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1332 Commits

Author SHA1 Message Date
Domen Kožar
4ccb553b70 Merge pull request #22817 from jbedo/r 
R: 3.2.4 -> 3.3.2
 2017-02-27 14:02:13 +01:00
Bjørn Forsman
c49533a494 qt-gstreamer1: align attrname with pkgname 2017-02-27 12:16:26 +01:00
Christopher League
242f6caac6 logisim: use better jar wrapper, closes #23068 2017-02-26 10:19:32 +01:00
Gabriel Ebner
cc647804f1 lean: 3.0.0 -> 3.1.0 2017-02-26 08:50:15 +01:00
Thomas Tuegel
0ed156a216 Merge pull request #22977 from ttuegel/triage-kde4 
Remove KDE 4 desktop packages
 2017-02-25 12:21:44 -06:00
Peter Hoeg
e564a399d9 Merge pull request #22770 from NickHu/master 
fdr: init at 4.2.0
 2017-02-25 14:50:04 +08:00
Thomas Tuegel
b4ba042924
qt4: Don't pass top-level attribute through kde4 2017-02-24 16:49:06 -06:00
Nick Hu
cbe765043f fdr: init at 4.2.0 2017-02-24 11:00:02 +00:00
Justin Bedo
4bb8727284
R: 3.2.4 -> 3.3.2 2017-02-24 15:22:12 +11:00
Franz Pletz
67018e7759
pymol: fix evaluation 
cc #23007 @Mounium @Mic92
 2017-02-22 08:48:42 +01:00
Mounium
eb688ac0a7 pymol: init at 1.8.4 (#23007) 2017-02-22 01:35:09 +01:00
Maximilian Bosch
10a453c61b
geogebra: add ma27 as maintainer 2017-02-19 16:51:01 +01:00
Maximilian Bosch
5d62724e27
geogebra: 5-0-328-0 -> 5-0-331-0 2017-02-19 16:44:49 +01:00
Maximilian Bosch
d95868e980
geogebra: 5-0-320-0 -> 5-0-328-0 2017-02-14 17:43:58 +01:00
Rongcui Dong
acce1d9ad2 ngspice: Add XSpice and Cider support 2017-02-13 15:23:38 -08:00
Frederik Rietdijk
2832472da0 golly: use python2 2017-02-10 09:35:10 +01:00
Celine Mercier
78c052e91a
ecopcr: init at 0.8.0 2017-02-06 16:01:08 +01:00
Ian Lancaster
5f67b7b30a emboss: 6.0.1 -> 6.6.0 2017-02-04 19:05:48 -05:00
Joachim F
2b961075ae Merge pull request #22231 from Ma27/hotfix/update-geogebra 
geogebra: 5.0.271.0 -> 5-0-320-0
 2017-02-03 01:13:07 +01:00
Gabriel Ebner
311ec6abd5 Merge pull request #22361 from peterhoeg/u/crunch 
speedcrunch: 0.11 -> 0.12.0
 2017-02-02 07:54:06 +01:00
Rongcui Dong
7ea20c9e27 ngspice: 25 -> 26 2017-02-02 07:42:26 +01:00
Peter Hoeg
58a5d0783e speedcrunch: 0.11 -> 0.12.0 
Also:
  - build against qt5 instead of qt4
 2017-02-02 09:13:54 +08:00
Gabriel Ebner
ac10c19746 veriT: 201506 -> 2016 2017-02-01 19:43:02 +01:00
Damien Cassou
58dc8e3024
Remove myself from maintainers 2017-01-31 11:00:14 +01:00
Maximilian Bosch
eda5bca00a geogebra: 5.0.271.0 -> 5-0-320-0 2017-01-28 17:33:20 +01:00
Vincent Laporte
d40b680101 coq-8.4: fix build of ssreflect and mathcomp 2017-01-25 13:14:31 +00:00
Vincent Laporte
798a87159b Coq: propagates the findlib package 
So that Coq libraries that need it can easyly use it
 2017-01-25 10:29:13 +00:00
Vincent Laporte
9b949be617 coq: minor refactoring 2017-01-25 10:29:13 +00:00
Vincent Laporte
a30e8db9f0 coq: merge files 8.5.nix and 8.6.nix into default.nix 2017-01-25 10:29:13 +00:00
Vincent Laporte
86b74fb76b alt-ergo: 0.99.1 -> 1.30 2017-01-21 13:44:41 +00:00
Vincent Laporte
8c928cd55a why3: 0.87.1 -> 0.87.3 2017-01-21 13:31:10 +00:00
Gabriel Ebner
6c9f4a61be lean: 2017-01-14 -> 3.0.0 2017-01-20 10:59:54 +01:00
Gabriel Ebner
5ad75554b6 lean: 2017-01-06 -> 2017-01-14 2017-01-14 09:37:48 +01:00
Pascal Wittmann
89dfe67f81 Merge pull request #21819 from AtnNn/isabelle 
isabelle: 2016 -> 2016-1
 2017-01-13 21:58:57 +01:00
Etienne Laurin
3d301e384e isabelle: 2016 -> 2016-1 2017-01-11 17:33:04 -05:00
Michael Raskin
39ed261c4c Merge pull request #21632 from veprbl/sherpa_fix 
sherpa: fix sqlite dependency
 2017-01-09 09:58:22 +00:00
Dmitry Kalinkin
0f71012fe6
sherpa: add useful dependencies 2017-01-07 01:36:51 -05:00
Vladimír Čunát
07bf828bd9
Merge branch 'staging'; security /cc #21642 2017-01-06 16:32:47 +01:00
Gabriel Ebner
74a97421ce lean: 2016-12-30 -> 2017-01-06 2017-01-06 11:57:40 +01:00
Dmitry Kalinkin
2f23d60323 sherpa: fix sqlite dependency 2017-01-04 04:59:06 +00:00
Daiderd Jordan
27660cfdc0
Merge branch 'master' into staging 2017-01-04 01:42:26 +01:00
Domen Kožar
af2cfc076f haskellPackages.z3: fix #16357 2017-01-03 23:10:24 +01:00
Michael Raskin
7c5784d1f0 maxima: 5.38.1 -> 5.39.0 2017-01-02 21:53:21 +01:00
Daiderd Jordan
5a67b130b9
Merge branch 'master' into staging 2017-01-02 00:54:17 +01:00
Dmitry Kalinkin
c7bcb99ff2
root: 6.04.18 -> 6.08.02 
This relies on
e9d60c56 ('libc++3.7: fix to use with modern compilers')
 2017-01-01 17:52:03 -05:00
Pascal Wittmann
039e90c9d3
fityk: 1.3.0 -> 1.3.1 2017-01-01 18:19:39 +01:00
Gabriel Ebner
68b2d43c88 lean: 2016-12-08 -> 2016-12-30 2016-12-31 13:51:10 +01:00
Dmitry Kalinkin
8fb6895614
sherpa: init at 2.2.1 2016-12-30 14:27:55 -05:00
Michael Raskin
e65cccb776 Merge pull request #21221 from rardiol/gplates 
gplates: init at 2.0.0
 2016-12-28 10:21:23 +00:00
mimadrid
29cb10c021
igv: 2.3.77 -> 2.3.89 2016-12-23 19:37:10 -05:00
John Wiegley
4888bfecc2
coq_8_6: 8.6 is now default, 8.4 optional, updated mathcomp/ssreflect 
Addresses #14829
 2016-12-22 10:35:56 -08:00
Jason Daniel Augustine Gilliland
59ca5d213f freebayes: init at 1.1.0 
Signed-off-by: zimbatm <zimbatm@zimbatm.com>
 2016-12-22 14:10:37 +00:00
ft@zeus
1b8aec421b
stellarium: 0.14.3 -> 0.15.0 
close #21271
 2016-12-21 20:22:44 -05:00
Ricardo Ardissone
662aa495df gplates: init at 2.0.0 2016-12-16 22:29:53 -02:00
John Wiegley
838a3b4294
coq_8_6: 8.6rc1 -> 8.6 2016-12-14 13:46:07 -08:00
John Wiegley
62934023c3
coq_HEAD: Update to the latest commit as of 2016-12-13 2016-12-13 08:09:23 -08:00
