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4503 Commits

Author SHA1 Message Date
Frederik Rietdijk
d20a05e963 libpoly: use python3 2021-04-03 17:06:22 +02:00
Frederik Rietdijk
7865ac1046 lean2: stay with python2 
broken, so who knows...
 2021-04-03 17:06:21 +02:00
Frederik Rietdijk
7368564f99 gurobi: stay with python2 2021-04-03 17:06:08 +02:00
Frederik Rietdijk
ee258981bf ginac: use python3 2021-04-03 17:06:07 +02:00
Jack Gerrits
dfab218b9b vowpal-wabbit: 8.9.2 -> 8.10.0 2021-04-01 13:46:09 -04:00
Mario Rodas
d2275796d1 beluga: 2020-03-11 -> 1.0 2021-04-01 04:20:00 +00:00
Sandro
498cb76bdf
Merge pull request #117799 from LeSuisse/aliza-1.98.57 
aliza: 1.98.43 -> 1.98.57
 2021-03-30 17:18:15 +02:00
Sandro
9e24497453
Merge pull request #117970 from mpoquet/simgrid-3.26-to-3.27 
simgrid: 3.26 -> 3.27
 2021-03-30 14:28:37 +02:00
Ryan Mulligan
f3262c2a3e
Merge pull request #117648 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.0 -> 2.25.1
 2021-03-29 16:10:25 -07:00
Millian Poquet
99a5de6ebc simgrid: 3.26 -> 3.27 2021-03-29 21:20:27 +02:00
Justin Bedo
76bd953162 bedops: init 2.4.39 2021-03-28 22:27:51 -04:00
Maximilian Bosch
b8779b59d5
Merge pull request #117760 from r-ryantm/auto-update/calc 
calc: 2.12.9.0 -> 2.12.9.1
 2021-03-28 23:35:49 +02:00
Maximilian Bosch
4fc2ef2c5e
stellarium: 0.20.4 -> 0.21.0 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.0
 2021-03-28 22:46:57 +02:00
Ryan Mulligan
9a35bc87e8
Merge pull request #117607 from r-ryantm/auto-update/marvin 
marvin: 21.2.0 -> 21.3.0
 2021-03-27 20:35:56 -07:00
Thomas Gerbet
f801e2e92c aliza: 1.98.43 -> 1.98.57 2021-03-27 23:49:33 +01:00
R. RyanTM
190a6f04b6 calc: 2.12.9.0 -> 2.12.9.1 2021-03-27 07:21:16 +00:00
Sandro
53734a4355
Merge pull request #117730 from veprbl/pr/snakemake_6_0_5 
snakemake: 5.28.0 -> 6.0.5
 2021-03-27 02:44:44 +01:00
Dmitry Kalinkin
8887f4655e
snakemake: 5.28.0 -> 6.0.5 2021-03-26 18:32:26 -04:00
Gabriel Ebner
109d6b3bdb
Merge pull request #117712 from gebner/elan0110 
elan: 0.10.3 -> 0.11.0
 2021-03-26 19:58:29 +01:00
Dominic Steinitz
9eb60bee0e Fix https://github.com/NixOS/nixpkgs/issues/117715 2021-03-26 18:18:42 +00:00
Gabriel Ebner
0661cf4882 elan: 0.10.3 -> 0.11.0 
Also adapt the patchelf patch from rustup, since Lean 4 now dynamically
links to gmp.
