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f64885b9ca
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3040 Commits

Author SHA1 Message Date
Timo Kaufmann
f64885b9ca sage: fix pkgconfig errors in tests 
python.pkgs.pkgconfig raises an exception on missing packages since
version 1.5.0. Previously those errors were just silently ignored. That
worked fine, since the packages are only missing at runtime (when they
are not really needed) but present at buildtime.

Since this fails the tests now, we just add the packages to
PKG_CONFIG_PATH at runtime. This does not add additional runtime
dependencies. Still, it would be nicer if the sage testssuite would not
test the buildsystem at runtime in the first place.

The breakage was originally caused by the pkgconfig update in
1efa71616f.
 2019-11-06 14:40:13 +01:00
Timo Kaufmann
da7ec1c139 sage: ignore werkzeug immutable dict deprecation 2019-11-06 14:40:13 +01:00
Timo Kaufmann
f85ce834ce sage: ignore deprecation warnings in rst2sws 
Needs to be fixed upstream (by werkzeug, twisted). Doesn't impact the
functionality and the tests are soon to be removed with the py3 update
anyway.
 2019-11-06 14:40:13 +01:00
Timo Kaufmann
af480796c9 sage: ignore cmp deprecation in sagenb 2019-11-06 14:40:13 +01:00
R. RyanTM
b7f151df70 yacas: 1.6.1 -> 1.8.0 2019-11-04 23:49:42 -08:00
scalavision
d9b40f6397 deeptools: init at 3.3.1 2019-11-04 02:42:36 -08:00
R. RyanTM
28b0a6a9e0 star: 2.7.2b -> 2.7.3a 2019-11-03 10:23:05 +01:00
R. RyanTM
1faee87692 dcmtk: 3.6.4 -> 3.6.5 2019-11-02 11:12:28 -07:00
Gabriel Ebner
ac24901d17
libqalculate: 3.4.0 -> 3.5.0 (#72550) 
libqalculate: 3.4.0 -> 3.5.0
 2019-11-02 10:59:06 +01:00
Gabriel Ebner
a4f0bfdc87 qalculate-gtk: 3.4.0 -> 3.5.0 2019-11-02 10:54:10 +01:00
Jörg Thalheim
04a079082c
Merge pull request #72539 from r-ryantm/auto-update/jmol 
jmol: 14.29.54 -> 14.29.55
 2019-11-02 07:49:50 +00:00
R. RyanTM
b3799c5627 jmol: 14.29.54 -> 14.29.55 2019-11-02 00:16:58 -07:00
R. RyanTM
7f919914bf eprover: 2.3 -> 2.4 2019-11-01 14:00:31 -07:00
Timo Kaufmann
f7c1e8f274
Merge pull request #72328 from timokau/sage-ignore-cmp-deprecation 
sage: ignore attrs deprecation warning
 2019-10-30 23:14:07 +01:00
Timo Kaufmann
32827e35d8 sage: ignore attrs deprecation warning 
cmp is deprecated since attrs 19.2.0:
http://www.attrs.org/en/19.2.0/changelog.html