John Wiegley
360234dab6
coq_8_6: new package, based on Coq 8.6rc1 2016-12-13 07:27:15 -08:00
Eelco Dolstra
c5b96ca801 minisat: Fix build on Darwin 2016-12-09 19:57:07 +01:00
Gabriel Ebner
a2210a9efd lean: init at 2016-12-08 2016-12-08 10:30:28 -05:00
Gabriel Ebner
ce2a9a8f9b lean2: 2016-07-05 -> 2016-11-29 
Renamed from lean since upstream renamed it as well.  The lean attribute
in nixpkgs will now refer to the new lean 3 version.
 2016-12-08 10:30:28 -05:00
Michael Raskin
3a98749bd1 pari: 2.9.0 -> 2.9.1 2016-12-08 16:15:18 +01:00
Vincent Laporte
431c564993 hol_light: fix build with Camlp5-6.17 2016-11-29 18:34:21 +00:00
Nicolò Balzarotti
f390d68b75 yarp: 2.3.66.1 -> 2.3.68 2016-11-28 17:03:19 +01:00
Michael Raskin
fcc5a4d3b8 Merge pull request #20672 from AndersonTorres/pari 
pari/gp: 2.7.6 -> 2.9.0
 2016-11-26 13:34:15 +00:00
Ole Krüger
a31c37c759 [mathematica] 10.0.2 -> 11.0.1 2016-11-25 12:13:41 +01:00
AndersonTorres
d395439a10 pari/gp: 2.7.6 -> 2.9.0 
Adding gp2c compiler, too.
 2016-11-24 22:44:56 -02:00
Vladimír Čunát
4c19651108
Merge #20264: root: fix environment setup 2016-11-14 22:27:09 +01:00
Justin Bedo
a6d6a3972f
plink-ng: init at 1.90b3 2016-11-14 20:28:39 +11:00
Shea Levy
2ded9f3f7b coq: Improve emacs buffer handling 2016-11-13 14:01:01 -05:00
Austin Seipp
0bdc0143fe nixpkgs: proverif 1.94 -> 1.95 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-11-10 03:45:51 +00:00
Frederik Rietdijk
3b5d5041ef Merge pull request #20267 from jbedo/master 
Fix bcftools installation prefix
 2016-11-09 21:57:46 +01:00
Gabriel Ebner
8c4aee4c79 z3: 4.4.1 -> 4.5.0 2016-11-08 16:14:16 -05:00
Justin Bedo
ec31e2cc27
Fix bcftools installation prefix 2016-11-09 08:03:04 +11:00
Tim Steinbach
6d11e8ed4c
Remove pal2nal 
No longer build/exists
 2016-11-03 21:58:47 -04:00
Tim Steinbach
c36a1d6502
paml: 4.2a -> 4.9c 2016-11-03 21:33:19 -04:00
Vincent Laporte
b028b5f4ef coq-8.5: ease the selection of an older (patch level) version 2016-11-02 19:39:22 +01:00
Vincent Laporte
b840da02cd coq: build and install the votour utility 2016-11-02 19:23:15 +01:00
Vincent Laporte
da68cc24f0 coq: 8.5pl2 -> 8.5pl3 2016-11-02 19:23:15 +01:00
vbgl
7f241baaaf Merge pull request #19902 from dtzWill/update/yices 
yices: 2.3.1 -> 2.5.1
 2016-10-31 09:35:21 +01:00
Will Dietz
0443affe17 yices: Add darwin to meta.platforms 2016-10-30 13:38:07 -05:00
Dmitry Kalinkin
9434ec5441
root: fix environment setup 
1) s/envHook/postHook/
2) patch to not set $p that fixes nested ```nix-shell -p root``` calls
 2016-10-29 14:47:32 -04:00
Ertugrul Söylemez
9c8f6fb4fb pari-unstable: 2.8.0 -> 2.8.1, "alpha" -> "unstable". 2016-10-27 14:48:03 +02:00
Michael Raskin
f9f23084d9 pari_alpha: fix source link 2016-10-27 12:17:16 +02:00
Will Dietz
3cf27a654a yices: Build in parallel, run tests, fix test shebang. 2016-10-26 13:01:21 -05:00
Will Dietz
8584ec97ed yices: fix install target by using 'true' as ldconfig 2016-10-26 12:59:34 -05:00
Will Dietz
1f89121551 yices: 2.3.1 -> 2.5.1 2016-10-26 12:59:06 -05:00
Frederik Rietdijk
7077a270bf Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-26 13:06:43 +02:00
Michael Raskin
28aa92de64 maxima: support building with ECL; optionally support building maxima.fas when building with ECL 2016-10-26 11:06:41 +02:00
Michael Raskin
36804c75e4 singular: Wrap executables instead of symlinking 
This way config scripts can fidn out their own location
 2016-10-26 11:06:40 +02:00
Michael Raskin
2bed05d8e1 singular: add an option to install as libsingular 2016-10-26 11:06:40 +02:00
Michael Raskin
8e9ad9bfdc pari_alpha: use perl to generate function descriptions 2016-10-26 11:06:40 +02:00
Michael Raskin
5af1b7ad02 singular: 3-1-2 -> 3-1-7 2016-10-26 11:06:39 +02:00
Michael Raskin
93bea1ecb0 R: 3.2.3 -> 3.2.4 2016-10-26 11:06:37 +02:00
Michael Raskin
5f418b75d6 nauty: init at 26r7 2016-10-26 11:06:36 +02:00
Michael Raskin
a67a50895c gfan: init at 0.5 2016-10-26 11:06:36 +02:00
Michael Raskin
71f659d86d pari_alpha: init at 2.8.0.alpha: planning to use for Sage 2016-10-26 11:06:34 +02:00
Michael Raskin
411d5742ca symmetrica: init at 2.0 2016-10-26 11:06:33 +02:00
Michael Raskin
c450d7b0a8 ratpoints: init at 2.1.3 2016-10-26 11:06:33 +02:00
Frederik Rietdijk
e56832d730 Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-22 17:23:24 +02:00
Vladimír Čunát
4328629bf8 treewide: fix meta evaluation 
There is no `stdenv.maintainers`. /cc @veprbl.
 2016-10-22 12:05:23 +02:00
Jörg Thalheim
9c0b5e4b22 Merge pull request #19666 from veprbl/hep_for_upstream 
Add fastjet, hepmc, yoda, rivet, lhapdf, herwig, pythia, sacrifice, nlojet++
 2016-10-21 21:58:45 +02:00
Dmitry Kalinkin
ef96b48659
root: s/python/python2/ 2016-10-21 15:47:38 -04:00
Dmitry Kalinkin
59a8aff8e6
root: add veprbl to maintainers 2016-10-21 13:30:30 -04:00
Dmitry Kalinkin
b4e3e7b752
add veprbl to maintainers 2016-10-21 13:29:57 -04:00
=
d6880b210c
yarp: 2.3.65 -> 2.3.66.1 2016-10-20 19:34:03 +02:00
Dmitry Kalinkin
3324d8dc72
sacrifice: init at 1.0.0 2016-10-19 02:17:16 -04:00
Frederik Rietdijk
8963dae343 z3: use python2 2016-10-18 23:16:07 +02:00
Shea Levy
eca0f17ad2 nix-buffer support improvements. 
Use inherit-local, add per-package elisp hooks.
 2016-10-07 10:31:37 -04:00
Kirill Boltaev
3e646865f4 treewide: use ocaml.version (#19192) 2016-10-05 09:32:30 +02:00
Aneesh Agrawal
fcee1d0b28
Remove redundant -DCMAKE_BUILD_TYPE=Release flags 
Since commit 183d05a0 in 2012, this is the default.