 2021-03-26 19:16:33 +01:00
R. RyanTM
49e4c1e323 picard-tools: 2.25.0 -> 2.25.1 2021-03-26 03:16:44 +00:00
Mario Rodas
01f3ceeaa9
Merge pull request #116630 from r-ryantm/auto-update/lean 
lean: 3.27.0 -> 3.28.0
 2021-03-25 19:15:00 -05:00
Florian Klink
7d19272ef2
Merge pull request #115820 from flokli/xmedcon 
xmedcon: init at 0.21.0
 2021-03-25 23:01:58 +01:00
Dmitry Kalinkin
bf5c995ad2
Merge pull request #116487 from veprbl/pr/professor_init 
professor: init at 2.3.3
 2021-03-25 16:07:55 -04:00
R. RyanTM
3b3f141837 marvin: 21.2.0 -> 21.3.0 2021-03-25 17:58:45 +00:00
Frederik Rietdijk
5a5cb718a5 bedtools: use python3 2021-03-25 10:42:32 +01:00
Frederik Rietdijk
2c00aed6b1 bcftools: use python3 2021-03-25 10:39:47 +01:00
Timo Kaufmann
82e1bfa53d
Merge pull request #117123 from collares/cypari-update 
cypari2, cysignals: updates
 2021-03-24 21:38:04 +00:00
Sandro
489ca6979e
Merge pull request #117335 from bzizou/spades 
SPAdes: 3.15.1 -> 3.15.2 + fix license and platform
 2021-03-24 19:54:23 +01:00
Mauricio Collares
812ffed96b gap: backport aarch64 patch 2021-03-23 22:09:29 -03:00
Mauricio Collares
594eda3b7d sage: patch intermittently failing test 2021-03-23 22:09:29 -03:00
Mauricio Collares
15fd117e71 cypari2: 2.1.1 -> 2.1.2 
* cypari2: 2.1.1 -> 2.1.2, patch to fix segfault

* sage: update test expectations
 2021-03-23 22:09:29 -03:00
Ryan Mulligan
db21819e91
Merge pull request #117345 from r-ryantm/auto-update/jmol 
jmol: 14.31.34 -> 14.31.35
 2021-03-23 09:14:57 -07:00
R. RyanTM
8ab6893632 jmol: 14.31.34 -> 14.31.35 2021-03-23 11:29:06 +00:00
Bruno Bzeznik
f0eef16f9c SPAdes: 3.15.1 -> 3.15.2 + fix license and platform 2021-03-23 10:51:01 +01:00
Paul Liétar
6f8eb1e65a coq: enable coqide on darwin 
This was disabled a while ago, when itstool was broken on darwin.
Now that itstool works again, it can be re-enabled.
 2021-03-23 08:17:13 +01:00
mtreca
ff64acacba sumo: init at 1.8.0 2021-03-22 12:17:15 +01:00
Sandro
1c3d923aaa
Merge pull request #115685 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 20.06.6 -> 21.02.0
 2021-03-22 01:08:42 +01:00
Sandro
593cc0d5ee
Merge pull request #111224 from r-ryantm/auto-update/gwyddion 
gwyddion: 2.56 -> 2.57
 2021-03-21 05:22:26 +01:00
Florian Klink
275cc4e9c7 xmedcon: init at 0.21.0 
This allows reading DICOM images, including 3d stacks.
 2021-03-20 21:36:38 +01:00
Sandro
edac82660c
Merge pull request #117039 from raboof/gnucap-init-at-20210107 
gnucap: init at 20210107
 2021-03-20 19:49:27 +01:00
Arnout Engelen
52b7bd1e77
gnucap: init at 20210107 
Submitting on behalf of kvtb,
https://discourse.nixos.org/t/casual-nixpkgs-contributions/9607/13
 2021-03-20 16:36:48 +01:00
Mauricio Collares
c0b869f19f sage: re-add pkgconfig input, it's not duplicated 2021-03-20 06:43:23 -03:00
github-actions[bot]
c804f22a81
Merge master into staging-next 2021-03-19 12:26:52 +00:00
Doron Behar
23ef497c17
Merge pull request #111237 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.107 -> 3.3.108
 2021-03-19 10:24:36 +00:00
github-actions[bot]
6ffd2fe000
Merge master into staging-next 2021-03-19 06:17:55 +00:00
Jack Gerrits
a364fb6557 vowpal-wabbit: init at 8.9.2 2021-03-18 18:41:07 -07:00
Jan Tojnar
2445e9a681
