79 lines
1.7 KiB
Nix
79 lines
1.7 KiB
Nix
{ lib
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, python
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, buildPythonPackage
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, fetchFromGitHub
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, cython
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, tiledb
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, numpy
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, wheel
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, isPy3k
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, setuptools_scm
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, psutil
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}:
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buildPythonPackage rec {
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pname = "tiledb";
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version = "0.5.6";
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format = "setuptools";
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src = fetchFromGitHub {
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owner = "TileDB-Inc";
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repo = "TileDB-Py";
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rev = version;
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sha256 = "0cgm4dhyqay26xmrzlv21ha8qh55m4q3yr338lrv81ngz77zxsvw";
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};
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nativeBuildInputs = [
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cython
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setuptools_scm
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];
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buildInputs = [
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tiledb
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];
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propagatedBuildInputs = [
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numpy
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wheel # No idea why but it is listed
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];
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checkInputs = [
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psutil
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];
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TILEDB_PATH = tiledb;
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SETUPTOOLS_SCM_PRETEND_VERSION = version;
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disabled = !isPy3k; # Not bothering with python2 anymore
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postPatch = ''
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# Hardcode path to shared object
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substituteInPlace tiledb/__init__.py --replace \
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'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
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# Disable failing test
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substituteInPlace tiledb/tests/test_examples.py --replace \
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"test_docs" "dont_test_docs"
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# these tests don't always fail
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substituteInPlace tiledb/tests/test_libtiledb.py --replace \
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"test_varlen_write_int_subarray" "dont_test_varlen_write_int_subarray"
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substituteInPlace tiledb/tests/test_metadata.py --replace \
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"test_metadata_consecutive" "dont_test_metadata_consecutive"
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'';
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checkPhase = ''
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pushd "$out"
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${python.interpreter} -m unittest tiledb.tests.all.suite_test
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popd
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'';
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meta = with lib; {
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description = "Python interface to the TileDB storage manager";
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homepage = "https://github.com/TileDB-Inc/TileDB-Py";
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license = licenses.mit;
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maintainers = with maintainers; [ fridh ];
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};
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}
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