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5494 Commits

Author SHA1 Message Date
Chris Ostrouchov
11c3fe2258
pythonPackages.selectors2: init at 2.0.1 
Added package becuase now dependency of ncclient.
 2018-09-07 10:22:22 -04:00
Daniël de Kok
d261df5fc1 python2Packages.spacy_models: update all models to version 2.0.0 (#46182) 
Update the model list to those models that are compatibly with the
latest spaCy version:

https://github.com/explosion/spacy-models/blob/master/compatibility.json

The updated model file evaluates to the following packages:

python2Packages.spacy_models.de_core_news_sm
python2Packages.spacy_models.en_core_web_lg
python2Packages.spacy_models.en_core_web_md
python2Packages.spacy_models.en_core_web_sm
python2Packages.spacy_models.en_vectors_web_lg
python2Packages.spacy_models.es_core_news_md
python2Packages.spacy_models.es_core_news_sm
python2Packages.spacy_models.fr_core_news_md
python2Packages.spacy_models.fr_core_news_sm
python2Packages.spacy_models.it_core_news_sm
python2Packages.spacy_models.nl_core_news_sm
python2Packages.spacy_models.pt_core_news_sm
python2Packages.spacy_models.xx_ent_wiki_sm
python3Packages.spacy_models.de_core_news_sm
python3Packages.spacy_models.en_core_web_lg
python3Packages.spacy_models.en_core_web_md
python3Packages.spacy_models.en_core_web_sm
python3Packages.spacy_models.en_vectors_web_lg
python3Packages.spacy_models.es_core_news_md
python3Packages.spacy_models.es_core_news_sm
python3Packages.spacy_models.fr_core_news_md
python3Packages.spacy_models.fr_core_news_sm
python3Packages.spacy_models.it_core_news_sm
python3Packages.spacy_models.nl_core_news_sm
python3Packages.spacy_models.pt_core_news_sm
python3Packages.spacy_models.xx_ent_wiki_sm
 2018-09-07 12:58:53 +02:00
Christopher Ostrouchov
66e1288962 pythonPackages.kubernetes: add missing dependency (#46179) 
fix build issue from missing dependency `adal`. This is due to `adal`
being added as a dependency in July
23rd. 9afec55f4a (diff-b4ef698db8ca845e5845c4618278f29a)
 2018-09-07 11:25:53 +02:00
Christopher Ostrouchov
427e4910ec pythonPackages.ordered-set: add missing dependency (#46183) 
missing dependency for doing tests (pytestrunner) added three months
ago June c0b9308988.
 2018-09-07 09:26:07 +02:00
Christopher Ostrouchov
6586765a8f pythonPackages.phonopy: refactor (#46161) 
Fixing phonopy not building. Tests were moved on Jul 30.
 2018-09-07 08:41:24 +02:00
Christopher Ostrouchov
b5b48c0a91 pythonPackages.locustio: 0.8.1 -> 0.9.0 (#46191) 
Fixing build issue. Additionally fetching from github becuase pypi
packge does not come with README which is a buildtime dependency.
 2018-09-07 08:38:41 +02:00
Christopher Ostrouchov
b1d6d159aa pythonPackages.pyslurm: 20180604 -> 20180811 (#46187) 
Update version to support latest version of slurm. Fixes since
previously did not build.
 2018-09-07 08:28:12 +02:00
Christopher Ostrouchov
7bcc2870c7 pythonPackages.jupyterlab_launcher: refactor (#46178) 
jupyterlab_launcher does not support python version < 3.5. Disabled
for older versions
 2018-09-06 20:40:43 +02:00
Chris Ostrouchov
1d6fd65957 pythonPackages.geopandas: 0.3.0 -> 0.4.0 
Additionally fix issue with tests failing for 18.09 release.