fixes #18000
 2016-10-01 16:13:41 +02:00
Brian McKenna
57e1250d89 redprl: remove explicit builder 
patchPhase wasn't being called for me so I've switched out the explicit
builder for the generic form. I can now build RedPRL on locally on
NixOS.
 2016-09-29 10:52:29 +10:00
Anthony Cowley
a523351314 redprl: patch install script shebangs 2016-09-27 18:24:06 -04:00
Joachim F
19d3b1aa5f Merge pull request #19004 from nico202/fix-gazebo-cmake 
gazebo7: Fix gazebo-config.cmake output file
 2016-09-27 16:32:32 +02:00
=
efb56cec43
gazebo7: Fix gazebo-config.cmake output file 2016-09-27 10:30:27 +02:00
Kirill Boltaev
2bc87d48f1 scilab: mark as broken 2016-09-26 02:36:49 +03:00
Kirill Boltaev
06ecea00e5 glsurf: mark as broken 2016-09-26 02:36:49 +03:00
Kirill Boltaev
e61663a233 treewide: move to ocaml-ng system 2016-09-26 02:36:49 +03:00
Anthony Cowley
a3c26fec32 redprl: init at 2016-09-22 2016-09-23 20:37:20 -04:00
Vincent Laporte
c78c2b98c4 ecm: set meta.platforms to linux only 2016-09-21 19:14:11 +02:00
Gabriel Ebner
dd4a015aa8 eprover: 1.9 -> 1.9.1 2016-09-20 11:57:14 -04:00
Joachim F
e22dd2f6c5 Merge pull request #18740 from chris-martin/tulip-4-9 
Tulip: 4.1.0 -> 4.9.0
 2016-09-20 14:34:17 +02:00
Ram Kromberg
a729d6ee55 calc: remove redundant groff dependency 2016-09-19 01:37:45 +03:00
Chris Martin
08e5949235 tulip: 4.1.0 -> 4.9.0 2016-09-18 15:24:29 -04:00
Dmitry Kalinkin
7b9deaba81 root: add setup-hook 2016-09-18 04:45:18 -04:00
Nikolay Amiantov
4748709926 Merge commit 'refs/pull/18498/head' of git://github.com/NixOS/nixpkgs 2016-09-13 12:51:34 +03:00
Franz Pletz
fb9117efa6 Merge pull request #18488 from chris-martin/md5-2 
Miscellaneous packages: Use sha256 instead of md5 (part 2)
 2016-09-13 07:11:43 +02:00
Kirill Boltaev
bccd75094f treewide: explicitly specify gtk and related package versions 2016-09-12 18:26:06 +03:00
Dmitry Kalinkin
5646c2aba6 root: add support for x86_64-darwin 
1) add pcre dependency (for some reason builtin_pcre doesn't work)
2) Disable dependencies that are currently not supported by the
expression.  Most users should not need those. These are disabled to
prevent cmake from picking them up from system and causing impurities.
Once there is a user who needs these they will have to update the
expression.
3) disable some OSX detection code that relies on /usr/bin/sw_vers
that chooses c++ library, silences warnings and sets macosx-version-min.
macosx-version-min is already set by nix using MACOSX_DEPLOYMENT_TARGET
environment variable.
 2016-09-11 17:29:13 -04:00
Chris Martin
e417a63e61 scilab: md5->sha256 2016-09-10 13:50:10 -04:00
Dan Peebles
f285ce8fed twelf: fix emacs mode 2016-09-08 23:12:32 -04:00
Michael Raskin
b924cdefa5 tptp: take into account upstream tarball hash change; one file got renamed and some statistics in the documentation got regenerated 2016-09-08 16:49:22 +02:00
obadz
2919375c91 minc_tools: don't run tests which have been failing since first pkged 2016-09-05 17:26:12 +01:00
Domen Kožar
9e363a752f openmodelica: enable parallel building 
(cherry picked from commit 261d51971a352cbcdc8d70dc74f8971ac202a43d)
Signed-off-by: Domen Kožar <domen@dev.si>
 2016-09-05 18:06:28 +02:00
Joachim F
3d852770db Merge pull request #18164 from moyamo/geogebra 
geogebra: 5.0.265.0 -> 5.0.271.0
 2016-09-03 17:06:54 +02:00
Tuomas Tynkkynen
3364230d56 Disable bunch of non-compiling packages on Darwin 
These ones have a "Last successful build" timestamp in the 2014s or
2015s. Presumably no one will notice if we now stop building them.

