx6qzkri2vjmk7spj"; depends=[abind BiocParallel colorRamps EBImage rgl]; };
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fmcsR = derive2 { name="fmcsR"; version="1.12.2"; sha256="1mv6ds20m9b0b2326cxy486kri2fa40lm23ck2sx1vf6lsnfh6g6"; depends=[BiocGenerics ChemmineR RUnit]; };
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|
focalCall = derive2 { name="focalCall"; version="1.4.0"; sha256="1dqk0lda24lkhfsid15c6n121s63zbk6658za5qxqkxdd82z7axf"; depends=[CGHcall]; };
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|
frma = derive2 { name="frma"; version="1.22.0"; sha256="0j4zxxmmgd9jq9g7if7y0i7fkiynfikkll05p14h2jrmn2ywimdm"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; };
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frmaTools = derive2 { name="frmaTools"; version="1.22.0"; sha256="1lxjr8yzi2hna5yygyaqxr5fqxfis4k3aczljlpm86mp8r6f80qa"; depends=[affy Biobase DBI preprocessCore]; };
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|
gCMAP = derive2 { name="gCMAP"; version="1.14.0"; sha256="09dcaq0763kb399wh232n6r1s8qkj0c4zcmpjp6cz08w6n7lchgx"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; };
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|
gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.10.0"; sha256="00qx90gycqqca8b3brkl0bkckn7saqz9z38vinhjxlyaanc9v6ml"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; };
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|
gQTLBase = derive2 { name="gQTLBase"; version="1.2.1"; sha256="1a1ndjjp2zn1lsfahpvi3xhkdgwl5wk0bdm7kc92aidq50a2db42"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors]; };
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|
gQTLstats = derive2 { name="gQTLstats"; version="1.2.0"; sha256="1cwri36z85zyyr48dkkl7qkgbx9fpv7y38mbbm470adc7ac56zbv"; depends=[AnnotationDbi BatchJobs Biobase BiocGenerics doParallel dplyr ffbase foreach gam GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gQTLBase IRanges limma reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; };
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gaga = derive2 { name="gaga"; version="2.16.0"; sha256="198521xnznvwg8k5l6pak3jcyp9ml3hbzjk10vdj926izslnfavw"; depends=[Biobase coda EBarrays mgcv]; };
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|
gage = derive2 { name="gage"; version="2.20.1"; sha256="08lq8j07c855v54xia97ykkd81307xyh30lbcwv7by5grnkrxqbp"; depends=[AnnotationDbi graph KEGGREST]; };
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|
gaggle = derive2 { name="gaggle"; version="1.38.0"; sha256="0bl60nca27rkij061h6g16ddlkq29rb1wh5pr2hz87y74pmb8m2w"; depends=[graph rJava RUnit]; };
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|
gaia = derive2 { name="gaia"; version="2.14.0"; sha256="099imzsa7pghp7qbxjjnfrqc8zkn25wm5xj9jn40m9as11zxdrsx"; depends=[]; };
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gaucho = derive2 { name="gaucho"; version="1.6.0"; sha256="1c1aaidhdv9rr2v3q6832q0ajc3g7l4gfx1rhf27kv4pn1j5s23s"; depends=[GA graph heatmap_plus png Rgraphviz]; };
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|
gcatest = derive2 { name="gcatest"; version="1.0.0"; sha256="1kjz7msk59y4vdhm9wi25yia5d4glgpdrd7ykl3fb5sz83vggmw1"; depends=[lfa]; };
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|
gcrma = derive2 { name="gcrma"; version="2.42.0"; sha256="1bzrr6q9m8i6316iamx10fk9y06yv628m8prsn5fhggjawyzp6di"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; };
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|
gdsfmt = derive2 { name="gdsfmt"; version="1.6.2"; sha256="104r6wl5vwncq38gd93sjzwkqlxqkr60qq300rmwk14p288fr9kh"; depends=[]; };
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geNetClassifier = derive2 { name="geNetClassifier"; version="1.10.0"; sha256="183aa5mzdm97rxzpcy0m93ywm7p5xvv38lsly6mb6y0afc3slfb4"; depends=[Biobase e1071 EBarrays minet]; };
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|
geecc = derive2 { name="geecc"; version="1.4.0"; sha256="00dkp4ldnpadvw6fdva0gg0m843j7i667r0i33c9dsrjfc7k7z8q"; depends=[gplots hypergea MASS]; };
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|
genArise = derive2 { name="genArise"; version="1.46.0"; sha256="1a85r7lbbz090k2kiza97b18vh4gn01wqp7qs8a8skxina6qsig6"; depends=[locfit tkrplot xtable]; };
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geneRecommender = derive2 { name="geneRecommender"; version="1.42.0"; sha256="0823w9haab5wc06rk9853l07vgwpzxpivh84y3av6mhfn36lz0id"; depends=[Biobase]; };
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geneRxCluster = derive2 { name="geneRxCluster"; version="1.6.0"; sha256="1blkzf503bfdfvbagbk41167qkd05mdxd96lav5fz1ry780i8lb7"; depends=[GenomicRanges IRanges]; };
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genefilter = derive2 { name="genefilter"; version="1.52.1"; sha256="1pl1vbxfajms26734iprqlb4w1ly2w5101z8d895znc4lfbp6mvs"; depends=[annotate AnnotationDbi Biobase survival]; };
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genefu = derive2 { name="genefu"; version="2.2.0"; sha256="0q49hnxz59hack7j28haazia6qd5pkmgyq5jaypvaa3jnvcsfij7"; depends=[AIMS amap biomaRt iC10 mclust survcomp]; };
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geneplotter = derive2 { name="geneplotter"; version="1.48.0"; sha256="13ivmp486m1ka0ww3kdg5k5czps9plnrn9p6maq2gdq8dlkgvdly"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
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genoCN = derive2 { name="genoCN"; version="1.22.0"; sha256="0irc6cwlaf71g76vrijw6z499aiw0h8mll0521cc12hs4wq9060z"; depends=[]; };
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genomation = derive2 { name="genomation"; version="1.2.2"; sha256="0kvzwc21zsh2c8d34yn935ncn38bfkpzmknycd8h7b0521x20mi9"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr readr reshape2 Rsamtools rtracklayer seqPattern]; };
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genomeIntervals = derive2 { name="genomeIntervals"; version="1.26.0"; sha256="0fnxrxb1lk59608kcpc19yxrz3all346qh7rs668f3kk7hj456gb"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
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genomes = derive2 { name="genomes"; version="2.16.1"; sha256="1wcb1x0srfk36r70xn80fka33942c4jn0qq1rhg375m9bqmrwj84"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; };
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genoset = derive2 { name="genoset"; version="1.24.0"; sha256="0xxh23sdb5qjfh97a2psp70zb54zx40x8501bpp7gzgqbfn1wf7w"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
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genotypeeval = derive2 { name="genotypeeval"; version="1.0.0"; sha256="1clljhqy57yy0ss9700zfnsgnby3dism8z2682xjhzzprg049cx4"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; };
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gespeR = derive2 { name="gespeR"; version="1.2.0"; sha256="0s8lndwwqkkkiyqzi8xpqz6clzjrkmkkrh2f1ch80hvfj83rb89d"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; };
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|
ggbio = derive2 { name="ggbio"; version="1.18.5"; sha256="0pj0v4frj9dhyyq5mb8vls1dnlv1lvah9csrg9rz33x61px7iplq"; depends=[Biobase BiocGenerics Biostrings biovizBase BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
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ggtree = derive2 { name="ggtree"; version="1.2.17"; sha256="1r0zxwab7pp5zhxgcpir24kzwv2vgw1fm04wqbfy2in3pj2phr64"; depends=[ape Biostrings ggplot2 jsonlite magrittr tidyr]; };
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girafe = derive2 { name="girafe"; version="1.22.0"; sha256="1l7vdfrvr0y0l1lwnsyzkbx8p35rkmxnnclfqqqailhy5q5prjp2"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; };
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globaltest = derive2 { name="globaltest"; version="5.24.0"; sha256="0a1q8r581vq4srpy57ixbcnb87ajiazj5dzyswyjfhs2l9z5zhdq"; depends=[annotate AnnotationDbi Biobase survival]; };
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gmapR = derive2 { name="gmapR"; version="1.12.0"; sha256="1zzhy2cmqg0npyc6zilsjb8dn48dyva7xb8b7d6czgwb4rvyrsrr"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
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goProfiles = derive2 { name="goProfiles"; version="1.32.0"; sha256="0knflwy6yarkp5r3l5q14pkcmbwpivgylfd33a8xwn3w87qk9gxw"; depends=[AnnotationDbi Biobase GO_db]; };
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goTools = derive2 { name="goTools"; version="1.44.0"; sha256="0sq4l1ayh65x7b0spmffxqx68cll8wgbj30cp0ylnyb6s78whr6q"; depends=[AnnotationDbi GO_db]; };
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goseq = derive2 { name="goseq"; version="1.22.0"; sha256="0zfly8fl77s59j6sdgn4c0gfwwsm1q8r57pf4h6zgxnbahll2b10"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; };
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gpls = derive2 { name="gpls"; version="1.42.0"; sha256="1a8qhyyidx3rnipjr42q2jzgcjljij2g6a22dlk9p350sf426i0f"; depends=[]; };
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gprege = derive2 { name="gprege"; version="1.14.0"; sha256="0mc8x8faj8pf8zb3mywjscn2rzs7bc0ws507a32r7zl5j8p9rzag"; depends=[gptk]; };
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graph = derive2 { name="graph"; version="1.48.0"; sha256="16w75rji3kv24gfv44w66y1a2y75ax26rl470y3ypna0ndc3rrcd"; depends=[BiocGenerics]; };
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graphite = derive2 { name="graphite"; version="1.16.0"; sha256="19dzzmy3jm555iz3wn6m0izn7xpl66q1rfngfcyg3czz266x4kv4"; depends=[AnnotationDbi BiocGenerics graph rappdirs]; };
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groHMM = derive2 { name="groHMM"; version="1.4.1"; sha256="0ndbdn2jqnyla7malppza9f92x7wybbg0n7lfl1ydwx53mwndpz6"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