Merge branch 'master' into staging-next 2021-03-18 19:24:39 +01:00
Thomas Mader
09acdfde94
sambamba: 0.7.1 -> 0.8.0 
Getting rid of dmd dependency and compile with ldc
 2021-03-18 17:41:30 +02:00
Jan Tojnar
0136206b12
Merge branch 'master' into staging-next 2021-03-18 13:35:59 +01:00
R. RyanTM
fadcc52955 lean: 3.27.0 -> 3.28.0 2021-03-17 14:16:02 +00:00
Sandro
fe4a249718
Merge pull request #116594 from NixOS/SuperSandro2000-patch-1 
sage: remove duplicated pkgconfig
 2021-03-17 11:10:10 +01:00
Sandro
2d01f4a96a
sage: remove duplicated pkgconfig 2021-03-17 09:24:07 +01:00
Samuel Gräfenstein
d90e7ac2e1
kicad: gnome3.dconf -> dconf 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:17 +01:00
Samuel Gräfenstein
b72ee5775c
treewide: gnome2.gtk -> gtk2 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:16 +01:00
Samuel Gräfenstein
672cd0c8e7
treewide: gnome3.gtkmm -> gtkmm3 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:15 +01:00
Samuel Gräfenstein
9517398973
treewide: gnome3.defaultIconTheme -> gnome3.adwaita-icon-theme 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:15 +01:00
Dmitry Kalinkin
7adf3f8127
professor: init at 2.3.3 2021-03-16 11:14:00 -04:00
github-actions[bot]
c7b23f6440
Merge master into staging-next 2021-03-14 18:17:08 +00:00
R. RyanTM
7c14c1a8d0 pcb: 4.2.2 -> 4.3.0 2021-03-14 13:34:35 -04:00
Martin Weinelt
0241873f7f
Merge branch 'master' into staging-next 2021-03-14 17:35:32 +01:00
mucaho
ddf1821112 tla-toolbox: 1.7.0 -> 1.7.1 
* updates package version
* fixes #114741
* fixes TLC model check call
 2021-03-14 12:27:35 -04:00
Ryan Mulligan
0e63a1bb33
Merge pull request #115579 from r-ryantm/auto-update/stacks 
stacks: 2.53 -> 2.55
 2021-03-14 07:47:22 -07:00
Ryan Mulligan
03754f91eb
Merge pull request #115574 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.14.1 -> 3.15.1
 2021-03-14 07:46:58 -07:00
github-actions[bot]
3b97019142
Merge master into staging-next 2021-03-14 06:17:28 +00:00
R. RyanTM
29bf7e2b89 jmol: 14.31.32 -> 14.31.34 2021-03-14 01:06:53 -05:00
R. RyanTM
621f19d89c calc: 2.12.8.2 -> 2.12.9.0 2021-03-13 23:43:28 -05:00
github-actions[bot]
d6257d451b
Merge master into staging-next 2021-03-11 18:23:54 +00:00
Guillaume Girol
a72148f3bc
Merge pull request #114881 from collares/sage-dependencies 
sage dependency updates
 2021-03-11 17:52:16 +00:00
github-actions[bot]
6a3a358b0d
Merge master into staging-next 2021-03-10 18:23:15 +00:00
Austin Seipp
b54b679c90
Merge pull request #115717 from r-ryantm/auto-update/verilator 
verilator: 4.108 -> 4.110
 2021-03-10 08:49:38 -06:00
github-actions[bot]
aea4725648
Merge master into staging-next 2021-03-10 12:21:24 +00:00
Sandro
bb0bb13f32
Merge pull request #115621 from jbedo/octopus 
octopus: 0.7.0 -> 0.7.1
 2021-03-10 10:03:42 +01:00
R. RyanTM
5a9a1b3545 verilator: 4.108 -> 4.110 2021-03-10 07:47:54 +00:00
R. RyanTM
6dc1177c24 wxmaxima: 20.06.6 -> 21.02.0 2021-03-10 03:37:07 +00:00
github-actions[bot]
149a81c88d
Merge master into staging-next 2021-03-10 00:39:07 +00:00
Mauricio Collares
f80271c7f0 sage: remove usage of deprecated numpy aliases 2021-03-09 21:28:46 -03:00
Mauricio Collares
3f02cdae14 sage: reenable pexpect interrupt test 2021-03-09 21:28:46 -03:00
