JakeHillion/nixpkgs
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23282 Commits

Author SHA1 Message Date
Herwig Hochleitner
c2339ed75a chromium: replace ninja workaround with upstream patch 
https://github.com/NixOS/nixpkgs/issues/35296

This reverts workaround commit e3cb6e7772.
 2018-02-27 00:08:38 +01:00
Jörg Thalheim
d8ef48ec7e
Merge pull request #35656 from jfrankenau/fix-neomutt 
neomutt: fix smime_keys openssl path, closes #35654
 2018-02-26 23:08:05 +00:00
Vladimír Čunát
f5ce8f86df
Revert "Merge staging at '8d490ca9934d0' into master" 
This reverts commit fc23242220, reversing
changes made to 754816b84b.
We don't have many binaries yet.  Comment on the original merge commit.
 2018-02-26 22:53:18 +01:00
Vincent Laporte
c5eeb838c8 smplayer: 17.9.0 -> 18.2.2 2018-02-26 19:52:58 +01:00
Ben Gamari
5f3b59c0d0 notmuch: Fix configure invocation 2018-02-26 12:00:03 -05:00
Frederik Rietdijk
fc23242220 Merge staging at '8d490ca9934d0c01e1e9ade455657e54e2e843c0' into master 2018-02-26 13:05:32 +01:00
Robin Gloster
a2a922d5c8
transmission: 2.92 -> 2.93 2018-02-26 12:22:09 +01:00
Pascal Wittmann
24534d00b4
filezilla: 3.30.0 -> 3.31.0 2018-02-26 11:43:31 +01:00
Frederik Rietdijk
123bfb6978
Merge pull request #35623 from ryantm/auto-update/dvdstyler-3.0.3-to-3.0.4 
dvdstyler: 3.0.3 -> 3.0.4
 2018-02-26 10:17:42 +00:00
Michael Raskin
025e1a3bec stumpwm: passthrough contrib 2018-02-26 11:17:36 +01:00
Franz Pletz
dedd9d19de
Merge pull request #35645 from ryantm/auto-update/flacon-2.1.1-to-4.0.0 
flacon: 2.1.1 -> 4.0.0
 2018-02-26 10:05:13 +00:00
adisbladis
e046d8bc08
Merge pull request #35555 from ryantm/auto-update/bcftools-1.6-to-1.7 
bcftools: 1.6 -> 1.7
 2018-02-26 17:39:46 +08:00
adisbladis
df4d03ec1d
Merge pull request #35506 from ryantm/auto-update/asunder-2.8-to-2.9.2 
asunder: 2.8 -> 2.9.2
 2018-02-26 17:37:18 +08:00
Johannes Frankenau
1b2024fb98 neomutt: fix smime_keys openssl path, closes #35654 2018-02-26 09:13:05 +01:00
adisbladis
40fd69c8b7
Merge pull request #35644 from ryantm/auto-update/feh-2.23-to-2.23.2 
feh: 2.23 -> 2.23.2
 2018-02-26 15:35:17 +08:00
Ryan Mulligan
72a22296dd cryptoverif: 1.22 -> 1.28 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28/bin/cryptoverif --help` got 0 exit code
- found 1.28 with grep in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
- found 1.28 in filename of file in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
 2018-02-26 08:32:20 +01:00
adisbladis
f744dd9e25
Merge pull request #35605 from ryantm/auto-update/daq-2.0.6-to-2.2.2 
daq: 2.0.6 -> 2.2.2
 2018-02-26 15:20:52 +08:00
Frederik Rietdijk
da69609d98
Merge pull request #35626 from ryantm/auto-update/devilspie2-0.42-to-0.43 
devilspie2: 0.42 -> 0.43
 2018-02-26 07:07:21 +00:00
adisbladis
42cf78c562
Merge pull request #35615 from ryantm/auto-update/drumkv1-0.8.5-to-0.8.6 
drumkv1: 0.8.5 -> 0.8.6
 2018-02-26 14:08:16 +08:00
adisbladis
b089f4a69a
Merge pull request #35649 from ryantm/auto-update/fluidsynth-1.1.8-to-1.1.9 
fluidsynth: 1.1.8 -> 1.1.9
 2018-02-26 13:37:44 +08:00
Ryan Mulligan
b05cc4d9a5 fluidsynth: 1.1.8 -> 1.1.9 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9/bin/fluidsynth -h` got 0 exit code
- ran `/nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9/bin/fluidsynth --help` got 0 exit code
- ran `/nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9/bin/fluidsynth -V` and found version 1.1.9
- ran `/nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9/bin/fluidsynth --version` and found version 1.1.9
- ran `/nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9/bin/fluidsynth -h` and found version 1.1.9
- ran `/nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9/bin/fluidsynth --help` and found version 1.1.9
- found 1.1.9 with grep in /nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9
- found 1.1.9 in filename of file in /nix/store/lahkxc281j7vxzivbp68c71k6jgjzmcj-fluidsynth-1.1.9
 2018-02-25 21:28:59 -08:00
Ryan Mulligan
21adaec5fb flacon: 2.1.1 -> 4.0.0 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0/bin/flacon -h` got 0 exit code
- ran `/nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0/bin/flacon --help` got 0 exit code
- ran `/nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0/bin/flacon help` got 0 exit code