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gtrellis = derive2 { name="gtrellis"; version="1.2.0"; sha256="00alv9amhwgcpzy8g2av46r183070nansvswai0m9ppd4rhc53zh"; depends=[circlize GetoptLong]; };
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gwascat = derive2 { name="gwascat"; version="2.2.0"; sha256="06v3rc21riv53qpvaizsbrsi5zdmz1fzjhbjf741wkgbh280g6gl"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
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h5vc = derive2 { name="h5vc"; version="2.4.1"; sha256="17d5y6hzwjmj9dayrdss0shjqkphv12p70s8g7052q6sljx8iwc2"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; };
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hapFabia = derive2 { name="hapFabia"; version="1.12.0"; sha256="019fsyc3a2myxapjk2wx978q9jkhsz2889rkvs7vb0aqf8bg0psr"; depends=[Biobase fabia]; };
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hiAnnotator = derive2 { name="hiAnnotator"; version="1.4.0"; sha256="0i4bxzxvqll1n5ardclkfg70hijy3mv4la90g4y6ycl66q0mycrn"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; };
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hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.6.0"; sha256="1cszyap1cngrfx59mf76826iiwahlhj2l6iv97470nmx5a9rymkh"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator rSFFreader sonicLength xlsx]; };
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hierGWAS = derive2 { name="hierGWAS"; version="1.0.0"; sha256="0hff1vi86mh0nqgld206bp18swzxnrkr5miagnmbr0v7ayh70lxb"; depends=[fastcluster fmsb glmnet]; };
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|
hopach = derive2 { name="hopach"; version="2.30.0"; sha256="0yggs5f425g5q04lwischjilzl0q8dsnfaf5hk078h0fzpm4j3vs"; depends=[Biobase BiocGenerics cluster]; };
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|
hpar = derive2 { name="hpar"; version="1.12.0"; sha256="0dmzn44lh6mfdpxfqvz3jp0q8xx9j6y8nqqp9xw3wp2ahf3p30k7"; depends=[]; };
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htSeqTools = derive2 { name="htSeqTools"; version="1.16.0"; sha256="1bjbagx6s66fiia71n7ljg5rfc2v22bbp2sk718mf1i9i38c58lm"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS]; };
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hyperdraw = derive2 { name="hyperdraw"; version="1.22.0"; sha256="1axxdll3mfnslgx6a1b6kfjvimbkgna73qmpvz8aslhihry7c7hi"; depends=[graph hypergraph Rgraphviz]; };
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hypergraph = derive2 { name="hypergraph"; version="1.42.0"; sha256="1z2x22xm7609sjma54i48f5fax0fm56mjmzqk55p5x3jyq53j0jw"; depends=[graph]; };
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iASeq = derive2 { name="iASeq"; version="1.14.0"; sha256="0l3vzbin04sb3z0zzgzbp68clp23cg3pyid9aj3p67z38gy42024"; depends=[]; };
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iBBiG = derive2 { name="iBBiG"; version="1.14.0"; sha256="13z2i2yp7bxn8v8in3nrw3blj2dd4kcf1hjawww1yzl1q8zasxx2"; depends=[ade4 biclust xtable]; };
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iBMQ = derive2 { name="iBMQ"; version="1.10.0"; sha256="1hdzqz19akdsmswspq13n99magn8v4r7zlb684hljnr05jbczrcp"; depends=[Biobase ggplot2]; };
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iCheck = derive2 { name="iCheck"; version="1.0.0"; sha256="1bhnbiwihln9xbl0s4lp70y6qcc1i3hm4n34dndx5frwnm8g1zc2"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d vsn]; };
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iChip = derive2 { name="iChip"; version="1.24.0"; sha256="09vx2sz88gii3d0wi0sf3m1hi7i2737mp2xzawchdh9pr9i7p2qw"; depends=[limma]; };
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iClusterPlus = derive2 { name="iClusterPlus"; version="1.6.0"; sha256="1a0a6pyv10fy7hhfsar14wrwqzj4dd1qlcvgkc4cs3sbrns2gjw2"; depends=[]; };
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iGC = derive2 { name="iGC"; version="1.0.0"; sha256="091bm1qssl8ngiv9cbl6i7mdgi65l1ywk5a78jl01j414h190bra"; depends=[data_table plyr]; };
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iPAC = derive2 { name="iPAC"; version="1.14.0"; sha256="1gzxv6jkn7crylklmnvhm86gczmsr80dmw1a7flaisiiy40k128g"; depends=[Biostrings gdata multtest scatterplot3d]; };
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iSeq = derive2 { name="iSeq"; version="1.22.0"; sha256="1bh2s5cc7jsz1gdh0f5f09izm3b2pjmzbhmr0vyp1b9nc12i35v9"; depends=[]; };
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ibh = derive2 { name="ibh"; version="1.18.0"; sha256="0damqv5bn9fyki7ghqflz8bzg42v3wf1gi173adk9hpj9glic73j"; depends=[simpIntLists]; };
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idiogram = derive2 { name="idiogram"; version="1.46.0"; sha256="154hrvq86bm8f51mbgzfzg3gjyzzlnsl3yfmqglk78smj2a152lf"; depends=[annotate Biobase plotrix]; };
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illuminaio = derive2 { name="illuminaio"; version="0.12.0"; sha256="1mjgs1kf4wzb3zvqyq4w81sqrb4nrf6qwdlg6hz471xh6c3b7avb"; depends=[base64]; };
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imageHTS = derive2 { name="imageHTS"; version="1.20.0"; sha256="1dg8cmrnzlv2qm5lf9771fiir5l0cql6pmfmv0l3037wisdgz1jw"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; };
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immunoClust = derive2 { name="immunoClust"; version="1.2.0"; sha256="1hgla6chdpbc3yk8k5i8pzkxr17clirpcihp5gczr9xnqx9k8i2h"; depends=[flowCore lattice]; };
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impute = derive2 { name="impute"; version="1.44.0"; sha256="0y4x5jk7gsf4xn56jrkdcdnxpcfll4h6ivncd7n4snmzixldvmvw"; depends=[]; };
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inSilicoDb = derive2 { name="inSilicoDb"; version="2.6.0"; sha256="1avxm8qm9rblck94v0aq0na70jfl2cyr9xmbbk27n5hgp1cnaizf"; depends=[Biobase RCurl rjson]; };
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inSilicoMerging = derive2 { name="inSilicoMerging"; version="1.14.0"; sha256="1xiq66b0vjrcxf4nbmk5mmn1dlxbpa879z04f00w3yz1k7rx6782"; depends=[Biobase]; };
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intansv = derive2 { name="intansv"; version="1.10.0"; sha256="0fgc45gaqm2vpvcbvwm54w93i7fmp4pv365pqqcq6sy3lilzxn92"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
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interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.8.0"; sha256="0gkjjdx20438hnbs6hhshkx0k4ja2xci0mcg2qcbgg0ajsi0zx86"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
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interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.8.0"; sha256="1zibrbykz45w04xn9c0fc65jjqcg9dqzlpac248ry4hqfw21yxw8"; depends=[BiocGenerics shiny]; };
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inveRsion = derive2 { name="inveRsion"; version="1.18.0"; sha256="05jwxwjyvkilfmygf16k3d55ma7s1ya7lyxh8v4pd8gql7v3kllq"; depends=[haplo_stats]; };
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iontree = derive2 { name="iontree"; version="1.16.0"; sha256="1pamgkg85qi3iqqws7a3l8lph428alz1dzf08x309njqz8cbzw91"; depends=[rJava RSQLite XML]; };
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isobar = derive2 { name="isobar"; version="1.16.0"; sha256="1awi1z5aljmagxyrj3xfw0j24r8acrq0vrq691jrfjx625aqq81n"; depends=[Biobase distr plyr]; };
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iterativeBMA = derive2 { name="iterativeBMA"; version="1.28.0"; sha256="0y9api2dibn5n0yqvyc2xag4xlzxq0h9sdf29ri9v1kfvpgksn9y"; depends=[Biobase BMA leaps]; };
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iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.28.0"; sha256="02g355bmjf1lcdkgr62a8sf2vckmdziia45w5gh4mmyf5hk4w9fi"; depends=[BMA leaps survival]; };
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jmosaics = derive2 { name="jmosaics"; version="1.10.0"; sha256="1q67ylrgc2abny2wxgsl1cni225inar1dhim0psrbrf5ik77kgmk"; depends=[mosaics]; };
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joda = derive2 { name="joda"; version="1.18.0"; sha256="0fjbxczwkn8f4p0h8dgi3vfn4qf9a650wmp01q20j7f0jsmmb06x"; depends=[bgmm RBGL]; };
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kebabs = derive2 { name="kebabs"; version="1.4.1"; sha256="1fqvp17x6z7hpgh4z71npvvskhd4j68g3p67ifc8phrmlqyaa84d"; depends=[Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; };
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keggorthology = derive2 { name="keggorthology"; version="2.22.0"; sha256="1sl0h63f3vvydbbj90hp5arswr6mzj5xlhqa6wbj3jhyq169qi5x"; depends=[AnnotationDbi DBI graph hgu95av2_db]; };
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lapmix = derive2 { name="lapmix"; version="1.36.0"; sha256="1ambwxc4j6y959ww48s09pyrf4v1fghv6grybmy41vhczqvqhkdx"; depends=[Biobase]; };
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ldblock = derive2 { name="ldblock"; version="1.0.0"; sha256="1snzfyfvji26n5j9jl9ib9wj7m8aln187zchpv182szrivqd1yqc"; depends=[Matrix snpStats]; };
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les = derive2 { name="les"; version="1.20.0"; sha256="0dgajsws35qg1x5i12hnp0p3qixq6nqsxm16qws93vhvgmnl540a"; depends=[boot fdrtool gplots RColorBrewer]; };
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lfa = derive2 { name="lfa"; version="1.0.0"; sha256="1lxirjinq6r3g749li0m8llrv195q9kjcwmd9gyvk84i570nliy9"; depends=[corpcor]; };
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limma = derive2 { name="limma"; version="3.26.8"; sha256="0pw91q8ahjzagyx7p564z812lczvbbc6m4mymwn30di8xv1vd3mv"; depends=[]; };
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limmaGUI = derive2 { name="limmaGUI"; version="1.46.0"; sha256="14avwg48kf0m203yzlz69nbn2zcw65v70d6lkf65ahkl3rapij1h"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
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lmdme = derive2 { name="lmdme"; version="1.12.0"; sha256="102v67asih0czi8yrc9v859dwfb2c3s14qppcjdif6b04xs92pgv"; depends=[limma pls stemHypoxia]; };
