| .. |
|
ants
|
treewide: avoid use of lib.optional with list in inputs
|
2021-10-04 13:02:42 -04:00 |
|
aragorn
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
bayescan
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
bcftools
|
bcftools: 1.13 -> 1.14
|
2021-10-29 02:49:14 +00:00 |
|
bedops
|
bedops: 2.4.39 -> 2.4.40
|
2021-07-23 01:02:40 +00:00 |
|
bedtools
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
bftools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
blast
|
blast: 2.11.0 -> 2.12.0
|
2021-09-15 15:33:44 +00:00 |
|
bowtie
|
bowtie: 1.3.0 -> 1.3.1
|
2021-09-15 07:35:44 +00:00 |
|
bowtie2
|
bowtie2: 2.4.4 -> 2.4.5
|
2022-01-23 22:45:59 +00:00 |
|
bppsuite
|
|
|
|
bwa
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
cd-hit
|
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
|
2021-08-02 20:05:00 +03:00 |
|
clustal-omega
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
cmtk
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
conglomerate
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
dcm2niix
|
dcm2niix: 1.0.20210317 -> 1.0.20211006
|
2021-10-29 09:34:20 +00:00 |
|
deeptools
|
deeptools: 3.5.0 -> 3.5.1
|
2022-01-21 05:36:24 +00:00 |
|
delly
|
delly: 0.8.7 -> 0.9.1
|
2021-11-25 21:19:48 +11:00 |
|
diamond
|
diamond: switch to fetchFromGitHub
|
2021-12-23 19:11:17 +01:00 |
|
ecopcr
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
eggnog-mapper
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
|
emboss
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
est-sfs
|
est-sfs: fix darwin build
|
2021-05-15 12:10:05 +02:00 |
|
exonerate
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
|
EZminc
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
|
fastp
|
fastp: 0.23.1 -> 0.23.2
|
2021-12-02 08:03:17 +11:00 |
|
freebayes
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
genmap
|
genmap: init 1.3.0
|
2021-12-04 06:51:16 +11:00 |
|
hisat2
|
hisat2: update homepage
|
2022-02-06 15:10:53 +01:00 |
|
hmmer
|
hmmer: restrict platforms to x86_64
|
2021-11-20 19:17:57 +00:00 |
|
igv
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
inormalize
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
itsx
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
iv
|
pkgs/applications: rename name to pname&version part 2
|
2021-11-07 14:53:06 +01:00 |
|
kallisto
|
kallisto: 0.46.2 -> 0.48.0
|
2022-01-31 09:53:54 -08:00 |
|
kent
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
kssd
|
kssd: switch to fetchFromGitHub
|
2021-12-23 19:11:17 +01:00 |
|
last
|
last: 1179 -> 1256
|
2021-10-19 13:23:14 +11:00 |
|
MACS2
|
macs2: init at 2.2.7.1
|
2021-04-14 10:17:53 -04:00 |
|
macse
|
treewide: convert phases that contain ":" to dont* = true (#130500)
|
2021-07-18 23:42:48 +02:00 |
|
manta
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
megahit
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
meme-suite
|
meme-suite: init at 5.1.1 (#118603)
|
2021-04-05 22:43:27 +02:00 |
|
messer-slim
|
messer-slim: 3.6 -> 3.7
|
2021-12-30 20:32:56 +00:00 |
|
migrate
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
|
minc-tools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
minc-widgets
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
minia
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
minimap2
|
minimap2: 2.23 -> 2.24
|
2022-01-17 08:49:35 +01:00 |
|
mni_autoreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
mosdepth
|
mosdepth: convert to buildNimPackage
|
2021-09-05 11:20:02 +02:00 |
|
mrbayes
|
mrbayes: 3.2.7 -> 3.2.7a
|
2021-07-27 14:30:23 +02:00 |
|
mrtrix
|
mrtrix: 3.0.2 -> unstable-2021-11-25
|
2021-11-30 21:03:53 -08:00 |
|
muscle
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
N3
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
ncbi-tools
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
|
neuron
|
treewide: ensure pre/post phase hooks are strings
|
2021-08-20 19:08:42 -04:00 |
|
niftyreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
niftyseg
|
niftyseg: switch to fetchFromGitHub
|
2021-12-23 19:11:17 +01:00 |
|
obitools
|
obitools3: removed useless python restriction
|
2021-11-08 07:51:48 +01:00 |
|
octopus
|
octopus: 0.7.3 -> 0.7.4
|
2021-05-11 08:46:00 +10:00 |
|
paml
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
|
picard-tools
|
picard-tools: 2.26.6 -> 2.26.9
|
2021-12-22 22:20:36 +11:00 |
|
platypus
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
|
plink-ng
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
poretools
|
python,pythonPackages: make aliases
|
2022-01-16 18:39:59 +00:00 |
|
prodigal
|
treewide: add targetPrefix to hardcoded references to CC=cc
|
2021-02-20 01:01:46 +07:00 |
|
quast
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
raxml
|
mpi: use mpi attribute consistently as the default MPI implementations
|
2021-01-23 12:15:13 +01:00 |
|
repseek
|
repseek: init at 9Sep2014 (#148017)
|
2022-01-31 14:59:32 +01:00 |
|
sambamba
|
sambamba: 0.8.1 -> 0.8.2 (#155972)
|
2022-01-23 04:51:46 +01:00 |
|
samblaster
|
samblaster: fix darwin build
|
2021-05-18 13:41:51 +02:00 |
|
samtools
|
samtools: pull upstream fix for ncurses-6.3
|
2021-11-26 13:02:05 +00:00 |
|
seaview
|
seaview: 5.0.4 -> 5.0.5
|
2021-12-12 15:59:16 +00:00 |
|
snpeff
|
treewide: unzip buildInputs to nativeBuildInputs (#112302)
|
2021-02-20 16:01:53 -05:00 |
|
somatic-sniper
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
sortmerna
|
sortmerna: mark broken on darwin
|
2021-01-26 12:55:33 -05:00 |
|
spades
|
SPAdes: 3.15.2 -> 3.15.3
|
2021-08-15 11:12:42 +03:00 |
|
stacks
|
stacks: 2.59 -> 2.60
|
2022-01-02 19:23:58 +01:00 |
|
star
|
star: 2.7.9a -> 2.7.10a
|
2022-01-24 19:51:44 +01:00 |
|
strelka
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
subread
|
subread: init 2.0.3
|
2021-12-14 13:30:23 +11:00 |
|
sumatools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
svaba
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
tebreak
|
tebreak: also use python3 for tests
|
2022-01-16 18:00:59 +00:00 |
|
trimal
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
truvari
|
truvari: 2.0.2 -> 2.1.1 (#126839)
|
2021-06-15 22:14:20 +02:00 |
|
varscan
|
varscan: deprecate phases
|
2021-08-03 00:04:16 +02:00 |
|
vcftools
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
|
whisper
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
xenomapper
|
python3Packages.xenomapper: move to top-level
|
2022-01-01 02:09:11 +01:00 |