softether_4_18              2015-09-20  http://hydra.nixos.org/build/39418483
lensfun                     2014-09-30  http://hydra.nixos.org/build/39394104
net_snmp                    2015-09-20  http://hydra.nixos.org/build/39410553
djview                      2015-08-11  http://hydra.nixos.org/build/39413233
libmusicbrainz2             2015-09-20  http://hydra.nixos.org/build/39410106
fox_1_6                     2014-05-07  http://hydra.nixos.org/build/39410858
libofx                      2015-09-24  http://hydra.nixos.org/build/39423507
yacas                       2014-09-30  http://hydra.nixos.org/build/39393150
iomelt                      2014-09-30  http://hydra.nixos.org/build/39408486
softether                   2015-09-20  http://hydra.nixos.org/build/39425800
mp4v2                       2014-09-30  http://hydra.nixos.org/build/39421899
virtuoso7                   2014-09-21  http://hydra.nixos.org/build/39415206
man_db                      2015-04-23  http://hydra.nixos.org/build/39404236
libdiscid                   2014-09-30  http://hydra.nixos.org/build/39412202
zabbix22.agent              2014-09-21  http://hydra.nixos.org/build/39412149
vidalia                     2015-08-06  http://hydra.nixos.org/build/39411500
libmtp                      2015-09-20  http://hydra.nixos.org/build/39419199
wxGTK29                     2015-09-20  http://hydra.nixos.org/build/39415296
ncmpcpp                     2015-11-06  http://hydra.nixos.org/build/39404455
libtorrent                  2014-09-21  http://hydra.nixos.org/build/39394646
shishi                      2014-03-21  http://hydra.nixos.org/build/39418874
ocaml_3_12_1                2014-09-30  http://hydra.nixos.org/build/39392996
djview4                     2015-08-11  http://hydra.nixos.org/build/39427799
vimNox                      2014-05-23  http://hydra.nixos.org/build/39397012
ttfautohint                 2015-08-06  http://hydra.nixos.org/build/39398330
libraw                      2015-09-24  http://hydra.nixos.org/build/39402271
wxGTK30                     2015-09-20  http://hydra.nixos.org/build/39401871
sbcl_1_2_5                  2015-09-20  http://hydra.nixos.org/build/39426091
prover9                     2014-09-30  http://hydra.nixos.org/build/39406476
rcs                         2015-08-25  http://hydra.nixos.org/build/39392037
gpac                        2015-09-24  http://hydra.nixos.org/build/39399470
virtuoso6                   2014-09-30  http://hydra.nixos.org/build/39398651
xlslib                      2015-09-24  http://hydra.nixos.org/build/39410387
ucommon                     2015-03-27  http://hydra.nixos.org/build/39414040
commoncpp2                  2014-09-30  http://hydra.nixos.org/build/39420117
virtuoso                    2014-09-21  http://hydra.nixos.org/build/39399978
miniHttpd                   2014-09-30  http://hydra.nixos.org/build/39392925
mpack                       2014-09-26  http://hydra.nixos.org/build/39399535
nbd                         2014-09-26  http://hydra.nixos.org/build/39401367
newsbeuter-dev              2014-07-29  http://hydra.nixos.org/build/39406259
gimp_2_8                    2015-09-20  http://hydra.nixos.org/build/39436271
gimp                        2015-09-20  http://hydra.nixos.org/build/39435976
zabbix20.agent              2014-09-30  http://hydra.nixos.org/build/39393242
gst_all_1.gst-plugins-good  2015-09-20  http://hydra.nixos.org/build/39408506
ocaml_4_00_1                2014-09-30  http://hydra.nixos.org/build/39399526
inadyn                      2014-09-30  http://hydra.nixos.org/build/39426389
gst_all_1.gst-plugins-bad   2015-09-20  http://hydra.nixos.org/build/39392970
zabbix.agent                2014-09-30  http://hydra.nixos.org/build/39421412
cmake-2_8                   2015-09-24  http://hydra.nixos.org/build/39399443
liblastfm                   2015-08-06  http://hydra.nixos.org/build/39421812
newsbeuter                  2014-07-29  http://hydra.nixos.org/build/39396605
sdcv                        2014-09-26  http://hydra.nixos.org/build/39412928
 2016-09-01 20:39:33 +03:00
Adrien Devresse
28d2d78b55 neuron: fix issue with incorrectly prefixed python path 2016-09-01 13:41:26 +02:00
Tuomas Tynkkynen
8c4aeb1780 Merge staging into master 
Brings in:
    - changed output order for multiple outputs:
      https://github.com/NixOS/nixpkgs/pull/14766
    - audit disabled by default
      https://github.com/NixOS/nixpkgs/pull/17916