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logicFS = derive2 { name="logicFS"; version="1.40.0"; sha256="10c154jy6lrycsnk8912572m5hjv2ngf2q3gr1wmavyan4bsqwvd"; depends=[LogicReg mcbiopi]; };
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logitT = derive2 { name="logitT"; version="1.28.0"; sha256="1qbimjjl5xv5h30r74bd86dg10djajb01qav6gp95l6f59fx2j1q"; depends=[affy]; };
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lol = derive2 { name="lol"; version="1.18.0"; sha256="0dc3ga7yalzfngh3y33sa4bchhbxgndkls3vdxh4yzcsdvk60i1f"; depends=[Matrix penalized]; };
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lpNet = derive2 { name="lpNet"; version="2.2.0"; sha256="0sscs69mwzsz8bifgkmaa08zms6vqqls727p8gz4zq79nlw726yj"; depends=[lpSolve nem]; };
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lumi = derive2 { name="lumi"; version="2.22.1"; sha256="0c1vzplvjk6b9p81cj76vs5rp33swdp0m142hwbw4jfw46rx0aqq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
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mAPKL = derive2 { name="mAPKL"; version="1.2.0"; sha256="1k1yxxj6371sagiy63fl1dh8d71cqg6gvx8pkjy3ahp1hbh45b6l"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; };
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mBPCR = derive2 { name="mBPCR"; version="1.24.0"; sha256="1n9s75jx7pkq8vsq2ycyfgnk5mrfx3lr0ykp486ns8xmas3yyn3c"; depends=[Biobase oligoClasses SNPchip]; };
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mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.4.0"; sha256="0flb1lqsq7ldicidag20icnhmds2qr85yrbjsv4h06klggq2vjvg"; depends=[GenABEL MASS outliers qtl]; };
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maCorrPlot = derive2 { name="maCorrPlot"; version="1.40.0"; sha256="1chv95b3fi1jiy7nbxfj4szhjqm1ycb3xarjrd20xln5msainf7h"; depends=[lattice]; };
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maPredictDSC = derive2 { name="maPredictDSC"; version="1.8.0"; sha256="08wb622jp98xnqx8hh09n98ln8ifc21c0bc5gah5y68ldmg0x2iw"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; };
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maSigPro = derive2 { name="maSigPro"; version="1.42.0"; sha256="06a69r685qpjyi49yq7lw444533m9hhqb56fpki2w0067wh6a54m"; depends=[Biobase limma MASS Mfuzz]; };
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|
maanova = derive2 { name="maanova"; version="1.40.0"; sha256="112hbyfw18dshshsmbaylwra169w6bbwwqql3d96s0in1fl20mdl"; depends=[Biobase]; };
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macat = derive2 { name="macat"; version="1.44.1"; sha256="061y6a1q7c9r9a01hy6l86wc085f530y7hjw7asx506cf91ifwdk"; depends=[annotate Biobase]; };
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|
made4 = derive2 { name="made4"; version="1.44.0"; sha256="161vs8jbc711n9x67i31818a3nzjp74rm3dw20aqrhfbikvi9r7g"; depends=[ade4 gplots RColorBrewer scatterplot3d]; };
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|
maigesPack = derive2 { name="maigesPack"; version="1.34.0"; sha256="08pszyq03f1vjgirq0zcv31m4c0acdbfh622qiw0x0w1gz6plm0g"; depends=[convert graph limma marray]; };
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makecdfenv = derive2 { name="makecdfenv"; version="1.46.0"; sha256="0ca7hc4apamg8i2b8fb56mchksw26jj139clq3vxw6nl4ny9ipvg"; depends=[affy affyio Biobase zlibbioc]; };
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manta = derive2 { name="manta"; version="1.16.0"; sha256="0j6zll7b1qqdnydg59hywargw6bivry3cx5m2wpj79wn673kib3c"; depends=[caroline edgeR Hmisc]; };
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marray = derive2 { name="marray"; version="1.48.0"; sha256="103nag8ygjyw8p9v94y2c6lgiynbz2x4s6i71l7ydv2ipfr6b2fb"; depends=[limma]; };
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maskBAD = derive2 { name="maskBAD"; version="1.14.0"; sha256="18lvg85ss29wwxb60a2nwpc1v7d7cdl5al2wki1c0d770f7b232r"; depends=[affy gcrma]; };
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massiR = derive2 { name="massiR"; version="1.6.0"; sha256="1wfvzx2ysl2hlcx4nlzfw5lb4bal6ysmyzf6gw3y4023dyrlzb64"; depends=[Biobase cluster diptest gplots]; };
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matchBox = derive2 { name="matchBox"; version="1.12.0"; sha256="1p92c8vp9c65g8qzb3jlz7lniizpkymry1mh4p7izclf5mrrwk3s"; depends=[]; };
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mcaGUI = derive2 { name="mcaGUI"; version="1.18.0"; sha256="0rxhs059z0l6lal33m78hkp73k46c2pdy0nn5lxwxr590fglvh0f"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; };
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mdgsa = derive2 { name="mdgsa"; version="1.2.0"; sha256="05lqj7d4464z976w4rvnzpv1abihq1fpxhcl2zyg5izwqpq6ga9r"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; };
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mdqc = derive2 { name="mdqc"; version="1.32.0"; sha256="1aaria9nm9b4bl6r4lx0icjb20zrxcc0g8bj9jn2d04s8bzihmjw"; depends=[cluster MASS]; };
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meshr = derive2 { name="meshr"; version="1.6.2"; sha256="1gpdfgzxcaz0m2a6aji7zmr7bymdh7h4cd5agcwl3ip3lzsj76nb"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; };
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messina = derive2 { name="messina"; version="1.6.0"; sha256="039409wfdbv4hcj4zif581dy03l1wqg7nr1g8yc7ispqwpxnhwzf"; depends=[foreach ggplot2 plyr Rcpp survival]; };
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metaArray = derive2 { name="metaArray"; version="1.48.0"; sha256="1zx9ymjqh851r33jv7fpyy4319fqi2kgjgxxbgpq1xl6cfkglr4h"; depends=[Biobase MergeMaid]; };
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metaMS = derive2 { name="metaMS"; version="1.6.0"; sha256="1kkxx5hvjkljzrdq6g00dzw0k8y15h7q2fa9j8899jvq9p11yyiq"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; };
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metaSeq = derive2 { name="metaSeq"; version="1.10.0"; sha256="10nx4jr2mwk5zw6mag0j6v2rnn6h0pnp97pdmmsz8fgkx6245ygm"; depends=[NOISeq Rcpp snow]; };
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metaX = derive2 { name="metaX"; version="1.0.2"; sha256="1mqxwb4p1mw5821apyqb22vq2f091n95yar4x4h6cf1h3jxglj12"; depends=[ape BBmisc boot bootstrap CAMERA caret data_table DiffCorr DiscriMiner doParallel dplyr faahKO ggplot2 igraph impute lattice missForest mixOmics Nozzle_R1 pcaMethods pheatmap pls plyr preprocessCore pROC RColorBrewer RCurl reshape2 scatterplot3d SSPA stringr VennDiagram vsn xcms]; };
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metabomxtr = derive2 { name="metabomxtr"; version="1.4.0"; sha256="1zwqz9yl154c3h7qhrmkf2zcvzi2azm1sdkvrpyxg7zjks3bmyz8"; depends=[Biobase Formula multtest optimx plyr]; };
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metagene = derive2 { name="metagene"; version="2.2.1"; sha256="1l0zfhk4gnm3gvy24igismpb3j3m6vh4mb4q41cfrpkmxn2zlvaq"; depends=[BiocParallel DBChIP GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges muStat R6 Rsamtools rtracklayer]; };
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metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="1.0.0"; sha256="1lbb505s976j2jxxi7snhd1yahcs0ca9qnicq12b5jmp3ki1br9k"; depends=[Biobase Biostrings dplyr lattice lazyeval magrittr RSQLite ShortRead stringr]; };
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metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.12.0"; sha256="0bqxm37ds9a5dibzlxnbdvvqcyzwxxnnw7i6a04g84k885zzxr3a"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; };
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metahdep = derive2 { name="metahdep"; version="1.28.0"; sha256="1vl87mc4yl3il9hmsybbwjga610p3lh5717n4csjyaywskqa1ixk"; depends=[]; };
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metaseqR = derive2 { name="metaseqR"; version="1.10.0"; sha256="1gy5ywrxqwd8lizbj9lk6qck6zwk670j5y2f0ayz6xvkki4vab97"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; };
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methVisual = derive2 { name="methVisual"; version="1.22.0"; sha256="1kcqhlv0lmr7wlkxjl9qqv2676pwna3i4w5xpm4inwgcb892zgjm"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; };
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methyAnalysis = derive2 { name="methyAnalysis"; version="1.12.1"; sha256="1fl07k42j292cjr6vgwra84zhwpkaygjr7pqbkiq0abi29ifgw7i"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer VariantAnnotation]; };
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methylMnM = derive2 { name="methylMnM"; version="1.8.0"; sha256="1jj6s6pr3hih31n98jsgil3k7n19n5ab4rylfmfnzlbgsdmnw4kq"; depends=[edgeR statmod]; };
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methylPipe = derive2 { name="methylPipe"; version="1.4.5"; sha256="013rrdm7nx9m9g0ym0j1cvzrgplw149ivsrfcjfylxdjgwvw61yz"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
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methylumi = derive2 { name="methylumi"; version="2.16.0"; sha256="1glp1p7jvnsqarpw92nha6hrrhalh5wm262imwmpbfiik7glp217"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
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mgsa = derive2 { name="mgsa"; version="1.18.0"; sha256="1qdjl9cfyi2fmfm3nlzhp9wdpmvagddvb2cwy6j1pynbx03m55gl"; depends=[gplots]; };
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miRLAB = derive2 { name="miRLAB"; version="1.0.1"; sha256="0mkhrzlpf65kc3vwxlc2ckymaziqwxdc0q2rxd77ajdblbccbg59"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; };
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miRNApath = derive2 { name="miRNApath"; version="1.30.0"; sha256="0syi2kc6m9zhqaxhzj9h9micnracjj3yfgs8r5zlhs9hdp14jspi"; depends=[]; };
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miRNAtap = derive2 { name="miRNAtap"; version="1.4.0"; sha256="04ag91k3xa6gcmlgi2fr00p5247syn856n6jp3fhwhcn5pf5zd8y"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
