41 lines
1.3 KiB
Nix
41 lines
1.3 KiB
Nix
{ stdenv, fetchFromGitHub, fetchpatch, makeWrapper, python27Packages, wget, diamond, hmmer }:
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python27Packages.buildPythonApplication rec {
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pname = "eggnog-mapper";
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version = "1.0.3";
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src = fetchFromGitHub {
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owner = "eggnogdb";
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repo = "eggnog-mapper";
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rev = "${version}";
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sha256 = "1aaaflppy84bhkh2hb5gnzm4xgrz0rz0cgfpadr9w8cva8p0sqdv";
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};
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patches = (fetchpatch {
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url = https://github.com/eggnogdb/eggnog-mapper/pull/125/commits/b7828e4c8c1c453e391aef050f06ff3f84ff9faf.patch;
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sha256 = "0nz1a7ybm4j5c7vdm3annnxz9036iam2044hia341a0am9wydmzk";
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});
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buildInputs = [ makeWrapper ];
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propagatedBuildInputs = [ python27Packages.biopython wget diamond hmmer ];
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# make emapper find diamond & hmmer
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makeWrapperArgs = [
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''--prefix PATH ':' "${diamond}/bin"''
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''--prefix PATH ':' "${hmmer}/bin"''
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];
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# Tests rely on some of the databases being available, which is not bundled
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# with this package as (1) in total, they represent >100GB of data, and (2)
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# the user can download only those that interest them.
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doCheck = false;
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meta = with stdenv.lib; {
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description = "Fast genome-wide functional annotation through orthology assignment";
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license = licenses.gpl2;
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homepage = https://github.com/eggnogdb/eggnog-mapper/wiki;
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maintainers = with maintainers; [ luispedro ];
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platforms = platforms.all;
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};
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}
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