Mauricio Collares
edc78bb31f sage: update test expectations for arb and giac, prepare for pari 2.13 2021-03-09 20:54:55 -03:00
Mauricio Collares
a0f55e48fa sage: use fetchSageDiff whenever possible 2021-03-09 20:54:55 -03:00
R. RyanTM
4142ae19e8 palp: 2.11 -> 2.20 2021-03-09 20:54:55 -03:00
Mauricio Collares
d508147edc giac: 1.5.0-87 -> 1.6.0-47 2021-03-09 20:54:55 -03:00
R. RyanTM
c0c700cb99 hal-hardware-analyzer: 3.2.5 -> 3.2.6 2021-03-09 15:29:51 -08:00
Justin Bedo
4e1a560ae4
octopus: 0.7.0 -> 0.7.1 2021-03-10 08:44:18 +11:00
R. RyanTM
cb9f13c609 stacks: 2.53 -> 2.55 2021-03-09 17:19:55 +00:00
R. RyanTM
95d96bbfe5 SPAdes: 3.14.1 -> 3.15.1 2021-03-09 17:01:01 +00:00
Martin Weinelt
16f9e4da3a
Merge branch 'master' into staging-next 2021-03-09 17:05:41 +01:00
R. RyanTM
97a6e6e702 qalculate-gtk: 3.16.0 -> 3.17.0 2021-03-09 09:26:04 +00:00
github-actions[bot]
dd7cbca2a6
Merge master into staging-next 2021-03-09 06:17:35 +00:00
Mario Rodas
7e99e0f339
Merge pull request #115404 from r-ryantm/auto-update/gmsh 
gmsh: 4.7.1 -> 4.8.0
 2021-03-08 19:45:08 -05:00
github-actions[bot]
3db2dee35f
Merge master into staging-next 2021-03-09 00:39:09 +00:00
R. RyanTM
da4b660561 jmol: 14.31.24 -> 14.31.32 2021-03-08 15:48:47 -05:00
github-actions[bot]
5c2a7abde7
Merge master into staging-next 2021-03-08 18:22:56 +00:00
Frederik Rietdijk
277d488026 Merge staging into staging-next 2021-03-08 19:20:18 +01:00
Ryan Mulligan
91056dcd70
Merge pull request #115122 from r-ryantm/auto-update/messer-slim 
messer-slim: 3.2.1 -> 3.6
 2021-03-08 07:16:00 -08:00
R. RyanTM
435eaafaf1 gmsh: 4.7.1 -> 4.8.0 2021-03-08 11:54:52 +00:00
Sandro Jäckel
0207c32eff
giac: remove ? null 2021-03-08 02:01:15 +01:00
Sandro Jäckel
b7befb3522
palp: format 2021-03-08 02:01:15 +01:00
github-actions[bot]
65cddb74d7
Merge staging-next into staging 2021-03-07 06:17:25 +00:00
Sandro
7e8cfa2c1b
Merge pull request #114747 from collares/eclib-update 2021-03-07 02:26:42 +01:00
github-actions[bot]
f9d4095295
Merge staging-next into staging 2021-03-07 00:41:13 +00:00
Ryan Mulligan
b20e5c31f6
Merge pull request #115010 from r-ryantm/auto-update/kstars 
kstars: 3.5.1 -> 3.5.2
 2021-03-06 16:39:59 -08:00
Mauricio Collares
ef615b5a61 sage: adapt for eclib output format changes 2021-03-06 12:28:52 -03:00
github-actions[bot]
ed3d50b6ce
Merge staging-next into staging 2021-03-05 06:17:28 +00:00
Sandro
2c0e6a0e69
Merge pull request #114586 from hjones2199/indi-full 2021-03-05 04:25:48 +01:00
Jan Tojnar
6d1958ad2d
Merge branch 'staging-next' into staging 2021-03-04 22:16:45 +01:00
R. RyanTM
12cde5ea85 messer-slim: 3.2.1 -> 3.6 2021-03-04 18:40:37 +00:00
Sandro
13a3551cec
Merge pull request #115041 from SuperSandro2000/r 
R: switch to pname + version
 2021-03-04 13:38:16 +01:00
Lio李歐
51512d843a
quantum-espresso: enable on darwin 2021-03-03 19:40:47 -08:00
Sandro Jäckel
086e9e0978
R: switch to pname + version 2021-03-04 03:47:33 +01:00
R. RyanTM
c340d7c85d kstars: 3.5.1 -> 3.5.2 2021-03-03 18:28:16 +00:00
sternenseemann
6f2fbf5f0b treewide: add missing lib inputs 
This fixes hopefully all remaining missing lib inputs, likely introduced
as a regression by our recent treewide switch from stdenv.lib to lib.