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miRcomp = derive2 { name="miRcomp"; version="1.0.0"; sha256="1a0h7qx7b4ccry5xmgh6fwqandi9lhgnlf0gk1zj6dy9zbkiwhvl"; depends=[Biobase miRcompData]; };
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microRNA = derive2 { name="microRNA"; version="1.28.0"; sha256="14l7fjvapswyk8y690xll3w1yalwl5sqqh8v8xp5xy9qvb3qgiiz"; depends=[Biostrings]; };
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minet = derive2 { name="minet"; version="3.28.0"; sha256="16hddd2agqldpfjc4bxa1wm58pczni8b4d8kc09bx2dk5rr4bcg7"; depends=[infotheo]; };
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minfi = derive2 { name="minfi"; version="1.16.1"; sha256="0ddqkbgxrfiijz5xzjb566xwvzrwljjhfhylqzhmz8fnrvqydid8"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
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mirIntegrator = derive2 { name="mirIntegrator"; version="1.0.0"; sha256="004cy2l4li55nd8n4facfk30ndhm1vdxkdsk4zywg14hmn95ldgv"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; };
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missMethyl = derive2 { name="missMethyl"; version="1.4.0"; sha256="1hbh99ix20909f4mpc3czh8jyj970gi4bj04fcvra6fd8n40w1b4"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; };
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mitoODE = derive2 { name="mitoODE"; version="1.8.0"; sha256="1rbxppzwmlrfyzcsa5b0biqm79qyv9662dh16zzp3frz56325kzy"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; };
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mmnet = derive2 { name="mmnet"; version="1.8.1"; sha256="0ppcy11xnn593xig8gwz79vsbkdi3f5aai58zdhr59w52y2dafia"; depends=[Biobase biom flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; };
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mogsa = derive2 { name="mogsa"; version="1.2.1"; sha256="07jm5avdhan9mn0pdaq6vhxx7xaibs0sylnc3hfpns84d8rsf65b"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
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monocle = derive2 { name="monocle"; version="1.4.0"; sha256="1g1f5a433pq0zdjc9ymgbpdbxvixqjlkdm10vqs6gf4r511a3k76"; depends=[Biobase BiocGenerics cluster combinat fastICA ggplot2 HSMMSingleCell igraph irlba limma matrixStats plyr reshape2 VGAM]; };
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mosaics = derive2 { name="mosaics"; version="2.4.0"; sha256="13vl1grn08qy64971wimmc1j117l7fzxpcwnvaz0j5020m5m8qq7"; depends=[IRanges lattice MASS Rcpp]; };
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motifRG = derive2 { name="motifRG"; version="1.14.0"; sha256="1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; };
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motifStack = derive2 { name="motifStack"; version="1.14.0"; sha256="13s1y5xzkaapd53i33f8vdkdl5r4b8jzdyqrydanx35sgwn7fj1c"; depends=[ade4 Biostrings grImport MotIV scales XML]; };
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motifbreakR = derive2 { name="motifbreakR"; version="1.0.4"; sha256="1mwa070iqvq6qc0igvy5aivnqbipai1grccf1vz80al44pfx1w2v"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; };
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msa = derive2 { name="msa"; version="1.2.1"; sha256="0lj5x3zh5vp6j9s3h77iq0awy9v5n453hbqf3k8pasj6l5x0dmyj"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; };
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msmsEDA = derive2 { name="msmsEDA"; version="1.8.0"; sha256="0y9k03mpq5i6sa8dngadgcxi02ggka7n1rz54mll012gs6fzvyra"; depends=[gplots MASS MSnbase RColorBrewer]; };
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msmsTests = derive2 { name="msmsTests"; version="1.8.0"; sha256="1qkg7rhvfgpkq8v1avwffqc2v6afijwzw1myd17llmj6z8iyhy6j"; depends=[edgeR msmsEDA MSnbase qvalue]; };
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multiscan = derive2 { name="multiscan"; version="1.30.0"; sha256="0nl1pjg1x1rdfhn09c9nk96swsw3gph7bnd1lfj87024b4w1r50p"; depends=[Biobase]; };
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multtest = derive2 { name="multtest"; version="2.26.0"; sha256="1gpq2adj177fn8xf7gpiiq8khmcln90xif413j1fzpwjmjpzpb1v"; depends=[Biobase BiocGenerics MASS survival]; };
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muscle = derive2 { name="muscle"; version="3.12.0"; sha256="1bcyi2n1mpnp7b54lxj8g03rbjrawyr3isn211rb5m7r8jzpdvyw"; depends=[Biostrings]; };
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mvGST = derive2 { name="mvGST"; version="1.4.0"; sha256="1yi8558lkqfrmxgighb5v8q12gwqlbs2ds610fgf8ggrdn84bzq8"; depends=[annotate AnnotationDbi GO_db GOstats gProfileR graph Rgraphviz stringr topGO]; };
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mygene = derive2 { name="mygene"; version="1.6.0"; sha256="0przfr6y9svkj9dbih43hpi69wzs07r15q7w233pnmm2qhxylkf4"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; };
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myvariant = derive2 { name="myvariant"; version="1.0.1"; sha256="1xby50zw1250nvqbki1xccjcri8qz286mdzrm3fzfv63i8g4xwjq"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; };
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mzID = derive2 { name="mzID"; version="1.8.0"; sha256="1250kd8lrl4hnh8mvbl5hqbcszg3nynssdvjmy12wf0y0r9gjm8x"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
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mzR = derive2 { name="mzR"; version="2.4.1"; sha256="189dsr69p0yxqm9lwhqxd9i24f45hqywp8ncx535znv2dhs8v1rw"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; };
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ncdfFlow = derive2 { name="ncdfFlow"; version="2.16.1"; sha256="0r968wix53rwwqx60gl04a46c1pwfydi80gixbx147zv8lxmc5cx"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; };
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neaGUI = derive2 { name="neaGUI"; version="1.8.0"; sha256="1xms5k8zzbk31sj0f92rsqjv40vcqy89pmy8z3j0336iascqbx9l"; depends=[hwriter]; };
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nem = derive2 { name="nem"; version="2.44.0"; sha256="1bkq622jyrfn0v4wyw5ycxmri8kyils4wznsz26ki3awff34lq3h"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; };
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netbenchmark = derive2 { name="netbenchmark"; version="1.2.0"; sha256="10s8xsisjp9sj9dl67bgn94ipm6a6kpqli3pvjdpxkmvjkg400kg"; depends=[c3net corpcor fdrtool GeneNet grndata Matrix minet PCIT pracma randomForest Rcpp]; };
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netbiov = derive2 { name="netbiov"; version="1.4.0"; sha256="1h3986kfi516xlw675cq901ls9v7rj5rr0ls5lny21wd439n2avf"; depends=[igraph]; };
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nethet = derive2 { name="nethet"; version="1.2.0"; sha256="1p214bgjccigsvqcr0kv0ckv00zvkkpk2pfh9xvcb4kp6biqs94j"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; };
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netresponse = derive2 { name="netresponse"; version="1.20.15"; sha256="1mh3b5gjyh6nqif9qc45yy703vi4a4hi0szl6y6aazxd6fjqy98s"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; };
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networkBMA = derive2 { name="networkBMA"; version="1.12.0"; sha256="0zkf10iqiabsln1jxq0sypr43mrw6k82l3pdp5bg9kcv0bqqqy5k"; depends=[BMA Rcpp RcppArmadillo RcppEigen]; };
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nnNorm = derive2 { name="nnNorm"; version="2.34.0"; sha256="1wb85z0r0rwgaf1yzzlj1pcbgclz2isz9whxsify9jx8gfqflanh"; depends=[marray nnet]; };
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nondetects = derive2 { name="nondetects"; version="2.0.0"; sha256="0cyp7f90w9vcgwkg0mxrrpv28wihsgbynhq5kjk5hng9qfqjcyxg"; depends=[Biobase HTqPCR limma mvtnorm]; };
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npGSEA = derive2 { name="npGSEA"; version="1.6.0"; sha256="1vd02qwqv5rdkixi5ncqsxxy7zvr8qi4d6cms11fzwcmhisi1s4c"; depends=[Biobase BiocGenerics GSEABase]; };
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nucleR = derive2 { name="nucleR"; version="2.2.0"; sha256="0zhflv4nkn9dc2bdl81j9mjww6nh1mj6ffffy9cywvxzgpp2lc50"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
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nudge = derive2 { name="nudge"; version="1.36.0"; sha256="1px6hnda7hp7yx9imkl8xq8m772csd2qic0kq5bqwshk5qdvfhw7"; depends=[]; };
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occugene = derive2 { name="occugene"; version="1.30.0"; sha256="0p6pk7v75b4pbyxs1pglbsfprk4yi854d8aw41a1lwbmaphx5yyc"; depends=[]; };
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oligo = derive2 { name="oligo"; version="1.34.2"; sha256="0cv0vl8cj9n3la6n55qqlncyaxv072n6sdx8gp65prm6myp3ycgw"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
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oligoClasses = derive2 { name="oligoClasses"; version="1.32.0"; sha256="0gm4z4pa1hyrd9bdzncmkfhfywp3622wnyvhayhw7h17dw4gw94j"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
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omicade4 = derive2 { name="omicade4"; version="1.10.0"; sha256="1ay1jm0r8qyr9271l1aqnvm800pagd3j21m37qlv6xfjvv4j6w5f"; depends=[ade4 made4]; };
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oneChannelGUI = derive2 { name="oneChannelGUI"; version="1.36.0"; sha256="0r5y531y4niy9gh64n7nk8a0xcj8lyg36axhcjx116ycsqa00x5h"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; };
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ontoCAT = derive2 { name="ontoCAT"; version="1.22.0"; sha256="03vy4210m31jzhhhbhw3ixhm1lji4qil2zp0ckmyh3xb8m8s8fzl"; depends=[rJava]; };
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openCyto = derive2 { name="openCyto"; version="1.8.4"; sha256="1g23qia1ah2rjvz6clc9jfpb1sql2g1298bd8lard293ryvwpnhv"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
