35 lines
1019 B
Nix
35 lines
1019 B
Nix
{ stdenv, fetchurl, hmmer, perl }:
|
|
|
|
stdenv.mkDerivation rec {
|
|
version = "1.1.1";
|
|
pname = "itsx";
|
|
|
|
src = fetchurl {
|
|
url = "http://microbiology.se/sw/ITSx_${version}.tar.gz";
|
|
sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31";
|
|
};
|
|
|
|
buildInputs = [ hmmer perl ];
|
|
|
|
buildPhase = ''
|
|
sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx
|
|
sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx
|
|
mkdir bin
|
|
mv ITSx bin
|
|
'';
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/share/doc && cp -a bin $out/
|
|
cp *pdf $out/share/doc
|
|
cp -r ITSx_db $out/share
|
|
'';
|
|
|
|
meta = with stdenv.lib; {
|
|
description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing";
|
|
homepage = "https://microbiology.se/software/itsx/";
|
|
license = licenses.gpl3;
|
|
maintainers = [ maintainers.bzizou ];
|
|
platforms = [ "x86_64-linux" "i686-linux" ];
|
|
};
|
|
}
|