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1016 Commits

Author SHA1 Message Date
Alex Branham
1e354a7e40 R: 3.5.2 -> 3.5.3 
Closes https://github.com/NixOS/nixpkgs/pull/57400.
 2019-03-14 19:50:37 +01:00
Timo Kaufmann
ce96994032
sage: fix docbuild (#57294) 
The docbuild (or rather its tests) failed because sphinx built some
English parts of the documentation in Russian. The added debian patch
fixes that by isolating docbuilding threads in sphinx using
proper subprocesses.
 2019-03-10 21:42:54 +00:00
Timo Kaufmann
3b7fb15182
Merge pull request #57126 from timokau/sage-maxima-downgrade 
sage: downgrade maxima to 5.41
 2019-03-09 20:05:01 +00:00
Timo Kaufmann
23908a0ee3 sage: downgrade maxima to 5.41 
See discussion at
82254747af.
 2019-03-09 17:23:57 +01:00
luz.paz
77cb537712 gmsh: 4.1.5 -> 4.2.1 2019-03-08 05:24:15 -05:00
Timo Kaufmann
e2b287b32a maxima: remove ecl known-failures patch 
It doesn't apply anymore since the recent update. Since the testsuite is
completely disabled now, there is little point in rebasing it.
 2019-03-07 16:08:10 +01:00
Jörg Thalheim
9b57d852af
Merge pull request #56905 from timokau/pari-fix 
pari: fix off-by-one error
 2019-03-06 11:00:07 +00:00
Timo Kaufmann
a648b8c714 pari: fix off-by-one error 
Done by applying upstream patch. Will be included in the next release.

Upstream: https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=2117
 2019-03-05 21:50:44 +01:00
Timo Kaufmann
00fa98f012 pari: add timokau as maintainer 
I'm mostly interested in this package because it is a dependency of
sage. I'd like to be notified on changes (which ofBorg will do when I'm
listed as a maintainer).
 2019-03-05 20:23:04 +01:00
Timo Kaufmann
5a23cb575e pari: slight refactoring 
Use pname, one line per argument.
 2019-03-05 20:21:26 +01:00
Peter Simons
1c6a193b3e wxmaxima: update to version 19.03.0 2019-03-05 12:53:05 +01:00
Peter Simons
82254747af maxima: update to version 5.42.2 2019-03-05 12:53:04 +01:00
R. RyanTM
6a987f5730 form: 4.2.0 -> 4.2.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/form/versions
 2019-03-03 20:49:36 +01:00
Timo Kaufmann
9e3754786b sage: fix strictDeps fallout 
See https://github.com/NixOS/nixpkgs/pull/54182 and
https://github.com/NixOS/nixpkgs/pull/55757.
 2019-03-03 13:25:40 +01:00
Timo Kaufmann
2de81ee78f sage: patch for pip 19 
pip 19 introduced a deprecation warning for python 2.7. Since sage
internally uses pip to query for installed packages, this deprecation
warning will show up at unexpected times. That is ugly and messes with
the testsuite.