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oposSOM = derive2 { name="oposSOM"; version="1.6.0"; sha256="0wdh40477hn2875j0q4nj0l0h210jym4j642lkjlx8zvdx9jra29"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
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pRoloc = derive2 { name="pRoloc"; version="1.10.1"; sha256="1k9249g46gf6ar3q44zrg8v1lqxl81rljmn0c107rxck0rvdwaxn"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
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pRolocGUI = derive2 { name="pRolocGUI"; version="1.4.1"; sha256="14wmmhrdm5fgw8smxgdadd49ggaqnnqw7p65xn0kkj6yk87h3xrx"; depends=[DT MSnbase pRoloc pRolocdata scales shiny]; };
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|
paircompviz = derive2 { name="paircompviz"; version="1.8.0"; sha256="0q5saqpyfjx37d6l6vqfiws8n4axarfvb1qr010a3davhdz4kzn8"; depends=[Rgraphviz]; };
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|
pandaR = derive2 { name="pandaR"; version="1.2.0"; sha256="00wkzhkghzy04pg5qxgd2gmcmqgri20vgw8m08yfdymb918zgvyk"; depends=[igraph matrixStats]; };
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panp = derive2 { name="panp"; version="1.40.0"; sha256="0fmi5j7xr2720548k36njjk4ad4szma3zbqig4ghd1x2gg94wh7n"; depends=[affy Biobase]; };
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|
parglms = derive2 { name="parglms"; version="1.2.0"; sha256="1n1q838gv45daji04a0m0wc92a3xwhgf4asl7wbirk198ra3q7pj"; depends=[BatchJobs BiocGenerics doParallel foreach]; };
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|
parody = derive2 { name="parody"; version="1.28.0"; sha256="1srs2qyp7lwq9w19izszg3n9q0mlj634zlksb796v7608yp0y643"; depends=[]; };
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|
pathRender = derive2 { name="pathRender"; version="1.38.0"; sha256="0bc9xy1hka79bq0zw1faalsl89aibf7d77i7gv9jnmh66li9g1pa"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; };
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|
pathVar = derive2 { name="pathVar"; version="1.0.1"; sha256="1ixraifr8d86m9rdg38d6kfzmgghjxasgi3abb1i8knjyfwrc05v"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; };
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|
pathifier = derive2 { name="pathifier"; version="1.8.0"; sha256="08ipv1xcmxdb9g8h4dh4c7icwfp4myd9gwacb3cbl48libl459wj"; depends=[princurve R_oo]; };
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|
pathview = derive2 { name="pathview"; version="1.10.1"; sha256="0mpr9fqfp3ar927m6rvghn6ggbxp2ll2a9jfrz9ic44mbwpa1lb1"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; };
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|
paxtoolsr = derive2 { name="paxtoolsr"; version="1.4.6"; sha256="170gm5qxlsz2dv249q16shpj0xm9y7rp3rpn9ij6r2c5d3xn8i21"; depends=[data_table httr igraph plyr R_utils rJava rjson XML]; };
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|
pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.14.0"; sha256="1w0cpakxlm8dx6z3j844xmkz3dawiaschrjcjlkqjv9ay8vfkhz8"; depends=[AnnotationDbi Biostrings ellipse]; };
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|
pcaMethods = derive2 { name="pcaMethods"; version="1.60.0"; sha256="090bgl178zxj89d0kshwl5jkz8qszgdbwrfdbbawg8ka48bilw2l"; depends=[Biobase BiocGenerics MASS Rcpp]; };
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|
pcot2 = derive2 { name="pcot2"; version="1.38.0"; sha256="1ycsbry5srf1msq4vcvv0q34lgzkwadh7k1pgwv963i567i4lx3b"; depends=[amap Biobase]; };
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|
pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.34.1"; sha256="0dp1723hfkx0pc76b5xglqkxgvsh2iqqmx3sy9kyv7qcqgida14r"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
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|
pdmclass = derive2 { name="pdmclass"; version="1.42.0"; sha256="1f4zrxbyk49hm0cxp0g1786cwc7g1k5z6v3hn2z66m7rbapz8afy"; depends=[Biobase fibroEset mda]; };
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|
pepStat = derive2 { name="pepStat"; version="1.4.0"; sha256="0ys8nq2f5ajir4k8gdm02p26vzbhhk88ys8zc7zsqim3v4pxgdis"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; };
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|
pepXMLTab = derive2 { name="pepXMLTab"; version="1.4.0"; sha256="1fgq8x6c3lml12a92ihrkkvaph1xh90i01h15k42aadh3725a5nw"; depends=[XML]; };
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|
phenoDist = derive2 { name="phenoDist"; version="1.18.0"; sha256="0kjsdgvr5kmrnn7mjzphk5r6irgjv5cfgmrd4yddprbmmln39avn"; depends=[e1071 imageHTS]; };
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|
phenoTest = derive2 { name="phenoTest"; version="1.18.0"; sha256="1lgxacph4mv0z8c17lx4f82nvq151ggsfv5f9p35aw9z1pc10pwg"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; };
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|
phyloseq = derive2 { name="phyloseq"; version="1.14.0"; sha256="0h34ac577d2lzh6rzbvwz04ngp3v4c728z0nzf646ab10nfk1i17"; depends=[ade4 ape Biobase BiocGenerics biom Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; };
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|
piano = derive2 { name="piano"; version="1.10.2"; sha256="01ql6x020ai8aj6x89bsxixvv4q4fxsnyv87kxaw4p1hxcxqvybp"; depends=[Biobase BiocGenerics gplots igraph marray relations]; };
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|
pickgene = derive2 { name="pickgene"; version="1.42.0"; sha256="1awm471s2mx4w7m2p2bdz67rbgyz0khsa85bbrjcb4lbvljqwdv7"; depends=[MASS]; };
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|
pint = derive2 { name="pint"; version="1.20.0"; sha256="19q21b3zdn4adx49zn88z69xz3mqza58xdhig3zicn9s0g21bfz4"; depends=[dmt Matrix mvtnorm]; };
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|
pkgDepTools = derive2 { name="pkgDepTools"; version="1.36.0"; sha256="1v2fsax49wklwdmgxp9pjyp18cbj2rsg7yd68mwr2amlihgvmsp1"; depends=[graph RBGL]; };
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|
plateCore = derive2 { name="plateCore"; version="1.28.0"; sha256="1v7shvjnav930grswbixj8fyabmamsgry5g5is3sf9ymp9r8gh5x"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; };
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|
plethy = derive2 { name="plethy"; version="1.8.0"; sha256="1skaqws1yb8n8li4daprq4x8vrbyykm3fk6pzwx7iyr3nf2r2zz5"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; };
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|
plgem = derive2 { name="plgem"; version="1.42.0"; sha256="0nbiv4zbfiwa9mkpa2ldhnj3bi5nyrqcrzx1b54fcxsndrj9106i"; depends=[Biobase MASS]; };
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|
plier = derive2 { name="plier"; version="1.40.0"; sha256="0jlrxv79yg9w8yqlqqmswcrpk0ddw811qg142vbpd1alib35wrxi"; depends=[affy Biobase]; };
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|
plrs = derive2 { name="plrs"; version="1.10.0"; sha256="1f2dlgcbpfrn5za2z7nf1y8jzrcb5hzb3gix18nyqmz9syg57zha"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; };
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|
plw = derive2 { name="plw"; version="1.30.0"; sha256="190bccvxhdgp3ah9vzdpjddb33ck38r5x4gw1f8vwxh0mw79vf9c"; depends=[affy MASS]; };
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|
pmm = derive2 { name="pmm"; version="1.2.0"; sha256="1rsyh05w32gk2sip9hx1q93hwqwb1kmns47aq8qj2dw26ii0is3c"; depends=[lme4]; };
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|
podkat = derive2 { name="podkat"; version="1.2.0"; sha256="168piyx6c6vif771adm4594h6dq2h14g3jfk8lj2fvvdwyms2dn8"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
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|
polyester = derive2 { name="polyester"; version="1.6.0"; sha256="0if2rbgbfc3ghz5mnmpmpv6rq63qjm3l16gmlr493vfrpxdzclnv"; depends=[Biostrings IRanges limma logspline S4Vectors]; };
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|
ppiStats = derive2 { name="ppiStats"; version="1.36.0"; sha256="1s5xv565w924g71qaxgmhfszrkqs3arzi8l0vzcz446r2pgm6d32"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; };
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|
prada = derive2 { name="prada"; version="1.46.0"; sha256="0ak21586bbkbpwji1pcbr44dlwyhslscrqm2y172310xbxm0sqbg"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; };
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|
prebs = derive2 { name="prebs"; version="1.10.0"; sha256="06rbsza5gdv9k9hcaxx0k65p9w61kfxiw0p4ah23dqfx0mldh5nx"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; };
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|
predictionet = derive2 { name="predictionet"; version="1.16.0"; sha256="1q7nl11kvh2rl5rzb4qnq5ckdrdkna0arfnjmki35lr8hyh65id0"; depends=[catnet igraph MASS penalized RBGL]; };
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|
preprocessCore = derive2 { name="preprocessCore"; version="1.32.0"; sha256="07isghjkqm91rg37l1fzpjrbq36b7w4pbsi95wwh6a8qq7r69z1n"; depends=[]; };
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|
proBAMr = derive2 { name="proBAMr"; version="1.4.1"; sha256="1lk3jq113hpx315kmq0s9ll1m7x1s91gwdzm3db06509wp5ki881"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; };
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|
procoil = derive2 { name="procoil"; version="1.20.0"; sha256="11ss88jfk1j2b29l43qlvrlmhgxlfv1dw8wd9sqy3z3figspr3wz"; depends=[]; };
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|
prot2D = derive2 { name="prot2D"; version="1.8.0"; sha256="0pmsl550wvxnqx5zbj8b6lhvlb2bcmvi3xxx66x8r1sz3cdy3l7h"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; };
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|
proteinProfiles = derive2 { name="proteinProfiles"; version="1.10.0"; sha256="0hkimlq3v8hq3khinydm4m8v5fgld74vc6yg9yzhz71hv1yy2i2m"; depends=[]; };
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|
proteoQC = derive2 { name="proteoQC"; version="1.6.0"; sha256="15raykmw19k4yn4jppw4lqwgarr8b7sfsvhcif49xvw7k1dwj5ys"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; };