The deprecation warning breaks the doctests.  Fortunately they have a
rather long deprecation window, so we can just wait until upstream(s)
fix this.
 2019-10-30 22:27:00 +01:00
Peter Simons
3bc76218a3
Merge pull request #72058 from nh2/r-static-library 
R: Add enableShared/enableStatic arguments
 2019-10-30 13:31:52 +01:00
Niklas Hambüchen
edbe2d8145 R: Add static argument. 
R's autoconf does not use the normal configure flags for that.
 2019-10-30 11:44:02 +01:00
Ben Darwin
ddc2955ad9 EZminc: 2017-08-29 -> 2019-07-25; mark unbroken 2019-10-26 09:55:30 -07:00
Alexey Shmalko
140d402cb5
Merge pull request #71991 from iimog/dcmtk 
DCMTK: init at 3.6.4
 2019-10-26 15:15:50 +03:00
Markus Ankenbrand
905245b32c dcmtk: init at 3.6.4 2019-10-26 13:02:50 +02:00
Vincent Laporte
a8892b0d76
coq_8_10: 8.10.0 → 8.10.1 2019-10-25 07:58:47 +00:00
Vincent Laporte
d56582eb2b coq_8_10: enable CoqIDE 2019-10-25 07:58:02 +00:00
scalavision
535a7006ea truvari: init at 1.3.2 (#70877) 
pythonPackages.pyvcf: init at 0.6.8
 2019-10-24 17:06:42 -04:00
R. RyanTM
c6af1f6e03 verilator: 4.018 -> 4.020 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2019-10-24 14:02:00 -05:00
R. RyanTM
c300055e11 ott: 0.28 -> 0.29 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ott/versions
 2019-10-23 11:44:13 -07:00
R. RyanTM
b8acb48b24 picard-tools: 2.20.8 -> 2.21.1 (#71748) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-10-23 09:34:40 +02:00
R. RyanTM
a9551de99a dcm2niix: 1.0.20190410 -> 1.0.20190902 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/dcm2niix/versions
 2019-10-22 16:31:19 -07:00
Timo Kaufmann
ed145e8f22
Merge pull request #71694 from r-ryantm/auto-update/nauty 
nauty: 26r11 -> 26r12
 2019-10-22 23:33:48 +02:00
R. RyanTM
d93659ffa0 nauty: 26r11 -> 26r12 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nauty/versions
 2019-10-22 10:14:36 -07:00
R. RyanTM
dbab6b7994 jmol: 14.29.53 -> 14.29.54 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-10-22 10:06:52 +02:00
Mario Rodas
e8e1f42499
Merge pull request #71590 from r-ryantm/auto-update/ginac 
ginac: 1.7.7 -> 1.7.8
 2019-10-21 20:21:31 -05:00
R. RyanTM
bf30d5d6f6 ginac: 1.7.7 -> 1.7.8 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
 2019-10-21 15:21:33 -07:00
Michael Raskin
a35022aa80
Merge pull request #71566 from r-ryantm/auto-update/golly 
golly: 3.2 -> 3.3
 2019-10-21 19:41:50 +00:00
R. RyanTM
b73b9399ba golly: 3.2 -> 3.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/golly/versions
 2019-10-21 11:24:52 -07:00
Renaud
410d794f05
Merge pull request #71073 from nyanloutre/betaflight_configurator_10_6_0 
betaflight-configurator: 10.5.1 -> 10.6.0
 2019-10-20 20:01:00 +02:00
Ben Wolsieffer
8d04355d87 qgroundcontrol: 3.3.0 -> 3.5.5, fix build (#71308) 
* qgroundcontrol: 3.3.0 -> 3.5.4, fix build

* qgroundcontrol: 3.5.4 -> 3.5.5
 2019-10-20 19:27:23 +02:00
Emily
fecfbe18bd symbiyosys: 2019.08.13 -> 2019.10.11 2019-10-19 12:26:49 -05:00
Daniel Frank
b4136a8f5b kicad: 5.1.2 -> 5.1.4, fix ngspice, mark broken on aarch64 (#69584) 2019-10-16 02:02:49 -04:00
Vincent Laporte
b4db381443 coq_8_10: 8.10+β3 → 8.10.0 
coqPackages.coq-elpi: master → 1.1.0
 2019-10-16 02:43:46 +00:00
Vincent Laporte
0cc70b5697 coq: do not build CoqIDE for Coq 8.10 
GTK3 at version 3.24.11 has broken pkg-config files
 2019-10-16 02:43:46 +00:00
Vincent Laporte
1292f49a37 coq_8_10: do not take “camlp5” as input 2019-10-16 02:43:46 +00:00
Vincent Laporte
325f89ef19 coq_8_10: fix CoqIDE on darwin 2019-10-16 02:43:46 +00:00
worldofpeace
4bcef38f24
Merge pull request #63827 from acairncross/fix-monosat 
monosat: Fix Linux build
 2019-10-15 20:55:28 +00:00
Aiken Cairncross
15dbd8de7c monosat: 60528a3 -> 1.8.0 
This fixes the broken Linux build by only building the dynamic library/
executable (an option that was only added in the latest tagged version).
 2019-10-15 16:52:25 -04:00
Aiken Cairncross
b4da391ade monosat: Add self as maintainer 2019-10-15 12:20:55 +01:00
Millian Poquet
5b9cbeb75c simgrid: 3.23 -> 3.24 2019-10-14 16:08:43 +02:00
Renaud
e6f99fa3b1
Merge pull request #69961 from r-ryantm/auto-update/star 
star: 2.7.1a -> 2.7.2b
 2019-10-13 17:10:23 +02:00
nyanloutre
d849c213ba
betaflight-configurator: 10.5.1 -> 10.6.0 2019-10-13 11:58:00 +02:00
Renaud
94500c93dc
Merge pull request #69515 from r-ryantm/auto-update/eagle 
eagle: 9.4.2 -> 9.5.0
 2019-10-12 15:09:07 +02:00
Renaud
a12f3ebee7
Merge pull request #69488 from r-ryantm/auto-update/clp 
clp: 1.17.2 -> 1.17.3
 2019-10-12 14:15:31 +02:00