Tests required url fetch. Disabled with "not web".
 2018-09-06 18:50:11 +02:00
Matthieu Coudron
13050ccc0b python3Packages.genanki: init at 0.6.0 
Library to generate anki flashcards.
 2018-09-06 18:31:57 +02:00
Jörg Thalheim
89571b255e
Merge pull request #45996 from teto/alot_completion 
[rdy] pythonPackages.alot: install zsh completion
 2018-09-06 11:28:09 +01:00
Jörg Thalheim
9a585658e2
Merge pull request #46132 from costrouc/costrouc/pymatgen-networkx-dependency 
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1
 2018-09-06 09:55:18 +01:00
Sarah Brofeldt
a59f244b2c
Merge pull request #46126 from flokli/gmpy-phe 
pythonPackages: cleanup gmpy[2], add phe
 2018-09-06 10:31:56 +02:00
Sarah Brofeldt
574f893507
Merge pull request #46124 from erosennin/pymetar-1.0 
pythonPackages.pymetar: 0.21 -> 1.0
 2018-09-06 10:26:32 +02:00
Jörg Thalheim
df2cc4121b
Merge pull request #46125 from ashgillman/nipype-futures-py2-only 
python.pkgs.nipype: Futures is python 2 only. Also fix building.
 2018-09-06 08:25:33 +01:00
Chris Ostrouchov
63cf879d6c
pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1 
Also 2018.8.10 does not build in previous state because auto updating
from pypi did not account for a new requirement `networkx`. This has
been added.
 2018-09-06 00:04:28 -04:00
Christopher Ostrouchov
ed130935c8
Merge branch 'master' into costrouc/dask-distributed 2018-09-05 23:53:23 -04:00
Chris Ostrouchov
4f70170f8a
pythonPackages.distributed: 1.15.1 -> 1.22.1 
The github repository was downloaded instead of the pypi repository
for testing (needed `conftest.py`). Major work was done on the
underlying dependencies to make distributed work on python 2.7,
3+. Note that the test **do** take a significant amount of time (10-15
minutes).

 - moved to `python-modules`
 - compatible with 2.7, 3+
 - all tests pass (previously tests were not run)
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
7b920172db
pythonPackages.pytest-repeat: init at 0.6.0 
- compatible with 2.7, 3+
 - all tests pass and running
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
05890dda3d
pythonPackages.joblib: 0.12.1 -> 0.12.2 
In order to get all the tests passing the Github repository was
downloaded instead of from pypi so that the `conftest.py` is
available.

In addition to updating the version:

  - compatible with 2.7, 3+ now
  - all tests are running and passing
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
3a56e314b8
pythonPackages.python-lz4: init at 2.1.0 
Fetching from github repository instead of pypi so that all tests can
be run.

 - compatible with 2.7, 3+
 - all tests pass
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov
5704642a3f
pythonPackages.pytest-faulthandler: init at 1.5.0 
- compatible with 2.7 and 3+
 - all test pass.
 2018-09-05 23:46:28 -04:00
Florian Klink
e053386c92 gmpy2: 2.0.6 -> 2.0.8 
Also move outside python-packages.nix
 2018-09-05 23:56:20 +02:00
Florian Klink
7339a4004c gmpy: move outside python-packages.nix 2018-09-05 23:56:20 +02:00
Florian Klink
f051f66c9a phe: init at 1.4.0 2018-09-05 23:56:20 +02:00
Robert Schütz
041043420f python.pkgs.py3status: fix build 2018-09-05 23:28:31 +02:00
Ashley Gillman
12c0dd5432 python.pkgs.nipype: Futures is python 2 only. Also fix building. 2018-09-05 22:26:34 +01:00
Andrey Golovizin
7de5708e9e pythonPackages.pymetar: enable tests 2018-09-05 23:08:47 +02:00
Andrey Golovizin
ee841c57bf pythonPackages.pymetar: 0.21 -> 1.0 2018-09-05 22:32:57 +02:00
Andrey Golovizin
085cc29323 pythonPackages.pymetar: fix license 2018-09-05 22:32:49 +02:00
Jethro Kuan
a9a380b259 pythonPackages.tflearn: 0.2.1 -> 0.3.2 (#46102) 2018-09-05 17:38:23 +01:00
Daniël de Kok
348a153781 pythonPackages.thinc: fix darwin build (#46092) 
thinc uses Accelerate on macOS as a blas library. Add the necessary
dependencies to allow building on unsandboxed Darwin machines.
 2018-09-05 16:22:52 +02:00
Daniël de Kok
da8475736e spacy: relax dependency versions 2018-09-05 10:39:03 +02:00
Daniël de Kok
ffb094f939 thinc: relax dependency version requirements 2018-09-05 10:29:01 +02:00
Andreas Rammhold
d814c98ec8 python.pkgs.pytest-fixture-config: disable tests (#46021) 
Tests seem to fail on all recent versions even outside of our build
system. The upstream CI tests seem to somehow succeed but I wasn't able
to reproduce that locally. For not it is probably best to disable them.
 2018-09-05 01:02:06 +02:00
xeji
d22e22e2dd
Merge pull request #45987 from danieldk/fix-vowpalwabbit 
vowpalwabbit: fix build against boost-python.
 2018-09-04 08:54:00 +02:00
Daniël de Kok
69d418aeac vowpalwabbit: mark broken on aarch64. 2018-09-04 07:43:53 +02:00
Michiel Leenaars
9692b7997c pythonPackages.authres: fix broken homepage 2018-09-03 23:52:27 +02:00
Daniël de Kok
e33be2ab56 Keras: fix build by updating expected dependencies. (#45992) 
Keras expects keras_preprocessing 1.0.2 and 1.0.4. 1.0.3 and 1.0.5
are respectively in nixpkgs.