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|
puma = derive2 { name="puma"; version="3.12.0"; sha256="0in135rhfy5dx8q205rrcid63g5q6xh6w7rimz6a1brn89dviaba"; depends=[affy affyio Biobase mclust oligo oligoClasses]; };
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|
pvac = derive2 { name="pvac"; version="1.18.0"; sha256="1m4iqss2v7llyb2c6dsgajavxj9wf5d51k6l07qhqd25znrvml2l"; depends=[affy Biobase]; };
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|
pvca = derive2 { name="pvca"; version="1.10.0"; sha256="1lvd5l2lcw84hcmzzwgbii87s9xd6cvqxzbc78393jhmgi8aapk0"; depends=[Biobase lme4 Matrix vsn]; };
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|
pwOmics = derive2 { name="pwOmics"; version="1.2.0"; sha256="0vlr71mhch716xl2i0366pxjkawci0g2imvfhsqinv5gd92m6hpq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; };
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|
qcmetrics = derive2 { name="qcmetrics"; version="1.8.0"; sha256="0y5bi4162b93d02ksg1hpqlfx4inl6bmal84lhrrzra5k6zzv72m"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; };
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|
qpcrNorm = derive2 { name="qpcrNorm"; version="1.28.0"; sha256="0ywh6iq1bywcyw5v6iax1ngigii3s7d0f6gfj2xk9qwfxpavzjjf"; depends=[affy Biobase limma]; };
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|
qpgraph = derive2 { name="qpgraph"; version="2.4.2"; sha256="0np8d7rw182zncyxcvn0sq0linl7aqy1aw2yysb5w29g8cgd8m82"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
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|
qrqc = derive2 { name="qrqc"; version="1.24.0"; sha256="0850frx6fg9py2laav0yqavl9ckbn6y475xm9r6gxvyzp63smzdg"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; };
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|
quantro = derive2 { name="quantro"; version="1.4.0"; sha256="1vkm12h5b85h0db2sxv3c8hhxmgpdycllxr6d9zv2y4an1zhjkn5"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; };
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|
quantsmooth = derive2 { name="quantsmooth"; version="1.36.0"; sha256="0gfqvx6djy0sl0dz1la19wzc6nfbazrw28wrpf1b934gfbjii25d"; depends=[quantreg]; };
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|
qusage = derive2 { name="qusage"; version="2.2.2"; sha256="1pc9n8nfxgdc5xw3jhpvv05yijwwk2f9i7ssjxwgnc8mczrzv8b9"; depends=[Biobase limma lsmeans nlme]; };
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|
qvalue = derive2 { name="qvalue"; version="2.2.2"; sha256="0zfip08aacy80cc6xx04789k46nghzdxj8dbsgixvvhwhg2vxy1n"; depends=[ggplot2 reshape2]; };
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|
r3Cseq = derive2 { name="r3Cseq"; version="1.16.0"; sha256="0zjxqmj1lblxcl73cisacjacdmw9aj4wvr5lxdn9b4kq6rcr7ljn"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; };
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|
rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.8.0"; sha256="1akmgiqgi53d1264mmhkizn0g1fvjvqdgzsrw9yx26xi9ysmq9kg"; depends=[data_table XML]; };
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|
rCGH = derive2 { name="rCGH"; version="1.0.2"; sha256="07mbhgyjjmlyv0237gccd04hjxf22qw7nx5g71ijxj4mb22igign"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg19_knownGene]; };
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|
rGADEM = derive2 { name="rGADEM"; version="2.18.0"; sha256="1aib9qqvbq9myyngxlmv494i7pr96k4p9rmrnc4drxa9zhh0pp5a"; depends=[Biostrings BSgenome IRanges seqLogo]; };
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|
rGREAT = derive2 { name="rGREAT"; version="1.2.0"; sha256="00gjlsgz3mac48qdpgxk0vvn5z454m2lcxm6lha8jby73pls9hh3"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; };
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|
rHVDM = derive2 { name="rHVDM"; version="1.36.0"; sha256="0k1gccnac59q54y2nypzgip2srs5yg3v2hhrz86ps50p2lx4pqd2"; depends=[affy Biobase minpack_lm R2HTML]; };
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|
rMAT = derive2 { name="rMAT"; version="3.20.0"; sha256="0dq4ipz1j6qai8q8z038hjb5j0w67gp7449vj8psgca2854gxa7s"; depends=[affxparser Biobase BiocGenerics IRanges]; };
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|
rRDP = derive2 { name="rRDP"; version="1.4.0"; sha256="101g3j8r8h0nc69k0srlwkxld4qd99ww8xf5b34sm015hvhfx55k"; depends=[Biostrings]; };
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|
rSFFreader = derive2 { name="rSFFreader"; version="0.18.0"; sha256="0z2lkjbs3svx1b9zr4smjwrcd9xzxhfp98428vzaqq0k79h1v666"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; };
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|
rTANDEM = derive2 { name="rTANDEM"; version="1.10.0"; sha256="1dmaqdjfmjkkrddf666hpp95s7s6x0ssinx9aybl6952ylfjgcd1"; depends=[data_table Rcpp XML]; };
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|
rTRM = derive2 { name="rTRM"; version="1.8.1"; sha256="0hy2wxlclbgw48gizm6l2c65x81s17qh4l7751h00yw0995l4dsq"; depends=[AnnotationDbi DBI igraph RSQLite]; };
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|
rTRMui = derive2 { name="rTRMui"; version="1.8.0"; sha256="1mbljb86k3vhiavcv4fvibj6fykg65p4nh7wrrm1nxz90k5hbznp"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; };
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|
rain = derive2 { name="rain"; version="1.4.0"; sha256="0nldnsy6x91nv3i24gj81yxmrr7d4j7iicqxy279gh1k5zh5l5r1"; depends=[gmp multtest]; };
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|
rama = derive2 { name="rama"; version="1.44.0"; sha256="0nka6a2dk7jn4lk0i2p91hxwdgpny6y3j4dz709crrxlz3xjqflm"; depends=[]; };
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|
randPack = derive2 { name="randPack"; version="1.16.0"; sha256="1i7rr4pid1yw5fjjlwcd0zy46z3c351vxqsj2z8mycl8cm29n8zn"; depends=[Biobase]; };
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|
rbsurv = derive2 { name="rbsurv"; version="2.28.0"; sha256="0pz7rza3j7yrdjp1q35y7xxhmkq9cvfg4ippgqqkny8qyayhy7bm"; depends=[Biobase survival]; };
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rcellminer = derive2 { name="rcellminer"; version="1.2.3"; sha256="1z91vk4bks47z2mypg8lg2qqxqwyggp7jykv7xl92msarqnz4izc"; depends=[Biobase fingerprint gplots rcdk rcellminerData shiny stringr]; };
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|
reb = derive2 { name="reb"; version="1.48.0"; sha256="1bxijf91vdr6088459r29kvy691bjbscy170pc0739iqbg7z80zm"; depends=[Biobase idiogram]; };
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|
regionReport = derive2 { name="regionReport"; version="1.4.1"; sha256="1sh6m6ly2r3lxvx6q6rb05ygd4c5ab7lzh4j6hpy5va3mg7prrgr"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; };
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|
regioneR = derive2 { name="regioneR"; version="1.2.3"; sha256="0sf2j51ibmv38v19wg4anawwnini442hd30k7yvi3byqhs598jpn"; depends=[BSgenome GenomicRanges memoise rtracklayer]; };
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|
rfPred = derive2 { name="rfPred"; version="1.8.0"; sha256="09sc9y6pyw96piaqh33rzf94ryclknbhqig1fp36d3zabfj8a91i"; depends=[data_table GenomicRanges IRanges Rsamtools]; };
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|
rgsepd = derive2 { name="rgsepd"; version="1.2.0"; sha256="0djx0fm44fj6k8dq4ysqag93icnymm2b38asgplds8y6fv9gp39b"; depends=[AnnotationDbi biomaRt DESeq2 GenomicRanges GO_db goseq gplots hash org_Hs_eg_db]; };
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|
rhdf5 = derive2 { name="rhdf5"; version="2.14.0"; sha256="0cxg8w3244gcifvc27dm85wip776x5lnwkl7qhc7w92if57z7wcp"; depends=[zlibbioc]; };
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|
riboSeqR = derive2 { name="riboSeqR"; version="1.4.0"; sha256="1i9p9hxh2sipgpa1wf59pfs3h0qprr473axlvzw7f0yx171qimfg"; depends=[abind GenomicRanges]; };
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|
rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.28.0"; sha256="0mfcy7l31g5z5yv12sv9imaf19p9vawnk7cqcm50x2sm032r8n7f"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; };
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|
rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.0.2"; sha256="0m22q75fyzwyxn6s58sjyzqyzp5rb808fvvck8vljnqghcflbybc"; depends=[RColorBrewer]; };
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roar = derive2 { name="roar"; version="1.6.1"; sha256="13730bs9k37brga57yy24m2q323i1676qlk7fnlg8c6hm151bq2q"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
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|
rols = derive2 { name="rols"; version="1.12.2"; sha256="0bfgd346kxbb4wkhnhfpgkv33fm7p63pldvjj28sxal88g14n22r"; depends=[Biobase XML]; };
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ropls = derive2 { name="ropls"; version="1.2.14"; sha256="1b6k2c9i263m83jhvhcv65daa1gjyrra5hvmm9fm26h829g16y4l"; depends=[]; };
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|
rpx = derive2 { name="rpx"; version="1.6.0"; sha256="04kd9kn7k8fswpy03ccbaq6glwxiilvklyygj9gmi2sam06q9d6i"; depends=[RCurl XML]; };
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|
rqubic = derive2 { name="rqubic"; version="1.16.0"; sha256="0gasrkxpbvhxig6n3k3n9hdid9cg4gnkffyi9xn2zl33zm8wyirf"; depends=[biclust Biobase BiocGenerics]; };
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|
rsbml = derive2 { name="rsbml"; version="2.28.0"; sha256="0fzn7vpfsfb3k0j6mid0prrgdaqsv8b3945d0ynls8jgp02ma6hs"; depends=[BiocGenerics graph]; };
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|
rtracklayer = derive2 { name="rtracklayer"; version="1.30.3"; sha256="0b1zkan1qv07bhbwrgsggg2zscqvrngi3j072pqfj1804b308xv4"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
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|
sRAP = derive2 { name="sRAP"; version="1.10.0"; sha256="080s88l3a2fbgqnc8sy41kwzkm6skjazkirqini7n6xqcsqb9lih"; depends=[gplots pls qvalue ROCR WriteXLS]; };