 Conflicts:
	pkgs/development/libraries/openldap/default.nix
 2016-09-01 13:27:27 +03:00
Frederik Rietdijk
684f08166c fixup 2016-09-01 12:03:10 +02:00
Adrien Devresse
ae2800378f neuron: fix issue #17914 -> Add python bindings to neuron derivation and minor fixes 
- Add support for python bindings
- make neuron respect standard pythonpath prefix
- force exec_prefix == prefix to respect standard nix file hierarchy
- normalize indentation
- propagate dependencies necessary for nrniv_makefile usage
- Add support for darwin
 2016-09-01 12:03:10 +02:00
Mohammed Yaseen Mowzer
921682a4d5 geogebra: 5.0.265.0 -> 5.0.271.0 2016-08-31 18:31:56 +02:00
Tuomas Tynkkynen
b87a2245b1 root: Fix libc dev reference 2016-08-31 12:54:28 +03:00
Tuomas Tynkkynen
d3dc3d4130 Merge remote-tracking branch 'dezgeg/shuffle-outputs' into staging 
https://github.com/NixOS/nixpkgs/pull/14766
 2016-08-30 12:43:37 +03:00
Tuomas Tynkkynen
aef35c52f0 treewide: Fix output references to libX11 2016-08-30 03:40:23 +03:00
Tuomas Tynkkynen
c3bcb4e1ce treewide: Use explicit 'dev' references to glibc 2016-08-30 03:11:09 +03:00
Vincent Laporte
17af87323d maxima: 5.36.1 -> 5.38.1 2016-08-29 15:52:05 +02:00
Robin Gloster
005a147f92
sage: fix build 
closes #17842
 2016-08-29 12:46:51 +00:00
obadz
57ddc155fc Merge branch 'master' into staging 
Conflicts:
	pkgs/games/scummvm/default.nix
 2016-08-28 12:20:59 +01:00
Gabriel Ebner
497b3cabcc libqalculate, qalculate-gtk: 0.9.8 -> 0.9.9 2016-08-28 10:40:33 +02:00
obadz
3de6e5be50 Merge branch 'master' into staging 
Conflicts:
      pkgs/applications/misc/navit/default.nix
      pkgs/applications/networking/mailreaders/alpine/default.nix
      pkgs/applications/networking/mailreaders/realpine/default.nix
      pkgs/development/compilers/ghc/head.nix
      pkgs/development/libraries/openssl/default.nix
      pkgs/games/liquidwar/default.nix
      pkgs/games/spring/springlobby.nix
      pkgs/os-specific/linux/kernel/perf.nix
      pkgs/servers/sip/freeswitch/default.nix
      pkgs/tools/archivers/cromfs/default.nix
      pkgs/tools/graphics/plotutils/default.nix
 2016-08-27 23:54:54 +01:00
Nikolay Amiantov
1db4cb750c gravit: fix build 2016-08-28 01:04:18 +03:00
Robin Gloster
9f80e55428
openmodelica: disable format hardening 2016-08-27 21:54:17 +00:00
Robin Gloster
191896e63a
qfsm: disable format hardening 2016-08-27 21:53:49 +00:00
Robin Gloster
eddc0a5549
treewide: fix darwin builds by using getOutput 
This fixes eval for pkgs referring to optional static output
 2016-08-25 08:44:20 +00:00
Franz Pletz
df275f5b85 treewide: fix darwin builds by referring to stdenv's libc 2016-08-25 02:56:25 +02:00
Robin Gloster
f00c750014 qgroundcontrol: remove unused overrideCC and comment 2016-08-24 22:41:41 +00:00
Robin Gloster
13d7e83bf1 perseus: use default gcc 2016-08-24 22:41:41 +00:00
Robin Gloster
bd44c7fd70 boolector: fix build with multiple outputs 2016-08-24 18:19:40 +00:00
obadz
0e8d2725dc Merge branch 'master' into staging 2016-08-23 18:50:06 +01:00
Tuomas Tynkkynen
282277dbc8 treewide: Use more makeBinPath 2016-08-23 01:18:10 +03:00
obadz
24a9183f90 Merge branch 'hardened-stdenv' into staging 
Closes #12895