ZHF #45960
 2018-09-03 21:59:36 +02:00
Daniël de Kok
fe7e89ba3b vowpal-wabbit: fix Darwin build. 
- Follow the same logic for finding boost-python as for Linux.
- Set DYLD_LIBRARY_PATH so that ctypes find_library can find
  boost-python.
- Do not use '-mt' suffix when linking against boost-serialization
  and boost-program_options on Darwin.
 2018-09-03 21:48:13 +02:00
Matthieu Coudron
97816bed33 pythonPackages.alot: install zsh completion 2018-09-04 02:22:58 +09:00
Daniël de Kok
875bb6bcb9 vowpalwabbit: fix build against boost-python. 
Patch setup.py to look for libboost_python{Major}{Minor}.
 2018-09-03 15:47:04 +02:00
Jörg Thalheim
d1c6c32230
Merge pull request #45964 from Mic92/irc 
python.pkgs.irc: 14.2.2 -> 16.4
 2018-09-03 01:36:07 +01:00
Jörg Thalheim
35c9408ca4 python.pkgs.irc: 14.2.2 -> 16.4 2018-09-03 01:25:03 +01:00
Jörg Thalheim
9bc1b13983 python.pkgs.jaraco_logging: 1.5 -> 1.5.2 2018-09-03 01:25:03 +01:00
Jörg Thalheim
7cd2bf48f7 python.pkgs.jaraco_text: 1.7 -> 1.10.1 2018-09-03 01:25:02 +01:00
Jörg Thalheim
c4bf056c08 python.pkgs.jaraco.collections: 1.3.2 -> 1.5.3 2018-09-03 01:25:02 +01:00
Jörg Thalheim
6b1b6c84bf python.pkgs.jaraco.itertools: 1.7.1 -> 2.4 2018-09-03 01:25:02 +01:00
Jörg Thalheim
b3e9520a0c python.pkgs.jaraco.classes: 1.4 -> 1.5 2018-09-03 01:25:01 +01:00
Jörg Thalheim
97b73d6a58 python.pkgs.jaraco.stream: 1.1.1 -> 1.2 2018-09-03 01:25:01 +01:00
Jörg Thalheim
8e15622cf3 python.pkgs.inflect: 0.2.5 -> 1.0.0 2018-09-03 01:25:01 +01:00
Ryan Mulligan
7b54a50e97
Merge pull request #45730 from Helkafen/snakemake 
snakemake: init at 5.2.2
 2018-09-02 07:54:13 -07:00
Tobias Happ
e6a3ad775f pythonPackages.dependency-injector: init at 3.13.1 (#45871) 2018-09-01 17:29:47 +02:00
Vladimír Čunát
355f19653c
pythonPackages.more-itertools: avoid doCheck on i686 
I expect noone will want to spend time really fixing these,
but it blocks wine from building...
 2018-09-01 15:08:53 +02:00
Frederik Rietdijk
4134048b6f Merge master into staging-next 2018-09-01 10:41:58 +02:00
Frederik Rietdijk
43f6ceabb8 pythonPackages.pandas: fix build 2018-09-01 10:41:37 +02:00
Robert Schütz
5a9270fe57 python.pkgs.h5py: disable tests 2018-09-01 10:41:37 +02:00
Robert Schütz
de151625f2 python.pkgs.natsort: no pyflakes and pep8 checks 2018-09-01 10:41:37 +02:00
Robert Schütz
6c9f7e2742 python.pkgs.cairocffi: remove superfluous patch 2018-09-01 10:41:37 +02:00
Robert Schütz
5a7e9c8237 python.pkgs.celery: fix tests 2018-09-01 10:41:37 +02:00
Robert Schütz
30970aa039 python.pkgs.keyrings-alt: fix tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0840e427e6 pythonPackages.bottleneck: get rid of warnings during tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
39ca3eb666 pythonPackages.cmd2: fix build 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
1c66e6d76d pythonPackages.moto: fix build 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
32492d9189 Python: fix botocore/boto3/awscli mess 
Revert "pythonPackages.boto3: 1.7.84 -> 1.8.4"

This reverts commit 06b37899300e0800e7a0ea632fcb5bf0f291e003.