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|
sSeq = derive2 { name="sSeq"; version="1.8.0"; sha256="1l05qm3576fx9v5bxvc0xm4916bzfvh1f4nnjdm67z82qxbx4wnz"; depends=[caTools RColorBrewer]; };
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|
safe = derive2 { name="safe"; version="3.10.0"; sha256="17ryzq2rc8hdmj1kzv62kzh1pn2nb454d73mdd5dk6qy0pgg4fan"; depends=[AnnotationDbi Biobase SparseM]; };
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|
sagenhaft = derive2 { name="sagenhaft"; version="1.40.0"; sha256="1y2fa861k9b9rb6hr0slvf5pgqwggssx7ppn1ddrh0yw53vk7dwy"; depends=[SparseM]; };
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|
sangerseqR = derive2 { name="sangerseqR"; version="1.6.0"; sha256="0jfh1jgvazi43bvj8m3546yh5vs0nhvnw7mmd68zndihm5agxhb1"; depends=[Biostrings shiny]; };
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sapFinder = derive2 { name="sapFinder"; version="1.8.0"; sha256="12a0wcjxcz77b06bymhqcj5wxzm478mlj9vcvbbqhdfvj7214hy9"; depends=[pheatmap Rcpp rTANDEM]; };
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|
saps = derive2 { name="saps"; version="2.2.0"; sha256="11v7nxlcnkslxl0giv3y2naxpfsmqmrj6b4y2g6zbp48zml45jgl"; depends=[piano reshape2 survcomp survival]; };
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|
savR = derive2 { name="savR"; version="1.8.0"; sha256="1vxxmzr8k6fn9fqr0pbfvccqq30d8w3fwjcr5x0bh1d77mzgf9n1"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
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|
sbgr = derive2 { name="sbgr"; version="1.0.0"; sha256="0bvvxd0c4k4mmwkcb9w02i2kb6vwlq84w8vfqiamnwjy2vgjgka9"; depends=[httr jsonlite objectProperties]; };
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|
scsR = derive2 { name="scsR"; version="1.6.0"; sha256="0g1vgx8wrdwbhlzmf0a11fg5jnbkvz402h8qj48vj4bq8j202bc1"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; };
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|
segmentSeq = derive2 { name="segmentSeq"; version="2.4.0"; sha256="0dbw8kssi2l6mnvjh7skbxc0akyha2wpa0r6ixw73p4g5qbaqafn"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; };
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|
seq2pathway = derive2 { name="seq2pathway"; version="1.2.0"; sha256="1xki7wsydgagsh3fx9gwdd2asrbm6q9gnh27bv2cyrmjpp0nkjg1"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; };
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|
seqCNA = derive2 { name="seqCNA"; version="1.16.0"; sha256="1wq92wszv0x99l52lm3k0zc2ffin1sp78xlyfabxpwi1v0yrkifl"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; };
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|
seqLogo = derive2 { name="seqLogo"; version="1.36.0"; sha256="0kn1a1nf2j4v9c09vjkz9bmxlln7yhg87bnyrdsxy1m55x56rn5k"; depends=[]; };
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|
seqPattern = derive2 { name="seqPattern"; version="1.2.0"; sha256="0p9zj6bic7sa0hb2bjm988kkk5n9r1kvlbqkzvy702f642n0j53i"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; };
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|
seqTools = derive2 { name="seqTools"; version="1.4.1"; sha256="19hxakskh3qa9ypp2nmly3mrlbjfrq2ya5f5gyhg4mv0vahm9yc8"; depends=[zlibbioc]; };
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|
seqbias = derive2 { name="seqbias"; version="1.18.0"; sha256="1wwskcbl3wd8gl63jl4wl0xwzj8kbwbc8xhp12z3xximngkk7dgd"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; };
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|
seqplots = derive2 { name="seqplots"; version="1.8.0"; sha256="1kk914pc462n37gmma6l1d0kcrw2qqgkd3sb67mrx053h1n0lz35"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 RSQLite rtracklayer S4Vectors shiny]; };
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|
shinyMethyl = derive2 { name="shinyMethyl"; version="1.4.0"; sha256="1db4g2sgfgr21hh3xcpv8lcnmrqgwfrj97dlpi8blqcs81mrhc3s"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; };
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|
shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.8.0"; sha256="0dkgwfynznpq2q55d83w4x0nmal3dkgzxi1jpdcsasqlhsyqvmvx"; depends=[mixtools rTANDEM shiny xtable]; };
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|
sigPathway = derive2 { name="sigPathway"; version="1.38.0"; sha256="126cyw88d6rxp3bzdqsmm2v0kvhn650qmi4zcs9v50n0hhwyrxrf"; depends=[]; };
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sigaR = derive2 { name="sigaR"; version="1.14.0"; sha256="07ip468liyg9b6q9izd1wdp29p9f2icfs01nf0il4gc76h6d0rr5"; depends=[Biobase CGHbase corpcor igraph marray MASS mvtnorm penalized quadprog snowfall]; };
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|
siggenes = derive2 { name="siggenes"; version="1.44.0"; sha256="18r1yqaq2ppa00vwgwdbla3sq4rcsr3d1jrjdbq0p17dan5f9dqz"; depends=[Biobase multtest]; };
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|
sigsquared = derive2 { name="sigsquared"; version="1.2.0"; sha256="1mgm84fdkzjp7hp3kp98l8g64mc3dg1cih2z9svmpcryp5fyxjvc"; depends=[Biobase survival]; };
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|
similaRpeak = derive2 { name="similaRpeak"; version="1.2.0"; sha256="024nr8imqp4vrrhfikn00kv9cx3sg1h862dmgvylbkmjmm4f2mr8"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; };
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|
simpleaffy = derive2 { name="simpleaffy"; version="2.46.0"; sha256="1x3f7hm7w44yarq4irv791330zfamhsqqwnqz8xfwrpvjrkv6avn"; depends=[affy Biobase BiocGenerics gcrma genefilter]; };
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|
simulatorZ = derive2 { name="simulatorZ"; version="1.4.0"; sha256="1sypvrwq6ay7lzmb9cmpix1zgzafzryvf4my5jky846bcpam91qj"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; };
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|
sincell = derive2 { name="sincell"; version="1.2.0"; sha256="1qmjy9cwhnyg4s3jfzi0z0yfdza4dma0q6h73772mhh2l4q149h7"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; };
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sizepower = derive2 { name="sizepower"; version="1.40.0"; sha256="0wl1fvldarg85gg4i6xmh2ssma2hdqddd3lp7x13r2322344gmxl"; depends=[]; };
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skewr = derive2 { name="skewr"; version="1.2.0"; sha256="0kmlgv1j104dnlbvg00jsbcdhr60l83dabfrzggvx7s9aspwgp30"; depends=[IlluminaHumanMethylation450kmanifest IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; };
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|
snapCGH = derive2 { name="snapCGH"; version="1.40.0"; sha256="0fjqp0qhwk041pgwqp3av5ihkf4xb9li6zy6gmvk24hlj8sm600z"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; };
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|
snm = derive2 { name="snm"; version="1.18.0"; sha256="150lwwk6cyhwjypb4f3gsmhpiv4vcayip7gpl2vxfmvhg03yqbyl"; depends=[corpcor lme4]; };
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|
snpStats = derive2 { name="snpStats"; version="1.20.0"; sha256="16j3qq9vqswgra5xkm1ykwzcf8gxy7f7xa0l0z08n36hv7d0zd6x"; depends=[BiocGenerics Matrix survival zlibbioc]; };
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|
soGGi = derive2 { name="soGGi"; version="1.2.1"; sha256="11ksx2z9vkz1d39fhds7cadwr0mzicis5nizj6qyzmzlybyc8v72"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
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|
spade = derive2 { name="spade"; version="1.18.2"; sha256="0m2784x2ysp4mc7m8n8scpr1h38m3p9glcc5jd6cix55bh3yzykk"; depends=[Biobase flowCore igraph Rclusterpp]; };
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|
specL = derive2 { name="specL"; version="1.4.0"; sha256="0i7j5bzvlsyy72xg2gcxggrz25ln3287gcd433mwyiira4apz1il"; depends=[DBI protViz Rcpp RSQLite seqinr]; };
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|
spikeLI = derive2 { name="spikeLI"; version="2.30.0"; sha256="0xqqwxhb89ngfr9jz3z3wsmq8l6lky4hcjnqvf9qd1cwjkf51am9"; depends=[]; };
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|
spkTools = derive2 { name="spkTools"; version="1.26.0"; sha256="0aznmn9si99x32kn2x5swhpahp96bsg71i1wizml0ni6lvmbxn0j"; depends=[Biobase gtools RColorBrewer]; };
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|
spliceR = derive2 { name="spliceR"; version="1.12.0"; sha256="0r5j0ibl2ccsxb7rr2fxw4b07wbdiyfndxkl4pgd9h0ks4qyhyjy"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; };
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|
spliceSites = derive2 { name="spliceSites"; version="1.8.3"; sha256="1jifh0nbqjhrc07jfc50hfk4wn1hv3a863rbr3fnqlg9rwg044w7"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; };
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|
splicegear = derive2 { name="splicegear"; version="1.42.0"; sha256="1g2fqql1wqzwz1vx5cq03ckld0gccqk6rv9l99xsaa8mhf0rn1qa"; depends=[annotate Biobase XML]; };
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|
splots = derive2 { name="splots"; version="1.36.0"; sha256="1cj8bygsv1g91cypdz2zbf2slirls7sqdxrvg6qka0n8las58sxd"; depends=[RColorBrewer]; };
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|
spotSegmentation = derive2 { name="spotSegmentation"; version="1.44.0"; sha256="074nzh18pj6dpk9bqh8id0j2vpaxvhi2ddrz6hnza381wzdgxdr3"; depends=[mclust]; };
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|
sscore = derive2 { name="sscore"; version="1.42.0"; sha256="0h86crb241vmaczp76wz4zv9ni1snmlkrdi1md3hgq1hqxnn9gzs"; depends=[affy affyio]; };
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|
ssize = derive2 { name="ssize"; version="1.44.0"; sha256="1aaafnj114j2zwf88y2133md6b33dsl88rg1zq0ql2xs4cxvsgkz"; depends=[gdata xtable]; };
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|
ssviz = derive2 { name="ssviz"; version="1.4.0"; sha256="0j4c5b2ivz6l6a3by9hgy59r9z4s854pgias6sabp4qzpqgc3655"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; };
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|