Amazing work by @globin & @fpletz getting hardened compiler flags by
enabled default on the whole package set
 2016-08-22 01:19:35 +01:00
Michael Raskin
14736fcf4c openmodelica: fix libgfortran.so search 2016-08-20 21:52:21 +02:00
Austin Seipp
cc7b072157 nixpkgs: abc-verifier 20160813 -> 20160818 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-08-19 01:55:13 +00:00
Robin Gloster
99cb230b47 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-14 09:09:20 +00:00
Austin Seipp
97e5b88d06 nixpkgs: abc-verifier 20150614 -> 20160813 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-08-13 17:48:42 +00:00
Franz Pletz
bd4490e277 Merge branch 'master' into hardened-stdenv 2016-08-13 16:59:55 +02:00
Luca Bruno
27f294f38d Merge pull request #17589 from cmfwyp/sagemath 
sagemath: update mirrors, fix TeX Live dependency
 2016-08-12 21:58:41 +01:00
Robin Gloster
b7787d932e Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-12 09:46:53 +00:00
Robin Gloster
40d217b90e Merge pull request #17657 from matthewbauer/darwin-misc 
Darwin misc. fixes
 2016-08-11 16:41:34 +00:00
Michael Raskin
d1951974df golly: 2.7 -> 2.8 2016-08-11 17:57:35 +02:00
Michael Raskin
da4b7afea8 pari: 2.7.5 -> 2.7.6 2016-08-11 17:57:35 +02:00
Matthew Bauer
96322f6926 bcftools: fix darwin building 
gcc not available
 2016-08-10 22:48:19 -05:00
Matthew Bauer
ee63056476 aspino: patch to use c++ instead of g++ 2016-08-10 22:29:18 -05:00
Matthew Bauer
b3cb07e130 lie: only build on linux 
Darwin build fails from conflicts in libSystem:

In file included from altdom.c:1:
In file included from /private/var/folders/7t/4vz31njj37b8y_bg6z3t7tk00000gn/T/nix-build-LiE-2.2.2.drv-0/LiE/lie.h:34:
In file included from /nix/store/9ll4m9yx854hr64fn1w9ra3qimm3pzdk-Libsystem-osx-10.9.5/include/string.h:176:
/nix/store/9ll4m9yx854hr64fn1w9ra3qimm3pzdk-Libsystem-osx-10.9.5/include/strings.h:73:7: error: redefinition of 'index' as different kind of symbol
char    *index(const char *, int) __POSIX_C_DEPRECATED(200112L);
         ^
/private/var/folders/7t/4vz31njj37b8y_bg6z3t7tk00000gn/T/nix-build-LiE-2.2.2.drv-0/LiE/lie.h:6:14: note: previous definition is here
typedef long index;
             ^
1 error generated.
 2016-08-10 21:06:22 -05:00
Matthew Bauer
d4b1289592 lie: LiE -> lie 
Attributes need to be lowercase, see https://nixos.org/nixpkgs/manual/#sec-package-naming.
 2016-08-10 21:04:16 -05:00
obadz
8df7571bbc geogebra: don't build on hydra since derivation just unpacks jars 2016-08-10 14:35:14 +01:00
Mohammed Yaseen Mowzer
04f0cb86d0 geogebra: init at 5.0.265.0 
Closes #17400
 2016-08-10 14:32:09 +01:00
cmfwyp
179d992427
sage: fix TeX Live input 
The Sage derivation had texLive, the old TeX Live packaging which
is now marked as broken, as a build input. This replaces it by the
current TeX Live packaging.

