{ stdenv , fetchFromGitHub , fetchpatch }: # This file is responsible for fetching the sage source and adding necessary patches. # It does not actually build anything, it just copies the patched sources to $out. # This is done because multiple derivations rely on these sources and they should # all get the same sources with the same patches applied. stdenv.mkDerivation rec { version = "8.4"; name = "sage-src-${version}"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; sha256 = "0gips1hagiz9m7s21bg5as8hrrm2x5k47h1bsq0pc46iplfwmv2d"; }; # Patches needed because of particularities of nix or the way this is packaged. # The goal is to upstream all of them and get rid of this list. nixPatches = [ # https://trac.sagemath.org/ticket/25358 (fetchpatch { name = "safe-directory-test-without-patch.patch"; url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=dc673c17555efca611f68398d5013b66e9825463"; sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7"; }) # Unfortunately inclusion in upstream sage was rejected. Instead the bug was # fixed in python, but of course not backported to 2.7. So we'll probably # have to keep this around until 2.7 is deprecated. # https://trac.sagemath.org/ticket/25316 # https://github.com/python/cpython/pull/7476 ./patches/python-5755-hotpatch.patch # Revert the commit that made the sphinx build fork even in the single thread # case. For some yet unknown reason, that breaks the docbuild on nix and archlinux. # See https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ. # https://trac.sagemath.org/ticket/26608 ./patches/revert-sphinx-always-fork.patch # Make sure py2/py3 tests are only run when their expected context (all "sage" # tests) are also run. That is necessary to test dochtml individually. See # https://trac.sagemath.org/ticket/26110 for an upstream discussion. ./patches/Only-test-py2-py3-optional-tests-when-all-of-sage-is.patch ]; # Patches needed because of package updates. We could just pin the versions of # dependencies, but that would lead to rebuilds, confusion and the burdons of # maintaining multiple versions of dependencies. Instead we try to make sage # compatible with never dependency versions when possible. All these changes # should come from or be proposed to upstream. This list will probably never # be empty since dependencies update all the time. packageUpgradePatches = let # Fetch a diff between `base` and `rev` on sage's git server. # Used to fetch trac tickets by setting the `base` to the last release and the # `rev` to the last commit of the ticket. fetchSageDiff = { base, rev, ...}@args: ( fetchpatch ({ url = "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}"; # We don't care about sage's own build system (which builds all its dependencies). # Exclude build system changes to avoid conflicts. excludes = [ "build/*" ]; } // builtins.removeAttrs args [ "rev" "base" ]) ); in [ # New glpk version has new warnings, filter those out until upstream sage has found a solution # https://trac.sagemath.org/ticket/24824 ./patches/pari-stackwarn.patch # not actually necessary since the pari upgrade, but necessary for the glpk patch to apply (fetchpatch { url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch"; sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp"; stripLen = 1; }) # https://trac.sagemath.org/ticket/25260 ./patches/numpy-1.15.1.patch # https://trac.sagemath.org/ticket/26315 ./patches/giac-1.5.0.patch # needed for ntl update # https://trac.sagemath.org/ticket/25532 (fetchpatch { name = "lcalc-c++11.patch"; url = "https://git.archlinux.org/svntogit/community.git/plain/trunk/sagemath-lcalc-c++11.patch?h=packages/sagemath&id=0e31ae526ab7c6b5c0bfacb3f8b1c4fd490035aa"; sha256 = "0p5wnvbx65i7cp0bjyaqgp4rly8xgnk12pqwaq3dqby0j2bk6ijb"; }) (fetchpatch { name = "cython-0.29.patch"; url = "https://git.sagemath.org/sage.git/patch/?h=f77de1d0e7f90ee12761140500cb8cbbb789ab20"; sha256 = "14wrpy8jgbnpza1j8a2nx8y2r946y82pll1fv3cn6gpfmm6640l3"; }) # https://trac.sagemath.org/ticket/26360 (fetchpatch { name = "arb-2.15.1.patch"; url = "https://git.sagemath.org/sage.git/patch/?id=30cc778d46579bd0c7537ed33e8d7a4f40fd5c31"; sha256 = "13vc2q799dh745sm59xjjabllfj0sfjzcacf8k59kwj04x755d30"; }) # https://trac.sagemath.org/ticket/26326 # needs to be split because there is a merge commit in between (fetchSageDiff { name = "networkx-2.2-1.patch"; base = "8.4"; rev = "68f5ad068184745b38ba6716bf967c8c956c52c5"; sha256 = "112b5ywdqgyzgvql2jj5ss8la9i8rgnrzs8vigsfzg4shrcgh9p6"; }) (fetchSageDiff { name = "networkx-2.2-2.patch"; base = "626485bbe5f33bf143d6dfba4de9c242f757f59b~1"; rev = "db10d327ade93711da735a599a67580524e6f7b4"; sha256 = "09v87id25fa5r9snfn4mv79syhc77jxfawj5aizmdpwdmpgxjk1f"; }) ]; patches = nixPatches ++ packageUpgradePatches; postPatch = '' # make sure shebangs etc are fixed, but sage-python23 still works find . -type f -exec sed \ -e 's/sage-python23/python/g' \ -i {} \; echo '#!${stdenv.shell} python "$@"' > build/bin/sage-python23 # Do not use sage-env-config (generated by ./configure). # Instead variables are set manually. echo '# do nothing' > src/bin/sage-env-config ''; configurePhase = "# do nothing"; buildPhase = "# do nothing"; installPhase = '' cp -r . "$out" ''; }