staRank = derive2 { name="staRank"; version="1.12.0"; sha256="1vgc3mhxyhrgwkapnqx4061l9l0nyc012508hma14xbxml3f76sg"; depends=[cellHTS2]; };
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stepNorm = derive2 { name="stepNorm"; version="1.42.0"; sha256="0kvpfiq6w1vksw6dqjx0kw46rrfafpfs9ii8bwp1kk3q84zmyrmm"; depends=[marray MASS]; };
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|
stepwiseCM = derive2 { name="stepwiseCM"; version="1.16.0"; sha256="1ss79yr75kw7fsd8ihpivj9k5v32zxr3ymkl6prba0nyxdj5wyz9"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; };
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|
subSeq = derive2 { name="subSeq"; version="1.0.1"; sha256="1k7d3hdiqxdv3mn61gr9rxsqywh2xgj2l8r4806j8b05vyi1ybdk"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; };
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|
supraHex = derive2 { name="supraHex"; version="1.8.0"; sha256="1g2zcarzi805y2933pyjdgg7l9imbhdf4pjhyr8bir0149li98cy"; depends=[ape hexbin MASS]; };
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|
survcomp = derive2 { name="survcomp"; version="1.20.0"; sha256="174kh5cnbw1dg109wrzbf4xhslzn56fag4d3nxwswxinrdz360i9"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
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|
sva = derive2 { name="sva"; version="3.18.0"; sha256="0jx4ar4nj8fgmrbhlaz6zm04zmcaacrakyzyy5hi2dgsy025c86c"; depends=[genefilter mgcv]; };
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|
switchBox = derive2 { name="switchBox"; version="1.4.0"; sha256="0lmrg3ahjmz7x3ngjmhkb2w6n2zv0lw40xq1f9lhiyzqzj23rri0"; depends=[]; };
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|
synapter = derive2 { name="synapter"; version="1.12.0"; sha256="0mrqbfg4kwwzm7g2sp1py715w52268kzlkhylqmr1cjqi20b0gb7"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; };
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|
synlet = derive2 { name="synlet"; version="1.0.0"; sha256="05vxkzafgri9ppscv5ark65s15fn3g4lfnkv25ryfddflcfkl1n2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; };
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|
systemPipeR = derive2 { name="systemPipeR"; version="1.4.8"; sha256="09f41q8bnznmrfqwfjfd6h6p6xx20qg1l06dxjajbc0did1fblfz"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
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|
tRanslatome = derive2 { name="tRanslatome"; version="1.8.0"; sha256="0kblzs5x5bh2bqg5bd5c33b405r33aicba0x0ky02vvqsld64f6l"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; };
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|
ternarynet = derive2 { name="ternarynet"; version="1.14.0"; sha256="0c25xinnlvafwf1x08zmcm1agwflvs9jpckhq58dc5fs8jb4zi6y"; depends=[igraph]; };
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|
tigre = derive2 { name="tigre"; version="1.24.2"; sha256="0fk73fmqf7d2pb6m5l78rslxh211zzsl9g3snn4507rfxvivcz11"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
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|
tilingArray = derive2 { name="tilingArray"; version="1.48.0"; sha256="0ac78mqmjr8wv7zw6rk6q7bxwfmvycsmgybqg4xayja01qvmwkji"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; };
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|
timecourse = derive2 { name="timecourse"; version="1.42.0"; sha256="01awyngw9qalsvagn1f51kdhkqfvscnfhlp50xndr3s2zmmra5xg"; depends=[Biobase limma marray MASS]; };
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|
tkWidgets = derive2 { name="tkWidgets"; version="1.48.0"; sha256="1a4j66pyhyns4mi5dfjqym4kd7dardhvhpr6r4ip34dc1b98hcg1"; depends=[DynDoc widgetTools]; };
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|
topGO = derive2 { name="topGO"; version="2.22.0"; sha256="029j9nb39b8l9xlzsp83pmjr8ap247aia387yzaa1yyw8klapdaf"; depends=[AnnotationDbi Biobase BiocGenerics GO_db graph lattice SparseM]; };
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|
trackViewer = derive2 { name="trackViewer"; version="1.6.1"; sha256="12n4rnph5viy0n45v6fl4b473dq71gqqz34hapnav13csy5nxc4i"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges pbapply Rsamtools rtracklayer scales]; };
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|
tracktables = derive2 { name="tracktables"; version="1.4.2"; sha256="1zb51wll7p9kw1q0wnir3gggqxr9p5mc30kk59vjl14apfpbx1vp"; depends=[GenomicRanges IRanges ore RColorBrewer Rsamtools stringr XML XVector]; };
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|
traseR = derive2 { name="traseR"; version="1.0.0"; sha256="03lqmnb2fann1fn42kr2k126ppgkb5rw7n25h908hmq200mfl122"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; };
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|
triform = derive2 { name="triform"; version="1.12.0"; sha256="0pqfz6msalr2264iwi2hzam2sv8yl4fy1ri72pff5gh14rbxgiml"; depends=[BiocGenerics IRanges yaml]; };
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|
trigger = derive2 { name="trigger"; version="1.16.0"; sha256="1lswb0zdxkc37xkpyp65md4bv81njl74y6cl3dp9ym5mf47l5azg"; depends=[corpcor qtl qvalue sva]; };
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|
trio = derive2 { name="trio"; version="3.8.0"; sha256="066401wayzl09p9g10j8vl9nhk57351ll1rf28c8ix4kh50pszi5"; depends=[]; };
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|
triplex = derive2 { name="triplex"; version="1.10.0"; sha256="1k9dr5bdrbqgxjs1dwha7xxaas3cfhpfi75pykq7hhmxip6bcsp5"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; };
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|
tspair = derive2 { name="tspair"; version="1.28.0"; sha256="0m083g5z77n7dd4lnbhvbwjkykh7a4pl4v8j7ipr5w7f9dhdjk33"; depends=[Biobase]; };
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|
tweeDEseq = derive2 { name="tweeDEseq"; version="1.16.0"; sha256="0dyhczzfbp99nd2ia78scyzw8d02hrwaqr1pqj1c038mm6vsldvb"; depends=[cqn edgeR limma MASS]; };
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|
twilight = derive2 { name="twilight"; version="1.46.0"; sha256="1v3aghnmx1g8kn1z98fx8k71gh2g9q1x52x3lhx70wkzcn6phphd"; depends=[Biobase]; };
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|
unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.6.0"; sha256="0iiwaihywibrfkiayp9dciv9i5n1j13ildwhaxilrha2qdmmjxqm"; depends=[BiocGenerics HTqPCR]; };
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|
variancePartition = derive2 { name="variancePartition"; version="1.0.7"; sha256="10hdxhl4bm1ky5cjiafgbc63aalh75d6ii16gllw0kd4agp2xxfx"; depends=[Biobase dendextend doParallel foreach ggplot2 iterators limma lme4 reshape2]; };
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|
vbmp = derive2 { name="vbmp"; version="1.38.0"; sha256="075hp0bb66fjda8bzhgcmxjhlrncwfwqrzsm885ci928yrl4fyjw"; depends=[]; };
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|
viper = derive2 { name="viper"; version="1.6.1"; sha256="1jmddpbfwnhc9spblr38qljhrzzkc8r2l26h58b996wjrh0x75gh"; depends=[Biobase e1071 KernSmooth mixtools]; };
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|
vsn = derive2 { name="vsn"; version="3.38.0"; sha256="17l1wywbm99g4n08m6wasx59wfavjas0f03a87a1pdv8ff4i71ac"; depends=[affy Biobase ggplot2 hexbin lattice limma]; };
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|
vtpnet = derive2 { name="vtpnet"; version="0.10.0"; sha256="1qvg9f8qa64rpdqv575b7zadf4j1hs5ijhpjk4qjb8h7z5xprr7s"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
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|
wateRmelon = derive2 { name="wateRmelon"; version="1.10.0"; sha256="1hcfxiiwk0f7i59aj7v55403m755cwfldwniif8x9kkr1xm2n8jh"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 limma lumi matrixStats methylumi ROC]; };
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|
wavClusteR = derive2 { name="wavClusteR"; version="2.4.1"; sha256="0j0cy5bi8pacc6bhy0prlv446m2kgxyjnd5r3vw2lxc1ygllxn6h"; depends=[Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer seqinr stringr wmtsa]; };
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|
waveTiling = derive2 { name="waveTiling"; version="1.12.0"; sha256="0j866mgxj44mv4wp0yqnav83w8pfb47lmjhp1y0qqvxc6q9k80g8"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; };
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|
weaver = derive2 { name="weaver"; version="1.36.0"; sha256="0ixs723mh9p1pq6za8xjqknbq1jq4ylcxsv08f40izmlp40mxjdx"; depends=[codetools digest]; };
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|
webbioc = derive2 { name="webbioc"; version="1.42.0"; sha256="1xli6q0d9y2wikqxk3cf2am3plfk5c27w95q607brs6kl3ghlafl"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; };
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|
widgetTools = derive2 { name="widgetTools"; version="1.48.0"; sha256="0gwx02bqpfppmk34vh5qfax9bid7854dbapgdnzz32xzhamk64a8"; depends=[]; };
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|
xcms = derive2 { name="xcms"; version="1.46.0"; sha256="0hhw86xkd3z7liyivj1ssdd7z8q1m91jplni8ags1sify46fh57p"; depends=[Biobase BiocGenerics lattice mzR ProtGenerics RColorBrewer]; };
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|
xmapbridge = derive2 { name="xmapbridge"; version="1.28.0"; sha256="0b7l9gr1qrjj8fg9mcb3xyaw3s3zk8k2d46l9bgsl6g0xz79j615"; depends=[]; };
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|
xps = derive2 { name="xps"; version="1.30.0"; sha256="0wh98fsj3j368bxk4wa7rjd3acwl04r1dfiy13a89zv1fzv3wvky"; depends=[]; };
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|
yaqcaffy = derive2 { name="yaqcaffy"; version="1.30.0"; sha256="1pj2ksqbj7dlc76s6qagi7iq35wa83gx5cp0hm42w3bj7mxprjbi"; depends=[simpleaffy]; };
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|
zlibbioc = derive2 { name="zlibbioc"; version="1.16.0"; sha256="01wc26ndg4jsn1wyrl6zzq636gxaip5fci0xapym4lh9wryc4wnw"; depends=[]; };
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|
}
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