However, the build remains broken. One of the problems can be
solved by patching the hashbangs at the beginning of build scripts,
but the build still gets stuck while building ncurses.
 2016-08-07 23:18:47 -04:00
Tuomas Tynkkynen
fdde95e096 msieve: Broken on i686 
http://hydra.nixos.org/build/38236222
 2016-08-06 17:06:45 +03:00
Tuomas Tynkkynen
f87f37c1ee bwa: Broken on i686 
http://hydra.nixos.org/build/38236956
 2016-08-06 17:06:45 +03:00
Erik Rybakken
37aff96daf ripser: init at 1.0 (#17481) 2016-08-04 10:21:48 +02:00
Robin Gloster
1b979d8384 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-03 13:34:44 +00:00
Tuomas Tynkkynen
21f17d69f6 treewide: Add lots of meta.platforms 
Build-tested on x86_64 Linux & Mac.
 2016-08-02 21:42:43 +03:00
Tuomas Tynkkynen
102ffa6be7 treewide: Wrap some really long package descriptions 2016-08-02 21:17:44 +03:00
Tuomas Tynkkynen
59ce911810 treewide: Some EOF-whitespace fixes 2016-08-02 21:17:44 +03:00
Tuomas Tynkkynen
1bf5ded193 treewide: Lots of meta.hydraPlatforms -> meta.platforms 
In all of these files, there is no meta.platforms but only
meta.hydraPlatforms, which doesn't seem to have any purpose except being
inconsistent.
 2016-08-02 21:17:44 +03:00
Robin Gloster
63c7b4f9a7 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-31 20:51:34 +00:00
Robert Helgesson
8878e8ec05 leo2: remove use of builderDefsPackage (#17398) 2016-07-31 13:57:29 +02:00
Ram Kromberg
78d82f33ac alliance: 5.0 -> 5.1.1 (#17353) 2016-07-30 15:35:51 +01:00
Dmitry Kalinkin
4449ecb617 root: 6.04.16 -> 6.04.18 (#17265) 
root: compile against external gsl

Revert "Revert "root: enable parallel building""

This reverts commit ee1a10ee6b.

ROOT has no problems with parallel build. The problems that caused the
original commit were not related to parallel building.
 2016-07-30 01:41:37 +01:00
Robin Gloster
154af9e67d Merge pull request #9499 from khumba/scilab-bin-5 
scilab-bin: init at 5.5.2
 2016-07-28 16:43:08 +02:00
Marco Maggesi
c28eb6c2ba Update HOL Light to version 2016-07-23. 2016-07-28 15:56:20 +02:00
Bryan Gardiner
ed071594e5
scilab-bin: init at 5.5.2 
A built-from-source Scilab 5 package looks to be a lot more work, and some
dependencies are missing from Nixpkgs, but the binary version with bundled
dependencies works.
 2016-07-27 21:30:12 -07:00
Gabriel Ebner
f970bc67c7 lean: 20160117 -> 2016-07-05 
Fixes #17260.
 2016-07-27 11:01:45 +02:00
Robin Gloster
f222d98746 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-25 12:47:13 +00:00
Gabriel Ebner
9082476478 cvc4: 1.4 -> 1.5pre-smtcomp2016 2016-07-24 13:11:17 +02:00
Robert Helgesson
1012508356 stellarium: 0.14.2 -> 0.14.3 2016-07-22 23:13:35 +02:00
Robert Helgesson
1bedecb4f9 stellarium: wrap binary using wrapQtProgram 
Fixes #13582 where Stellarium segfaults when starting.
 2016-07-22 22:21:17 +02:00
Gabriel Ebner
82f087944b metis-prover: 2.3.20160102 -> 2.3.20160713 2016-07-21 18:41:26 +02:00
Robin Gloster
203846b9de Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-19 10:37:02 +00:00
Gabriel Ebner
530a9ab981 Merge remote-tracking branch 'vbgl/why3-0.87.1' 2016-07-18 13:33:50 +02:00
Ben Darwin
a896233396 jags: 3.4.0 -> 4.1.0 (#16804) 
* jags: 3.4.0 -> 4.1.0
* unbreak rjags and dependent packages
 2016-07-18 13:11:18 +02:00
vbgl
d7cfdc581c coq: 8.5pl1 -> 8.5pl2 (#16863) 2016-07-18 11:33:51 +02:00
Nikolay Amiantov
aefd8c420c Merge pull request #17043 from womfoo/fix/qmake4Hook-builds 
reintroduce qmake .pro files after qmake4Hook changes
 2016-07-18 00:11:24 +04:00
Kranium Gikos Mendoza
dd778f1756 fritzing: fix qmake4Hook build 
pass phoenix.pro and return unpack logic which were removed in 0b88755
 2016-07-17 22:40:27 +08:00
Joachim F
d9701350f9 Merge pull request #16951 from heilkn/lie 
LiE: include forgotten file INFO.a by installation
 2016-07-16 19:54:23 +02:00
Michael Raskin
61a3610853 tptp: 6.3.0 -> 6.4.0 2016-07-16 11:34:32 +02:00
Konstantin Heil
c0656fe0c1 LiE: include forgotten file INFO.a by installation 2016-07-14 14:18:57 +02:00
Franz Pletz
26dd9acba5 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-07-09 13:21:28 +02:00
Konstantin Heil
b92c429799 LiE: init at 2.2.2 2016-06-30 21:04:41 +02:00
Vladimír Čunát
3afa246038 Merge branch 'staging' 
This includes a security update of expat.
 2016-06-29 07:47:04 +02:00
Austin Seipp
25bf4a5634 cryptoverif: init at 1.22 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-06-28 04:37:29 +00:00
Austin Seipp
a69799c740 statverif: init at 1.86pl4 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-06-28 04:36:11 +00:00
Austin Seipp
be19637b2a proverif: init at 1.94 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-06-28 04:36:11 +00:00
Ta'iř sj Ořit
3832ebde8b gephi: init at 0.9.1 (#16071) 2016-06-26 22:40:00 +02:00
mimadrid
5c7a75412e
igv: init at 2.3.77 2016-06-26 19:27:56 +02:00
Joachim Fasting
46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1 
bcftools: init at 1.3.1
 2016-06-24 22:15:51 +02:00
mimadrid
d91d245f16
bcftools: init at 1.3.1 2016-06-24 21:08:17 +02:00
mimadrid
14feec44e4
samtools: refactoring 2016-06-24 21:08:17 +02:00
Vladimír Čunát
6b27ceb006 Merge 'master' into staging and re-revert merge 
... from staging to master, reverted temporarily in aa9a04883e.
 2016-06-23 12:09:03 +02:00
Vladimír Čunát
aa9a04883e Revert "Merge branch 'staging'" due to glibc 
The main output started to retain dependency on bootstrap-tools; see
https://github.com/NixOS/nixpkgs/pull/15867#issuecomment-227949096

