54 lines
1.3 KiB
Nix
54 lines
1.3 KiB
Nix
{ lib, stdenv
|
|
, buildPythonPackage
|
|
, fetchPypi
|
|
, numpy
|
|
, scipy
|
|
, six
|
|
, paramz
|
|
, matplotlib
|
|
, cython
|
|
, nose
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "GPy";
|
|
version = "1.10.0";
|
|
|
|
src = fetchPypi {
|
|
inherit pname version;
|
|
sha256 = "a2b793ef8d0ac71739e7ba1c203bc8a5afa191058b42caa617e0e29aa52aa6fb";
|
|
};
|
|
|
|
buildInputs = [ cython ];
|
|
propagatedBuildInputs = [ numpy scipy six paramz matplotlib ];
|
|
checkInputs = [ nose ];
|
|
|
|
# $ nosetests GPy/testing/*.py
|
|
# => Ran 483 tests in 112.146s (on 8 cores)
|
|
# So instead, run shorter set of tests
|
|
checkPhase = ''
|
|
nosetests GPy/testing/linalg_test.py
|
|
'';
|
|
|
|
# Rebuild cython-generated .c files since the included
|
|
# ones were built with an older version of cython that is
|
|
# incompatible with python3.9
|
|
preBuild = ''
|
|
for fn in $(find . -name '*.pyx'); do
|
|
echo $fn | sed 's/\.\.pyx$/\.c/' | xargs ${cython}/bin/cython -3
|
|
done
|
|
'';
|
|
|
|
pythonImportsCheck = [
|
|
"GPy"
|
|
];
|
|
|
|
meta = with lib; {
|
|
description = "Gaussian process framework in Python";
|
|
homepage = "https://sheffieldml.github.io/GPy";
|
|
license = licenses.bsd3;
|
|
maintainers = with maintainers; [ bcdarwin ];
|
|
broken = stdenv.isDarwin; # See inscrutable error message here: https://github.com/NixOS/nixpkgs/pull/107653#issuecomment-751527547
|
|
};
|
|
}
|