These instances are all I could find using nix-instantiate --parse using
the following command:

    find "$NIXPKGS" -name '*.nix' \
      -and ! -path "$NIXPKGS/pkgs/development/interpreters/python/cpython/docs/template.nix" \
      -and ! -path '$NIXPKGS/.git/**' \
      -print0 | xargs -0 nix-instantiate --parse >/dev/null
 2021-03-03 13:40:45 +01:00
github-actions[bot]
eef2c4e401
Merge staging-next into staging 2021-03-03 00:38:15 +00:00
Eduardo Sánchez Muñoz
b1718d879a
librepcb: fix use of wrapQtApp (#114891) 2021-03-03 01:03:37 +01:00
github-actions[bot]
e668a36492
Merge staging-next into staging 2021-03-02 12:17:32 +00:00
Vincent Laporte
cd43a53947 coq_8_13: 8.13.0 → 8.13.1 2021-03-02 09:04:40 +01:00
Jan Tojnar
913394a1d9
Merge branch 'staging-next' into staging 2021-03-01 19:30:56 +01:00
R. RyanTM
4dd9084ca9 lean: 3.26.0 -> 3.27.0 2021-02-28 15:14:35 +00:00
Hunter Jones
62249b7904 kstars: update license to gpl2Plus 2021-02-27 15:11:20 -06:00
Hunter Jones
18040bda9b phd2: use third party indi drivers 2021-02-27 13:26:17 -06:00
Hunter Jones
9c4e268d65 kstars: use third party indi drivers 2021-02-27 13:25:07 -06:00
github-actions[bot]
5267db2989
Merge staging-next into staging 2021-02-27 18:16:44 +00:00
Sandro
299a683718
Merge pull request #114417 from veprbl/pr/sherpa_darwin_fix 
sherpa: fix on darwin
 2021-02-27 14:23:38 +01:00
github-actions[bot]
2a38839b78
Merge staging-next into staging 2021-02-27 12:20:00 +00:00
Sandro
7918f4b407
Merge pull request #114539 from SuperSandro2000/z3-java 
z3: Add output for Java bindings (*.jar and *.so)
 2021-02-27 11:15:31 +01:00
Lorenz Leutgeb
7306864977
z3: Add output for Java bindings (*.jar and *.so) 2021-02-27 09:01:25 +01:00
github-actions[bot]
52f404b187
Merge staging-next into staging 2021-02-27 06:17:01 +00:00
R. RyanTM
4d89f50881 jmol: 14.31.18 -> 14.31.24 2021-02-26 21:10:01 -05:00
github-actions[bot]
e8162c62e3
Merge staging-next into staging 2021-02-27 00:37:54 +00:00
Vijay Lulla
2c9d7ee369 R: 4.0.3 -> 4.0.4 2021-02-26 22:42:21 +00:00
Guillaume Girol
b4389c0736
Merge pull request #114271 from hjones2199/siril 
siril: 0.99.6 -> 0.99.8.1
 2021-02-26 20:25:19 +00:00
github-actions[bot]
ec3729e487
Merge staging-next into staging 2021-02-26 18:16:46 +00:00
Timo Kaufmann
be504fc82a
Merge pull request #113603 from collares/sage-test-fixes 
sage: disable intermittent test and fix threejs breakage
 2021-02-26 13:27:44 +00:00
Robert Schütz
54757b35c1 Merge branch 'staging-next' into staging 2021-02-26 10:56:17 +01:00
Frederik Rietdijk
c456a2512f Merge master into staging-next 2021-02-26 10:25:13 +01:00
Mauricio Collares
4718aea896 sage: use slightly more robust way of getting threejs version 2021-02-25 22:31:27 -03:00
Mauricio Collares
7efa803a4b sage: disable intermittent test 2021-02-25 22:31:27 -03:00
Dmitry Kalinkin
5b9a3edb20 sherpa: fix on darwin 
Fixes: 81cf1908 ('sherpa: fix build w/glibc-2.32')
 2021-02-25 17:24:13 -05:00
Hunter Jones
804999f37e siril: 0.99.6 -> 0.99.8.1 2021-02-25 10:46:05 -06:00
Eduardo Sánchez Muñoz
ade1748bd8
diylc: 4.15.1 -> 4.17.0 (#114260) 
* diylc: set eduardosm as maintainer

* diylc: 4.15.1 -> 4.17.0

* diylc: run preInstall and postInstall hooks
 2021-02-25 09:14:51 +01:00
Mario Rodas
9a6f587ab8
Merge pull request #114100 from r-ryantm/auto-update/star 
star: 2.7.7a -> 2.7.8a
 2021-02-24 22:36:58 -05:00
Vincent Laporte
a346c68411 acgtk: 1.5.1 → 1.5.2 2021-02-24 08:13:06 +01:00
Vladimir Serov
f4eddc2fad hol: 10 -> 14 
also cleared broken status; builds on NixOS

Signed-off-by: Vladimir Serov <me@cab404.ru>
 2021-02-23 21:31:26 -05:00
Mario Rodas
19d38d712a
Merge pull request #112945 from r-ryantm/auto-update/ngspice 
ngspice: 33 -> 34
 2021-02-23 20:40:05 -05:00
Vincent Laporte
f9a4e6b1e2 alt-ergo: use Dune 2 2021-02-23 22:11:44 +01:00
R. RyanTM
615ff1b2ab star: 2.7.7a -> 2.7.8a 2021-02-23 10:38:00 +00:00
Sandro
ad06c82b9c
Merge pull request #113965 from SuperSandro2000/fix-collection17 2021-02-23 08:44:14 +01:00
Fabian Affolter
a3343fc6b9 calc: specify license 2021-02-22 14:21:33 -05:00
github-actions[bot]
ed07c63105
Merge staging-next into staging 2021-02-22 06:17:08 +00:00