This reverts commit c05d829598, reversing
changes made to f073df60d6.
 2016-06-23 09:25:10 +02:00
Vladimír Čunát
c05d829598 Merge branch 'staging' 2016-06-22 10:49:56 +02:00
Gabriel Ebner
0a8e613cea aspino: init at 2016-01-31 2016-06-21 13:55:28 +02:00
Gabriel Ebner
8f84a5cb08 glucose, glucose-syrup: init at 4.0 2016-06-21 13:26:51 +02:00
Gabriel Ebner
9c5588e99f spass: 3.7 -> 3.9 2016-06-21 08:18:20 +02:00
Michael Raskin
ca495a53a5 tptp: fix hash 2016-06-20 18:38:08 +02:00
Bjørn Forsman
bd01fad0ed Captialize meta.description of all packages 
In line with the Nixpkgs manual.

A mechanical change, done with this command:

  find pkgs -name "*.nix" | \
      while read f; do \
          sed -e 's/description\s*=\s*"\([a-z]\)/description = "\u\1/' -i "$f"; \
      done

I manually skipped some:

* Descriptions starting with an abbreviation, a user name or package name
* Frequently generated expressions (haskell-packages.nix)
 2016-06-20 13:55:52 +02:00
Gabriel Ebner
727716cd82 speedcrunch: 0.11-alpha -> 0.11 2016-06-19 18:45:04 +02:00
Gabriel Ebner
e5b3b685f4 libqalculate, qalculate-gtk: 0.9.7 -> 0.9.8 2016-06-19 17:33:45 +02:00
Gabriel Ebner
cc0b3bbcc2 minisat: support clang 2016-06-19 15:19:25 +02:00
Vladimír Čunát
e757404555 Merge branch 'master' into staging 
Hydra nixpkgs: ?compare=1279790
 2016-06-19 12:33:04 +02:00
Vladimír Čunát
97c484a10f treewide: fix #include errors after gcc-5.4 
They were mostly missing <cmath> or <math.h>.
 2016-06-19 10:18:30 +02:00
mimadrid
aa8eba9d95
weka: 3.6.12 -> 3.8.0 
Closes #16055
 2016-06-16 15:47:48 +02:00
mimadrid
9b7a53d9cb
cytoscape: init at 3.4.0 
Closes #16197
 2016-06-16 15:47:21 +02:00
Robin Gloster
8031cba2ab Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-06-10 09:27:04 +00:00
Christopher Lübbemeier
ac4903284c gmsh: init at 2.12.0 2016-06-09 18:54:26 +02:00
Vincent Laporte
a577b3666e why3: 0.87.0 -> 0.87.1 2016-06-09 09:51:38 +02:00
Luis Pedro Coelho
bd617cb185 init bwa at 0.7.15 
Closes #16064
 2016-06-08 17:25:20 +01:00
Tuomas Tynkkynen
f1d83444a5 openmodelica: Use makeLibraryPath 2016-06-07 21:18:02 +03:00
Joachim Fasting
e65698db0b Merge pull request #15939 from ChrisJefferson/fix-gap 
gap : 4.4.12 -> 4.8.3
 2016-06-04 01:14:09 +02:00
Chris Jefferson
75f793bbb2 gap : 4.4.12 -> 4.8.3 2016-06-03 19:01:12 +01:00
Tuomas Tynkkynen
bac26e08db Fix lots of fetchgit hashes (fallout from #15469) 2016-06-03 17:17:08 +03:00
Robin Gloster
2d382f3d98 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-30 19:39:34 +00:00
Nikolay Amiantov
51f479465c qgroundcontrol: fix build 2016-05-29 19:51:22 +03:00
Moritz Ulrich
7b2fab05f3 Merge pull request #15606 from dvc94ch/fpga-toolchain-updates 
FPGA toolchain updates
 2016-05-28 15:41:10 +02:00
Vladimír Čunát
e4832c7541 Merge branch 'staging' 
Includes a security update of libxml2.
 2016-05-27 15:58:40 +02:00
Vladimír Čunát
81039713fa Merge branch 'master' into staging 
... to get the systemd update (rebuilding ~7k jobs).
 2016-05-26 16:50:22 +02:00
Vladimír Čunát
ee1a10ee6b Revert "root: enable parallel building" 
This reverts commit 2991fdca52.
Hydra builds often report missing various files.
 2016-05-26 16:27:59 +02:00
Tobias Geerinckx-Rice
dce1edf946
samtools: 1.3 -> 1.3.1 2016-05-25 02:06:47 +02:00
Nicolò Balzarotti
c1c0c99af3 yarp: 2.3.64 -> 2.3.65 (#15662) 2016-05-24 13:30:52 +02:00
David Craven
509ce20ded verilog: 0.97 -> 2016.05.21 2016-05-22 07:38:57 +02:00