- ran `/nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0/bin/flacon --version` and found version 4.0.0
- ran `/nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0/bin/.flacon-wrapped -h` got 0 exit code
- ran `/nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0/bin/.flacon-wrapped --help` got 0 exit code
- ran `/nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0/bin/.flacon-wrapped --version` and found version 4.0.0
- found 4.0.0 with grep in /nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0
- found 4.0.0 in filename of file in /nix/store/sfixg95yp8qsdhilwcf51g7380q33x7s-flacon-4.0.0
 2018-02-25 21:24:43 -08:00
Ryan Mulligan
e78c4aeb96 feh: 2.23 -> 2.23.2 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/feh -h` got 0 exit code
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/feh --help` got 0 exit code
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/feh -v` and found version 2.23.2
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/feh --version` and found version 2.23.2
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/.feh-wrapped -h` got 0 exit code
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/.feh-wrapped --help` got 0 exit code
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/.feh-wrapped -v` and found version 2.23.2
- ran `/nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2/bin/.feh-wrapped --version` and found version 2.23.2
- found 2.23.2 with grep in /nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2
- found 2.23.2 in filename of file in /nix/store/9r2xpmvwq8vslxz1p3kv7x0ia0j2ghkx-feh-2.23.2
 2018-02-25 21:22:19 -08:00
Ryan Mulligan
ff67268406 dvdstyler: 3.0.3 -> 3.0.4 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4/bin/dvdstyler --help` got 0 exit code
- ran `/nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4/bin/dvdstyler --version` and found version 3.0.4
- ran `/nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4/bin/.dvdstyler-wrapped -h` got 0 exit code
- ran `/nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4/bin/.dvdstyler-wrapped --help` got 0 exit code
- ran `/nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4/bin/.dvdstyler-wrapped -v` and found version 3.0.4
- ran `/nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4/bin/.dvdstyler-wrapped --version` and found version 3.0.4
- ran `/nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4/bin/.dvdstyler-wrapped -h` and found version 3.0.4
- found 3.0.4 with grep in /nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4
- found 3.0.4 in filename of file in /nix/store/199jnnl507db7vsacx638sp3ql5m02av-dvdstyler-3.0.4
 2018-02-25 20:29:45 -08:00
Jan Tojnar
c65cd765f6
gpredict: 1.3 → 2.2.1 2018-02-26 05:26:41 +01:00
Ryan Mulligan
8b2edecf72 drumkv1: 0.8.5 -> 0.8.6 
Semi-automatic update. These checks were performed:

- built on NixOS
- found 0.8.6 with grep in /nix/store/k2mm58aav72xhc9kf5a8ysb6yxrbnj6c-drumkv1-0.8.6
- found 0.8.6 in filename of file in /nix/store/k2mm58aav72xhc9kf5a8ysb6yxrbnj6c-drumkv1-0.8.6
 2018-02-25 20:19:57 -08:00
Ryan Mulligan
85cb38094e devilspie2: 0.42 -> 0.43 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/2bw1nsnhxb296d0kn7xdq6dvkpanixcx-devilspie2-0.43/bin/devilspie2 -h` got 0 exit code
- ran `/nix/store/2bw1nsnhxb296d0kn7xdq6dvkpanixcx-devilspie2-0.43/bin/devilspie2 --help` got 0 exit code
- ran `/nix/store/2bw1nsnhxb296d0kn7xdq6dvkpanixcx-devilspie2-0.43/bin/devilspie2 help` got 0 exit code
- found 0.43 in filename of file in /nix/store/2bw1nsnhxb296d0kn7xdq6dvkpanixcx-devilspie2-0.43
 2018-02-25 20:00:19 -08:00
Peter Hoeg
f9cc3c08e2
Merge pull request #35432 from timokau/syncthing-deprecate-inotify 
syncthing,qsyncthingtray: remove syncthing-inotify
 2018-02-26 11:04:33 +08:00
Ryan Mulligan
5db347a1f9 daq: 2.0.6 -> 2.2.2 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/k309zjlgh7pn9h1gpzf5rrmnxzmfifil-daq-2.2.2/bin/daq-modules-config -h` got 0 exit code
- ran `/nix/store/k309zjlgh7pn9h1gpzf5rrmnxzmfifil-daq-2.2.2/bin/daq-modules-config --help` got 0 exit code
- ran `/nix/store/k309zjlgh7pn9h1gpzf5rrmnxzmfifil-daq-2.2.2/bin/daq-modules-config help` got 0 exit code
- found 2.2.2 with grep in /nix/store/k309zjlgh7pn9h1gpzf5rrmnxzmfifil-daq-2.2.2