Revert "python: botocore: 1.11.1 -> 1.11.4"

This reverts commit 3b0242d4c014a440b8c1c58cae812dc84496cc95.

Revert "python: botocore: 1.10.75 -> 1.11.1"

This reverts commit 996fd79967.

Revert "awscli: 1.16.1 -> 1.16.4"

This reverts commit 4880df9078bf024fd5a98afa8c6f28833e13f3d3.

Revert "awscli: 1.15.66 -> 1.16.1"

This reverts commit 6923bc8d23.

awscli: fix build

pythonPackages.botocore: 1.10.75 -> 1.10.84
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
f823ca5752 pythonPackages.scipy: disable tests 
We should try to get these enabled again asap.
https://github.com/scipy/scipy/pull/8871#issuecomment-417391433
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
ee5bff207f Revert "python.pkgs.python-jose: 2.0.2 -> 3.0.0" 
This breaks moto.

This reverts commit a6d3577d3d.
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7f50451d3c Revert "python: shippai: 0.2.3 -> 0.3.1" 
This broke vdirsyncer.

This reverts commit 0bca28c890.
 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
5918fc4601 pythonPackages.cement: disable Python 2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
57f1adc414 pythonPackages.boto3: 1.7.84 -> 1.8.4 2018-09-01 10:41:37 +02:00
Robert Schütz
a8d69de93f python.pkgs.sarge: disable tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
503f808870 pythonPackages.pytestrunner: failed attempt at enabling tests 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
37afcbf0f5 pythonPackages.folium: add missing numpy runtime dependency 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0666f784ee pythonPackages.boto3: 1.7.57 -> 1.7.84 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
a0d69a5642 python: XlsxWriter: 1.0.7 -> 1.0.9 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
997cb5c3cf python: typing: 3.6.4 -> 3.6.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7560a6f753 python: Sphinx: 1.7.7 -> 1.7.8 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
e8adeef855 python: sockjs-tornado: 1.0.3 -> 1.0.5 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
cdccb7b650 python: regex: 2018.08.17 -> 2018.08.29 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
36cd6f2bd5 python: pytest-timeout: 1.3.1 -> 1.3.2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
8a6b20cbad python: pytest: 3.7.2 -> 3.7.4 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
630fd86bc7 python: phonenumbers: 8.9.11 -> 8.9.12 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
e8ff5774aa python: persistent: 4.4.1 -> 4.4.2 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
88800b80f0 python: openpyxl: 2.5.5 -> 2.5.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
92855be2de python: moto: 1.3.4 -> 1.3.5 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0075504e55 python: jupyterlab: 0.34.2 -> 0.34.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
68b99fc377 python: joblib: 0.12.2 -> 0.12.3 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
d126f735f1 python: Faker: 0.8.17 -> 0.8.18 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
7677c18e19 python: dftfit: 0.4.11 -> 0.4.22 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
8d67b3f2ee python: deform: 2.0.5 -> 2.0.6 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
1708c82213 python: botocore: 1.11.1 -> 1.11.4 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
b92d2f6057 python: aws-adfs: 0.12.0 -> 0.12.1 2018-09-01 10:41:37 +02:00
Frederik Rietdijk
0abb01085d python: absl-py: 0.4.0 -> 0.4.1 2018-09-01 10:41:37 +02:00
Robert Schütz
dc707e41e4 python.pkgs.pyqrcode: init at 1.2.1 2018-08-31 19:07:35 +02:00
Robert Schütz
09cced6725 python.pkgs.pyotp: init at 2.2.6 2018-08-31 19:07:35 +02:00
Robert Schütz
93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
Robert Schütz
2b5659dc04 python.pkgs.ecpy: 0.9.0 -> 0.9.1 2018-08-31 15:56:52 +02:00
John Ericson
2c4a75e9ef
Merge pull request #45820 from obsidiansystems/dont-use-obsolete-platform-aliases 
treewide: Dont use obsolete platform aliases
 2018-08-31 09:56:10 -04:00
Silvan Mosberger
f7606a82ed
Merge pull request #43437 from MostAwesomeDude/cozy 
Cozy
 2018-08-31 15:29:41 +02:00
Sebastian Meric de Bellefon
c49e507bbc python.pkgs.ratelimiter: init at 1.2.0.post0 2018-08-31 08:57:28 -04:00