39 lines
1013 B
Nix
39 lines
1013 B
Nix
{stdenv, fetchFromGitHub, python27, htslib, zlib, makeWrapper}:
|
|
|
|
let python = python27.withPackages (ps: with ps; [ cython ]);
|
|
|
|
in stdenv.mkDerivation rec {
|
|
name = "platypus-unstable-${version}";
|
|
version = "2018-07-22";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "andyrimmer";
|
|
repo = "Platypus";
|
|
rev = "3e72641c69800da0cd4906b090298e654d316ee1";
|
|
sha256 = "0nah6r54b8xm778gqyb8b7rsd76z8ji4g73sm6rvpw5s96iib1vw";
|
|
};
|
|
|
|
buildInputs = [ htslib python zlib makeWrapper ];
|
|
|
|
buildPhase = ''
|
|
patchShebangs .
|
|
make
|
|
'';
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/libexec/platypus
|
|
cp -r ./* $out/libexec/platypus
|
|
|
|
mkdir -p $out/bin
|
|
makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py"
|
|
'';
|
|
|
|
meta = with stdenv.lib; {
|
|
description = "The Platypus variant caller";
|
|
license = licenses.gpl3;
|
|
homepage = https://github.com/andyrimmer/Platypus;
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = platforms.x86_64;
|
|
};
|
|
}
|