- found 2.2.2 in filename of file in /nix/store/k309zjlgh7pn9h1gpzf5rrmnxzmfifil-daq-2.2.2
 2018-02-25 18:49:14 -08:00
adisbladis
e8d0563638
Merge pull request #35566 from ryantm/auto-update/bowtie2-2.3.4-to-2.3.4.1 
bowtie2: 2.3.4 -> 2.3.4.1
 2018-02-26 09:47:03 +08:00
adisbladis
6b418924b7
Merge pull request #35573 from ryantm/auto-update/bro-2.5.2-to-2.5.3 
bro: 2.5.2 -> 2.5.3
 2018-02-26 09:39:34 +08:00
adisbladis
780e1a34e1
Merge pull request #35583 from ryantm/auto-update/cbc-2.9.5-to-2.9.9 
cbc: 2.9.5 -> 2.9.9
 2018-02-26 09:33:53 +08:00
Herwig Hochleitner
3bae30289c chromium: 64.0.3282.167 -> 64.0.3282.186 2018-02-25 23:56:58 +01:00
Herwig Hochleitner
e3cb6e7772 chromium: build mojo_platform_bindings before chrome 
this is an attempt to prevent spurious errors due to parallel make

see https://github.com/NixOS/nixpkgs/issues/35296
 2018-02-25 23:56:58 +01:00
Vasyl Solovei
1865ce4abc tdesktop: add native notifications support 
By patching paths to required libs in sources, application
is able to load them and provide an option to use native notifications.
 2018-02-26 01:46:11 +03:00
Ryan Mulligan
79795b44f9 cbc: 2.9.5 -> 2.9.9 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` and found version 2.9.9
- found 2.9.9 with grep in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
- found 2.9.9 in filename of file in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
 2018-02-25 14:03:37 -08:00
Robert Helgesson
48479b66df
josm: 13265 -> 13367 2018-02-25 22:44:44 +01:00
Nikolay Amiantov
7f1b8d744f cntk: fix build without CUDA 2018-02-25 22:50:20 +03:00
Nikolay Amiantov
3179002f61 mxnet: 0.11.0 -> 1.1.0 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
6f96122d5b caffe: add nccl support 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
25079ad238 caffe: depend on opencv3 
openblas is used since it's propagated from OpenCV and ATLAS compiled without
architecture-specific optimizations is generally slower than OpenBLAS as I
heard.
 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
1bfca90bf7 cntk: 2.2 -> 2.4 
Comment for `broken` indicates that it never worked at all, which is strange
since on my machine it did. Anyway it works now for me.
 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
605a4d4eed cura: 3.1.0 -> 3.2.1 2018-02-25 22:24:09 +03:00
Nikolay Amiantov
9813473fa8 curaengine: 3.0.3 -> 3.2.1 2018-02-25 22:24:08 +03:00
Nikolay Amiantov
08f8ad26b3 treewide: unquote homepage in my packages 
I don't like this personally but we have #27809 as a precedent.
 2018-02-25 22:24:08 +03:00
Ryan Mulligan
899376448b bro: 2.5.2 -> 2.5.3 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3/bin/bro-config --version` and found version 2.5.3
- ran `/nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3/bin/binpac -V` and found version 2.5.3
- ran `/nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3/bin/binpac -v` and found version 2.5.3
- ran `/nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3/bin/binpac --version` and found version 2.5.3
- ran `/nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3/bin/bro -v` and found version 2.5.3
- ran `/nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3/bin/bro --version` and found version 2.5.3
- found 2.5.3 with grep in /nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3
- found 2.5.3 in filename of file in /nix/store/l58hq30xhskjp4cvqpjjdxzjqi9q21wi-bro-2.5.3
 2018-02-25 11:03:26 -08:00
Tim Steinbach
3187f3fe25
containerd: 1.0.1 -> 1.0.2 2018-02-25 13:32:12 -05:00
Ryan Mulligan
bc730862d5 bowtie2: 2.3.4 -> 2.3.4.1 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` and found version 2.3.4.1
- found 2.3.4.1 with grep in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
- found 2.3.4.1 in filename of file in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
 2018-02-25 09:45:04 -08:00
Ryan Mulligan
9af7602b8a bcftools: 1.6 -> 1.7 
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -v` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats --help` got 0 exit code
- found 1.7 with grep in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7
 2018-02-25 09:02:06 -08:00
Jan Tojnar
a31d98f312
tree-wide: autorename gnome packages to use dashes 2018-02-25 17:41:16 +01:00