Upstream: https://trac.sagemath.org/ticket/27405
 2019-03-03 13:21:22 +01:00
R. RyanTM
e869b87dbb clp: 1.16.11 -> 1.17.0 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clp/versions
 2019-03-01 16:08:32 -08:00
Frederik Rietdijk
2fcb11a244 Merge staging-next into master 2019-03-01 09:06:20 +01:00
Jörg Thalheim
dadc7eb329
treewide: use runtimeShell instead of stdenv.shell whenever possible 
Whenever we create scripts that are installed to $out, we must use runtimeShell
in order to get the shell that can be executed on the machine we create the
package for. This is relevant for cross-compiling. The only use case for
stdenv.shell are scripts that are executed as part of the build system.
Usages in checkPhase are borderline however to decrease the likelyhood
of people copying the wrong examples, I decided to use runtimeShell as well.
 2019-02-26 14:10:49 +00:00
Vladimír Čunát
71f4ba29a3
Merge branch 'master' into staging-next 
Hydra nixpkgs: ?compare=1506218
 2019-02-22 17:51:01 +01:00
luz.paz
add7b20858 gmsh: 4.1.3 -> 4.1.5 2019-02-21 22:55:48 -05:00
Frederik Rietdijk
e2cd07b997 Merge staging-next into staging 2019-02-21 07:54:33 +01:00
Vladimír Čunát
32767d139f
Merge branch 'staging-next' 
This round is without the systemd CVE,
as we don't have binaries for that yet.
BTW, I just ignore darwin binaries these days,
as I'd have to wait for weeks for them.
 2019-02-20 09:38:45 +01:00
Michael Raskin
446520bb9b
Merge pull request #56026 from oxij/tree/move-defaults-to-package-files-half-cuda 
all-packages.nix: move defaults to package files continues^2
 2019-02-19 21:54:02 +00:00
Matthew Bauer
b1bbd94bb6 Merge remote-tracking branch 'NixOS/master' into staging 2019-02-18 20:36:48 -05:00
Frederik Rietdijk
815b77cbe6 Merge master into staging-next 2019-02-18 14:18:04 +01:00
Frederik Rietdijk
4b2336ea28 python.pkgs.caffe: fix build, closes #8749 2019-02-17 10:13:22 +01:00
Vladimír Čunát
f7f1a2f54e
Merge branch 'master' into staging-next 
A mass darwin rebuild from master (#55784).
 2019-02-17 08:05:24 +01:00
Gabriel Ebner
7cbc76a3e6 Merge branch 'auto-update/qalculate-gtk' 2019-02-16 17:25:47 +01:00
Frederik Rietdijk
fd48a94b62 Merge staging-next into staging 2019-02-16 09:30:46 +01:00
Frederik Rietdijk
6fe10d2779 Merge master into staging-next 2019-02-16 09:29:54 +01:00
R. RyanTM
ef405c5b67 qalculate-gtk: 2.8.2 -> 2.9.0 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/qalculate-gtk/versions
 2019-02-15 11:39:04 -08:00
Timo Kaufmann
9243e85fbc
sage: fix fetchSageDiff (#55783) 
For some reason I changed it to use `cgit`s `rawdiff` instead of `patch`
in the update to sage 8.6. Probably commited that by accident, at least
I can't remember the reason. Also changed the excludes filter, the
leading slash prevented it from working.

As a result, the cypari2 patch changed. Only didn't notice because it
was cached.

Fixes #55780
 2019-02-14 21:48:03 +01:00
Frederik Rietdijk
a25d48cd4f Merge master into staging 2019-02-14 11:35:50 +01:00
Jan Tojnar
606ceda352
gnome3: stop using aliases 2019-02-14 02:31:15 +01:00
Michael Raskin
8384cfe455
Merge pull request #55129 from oxij/tree/move-defaults-to-package-files 
all-packages.nix: move defaults to package files
 2019-02-13 20:04:08 +00:00
Frederik Rietdijk
7257dedd7c Merge master into staging-next 2019-02-13 12:33:29 +01:00
Timo Kaufmann
5728028916 sage: add numpy 1.16 compatibility patch 
https://trac.sagemath.org/ticket/27000
 2019-02-11 21:43:56 +01:00
Timo Kaufmann
342333c0ab
sage: add compatibility for sphinx 1.8.3 (#55078) (#55560) 
Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by
https://github.com/NixOS/nixpkgs/pull/54186, this needs to be done
separately.

(cherry picked from commit 33db01e6d9)
 2019-02-11 13:18:16 +01:00
Florian Franzen
f470720aa8 Merge branch 'staging-next' into staging 2019-02-10 14:37:31 +01:00
Vladimír Čunát
d2c4b5777b
sagelib: fix missing pkgs.pkgconfig 
Again: eb3f0aef43 #54306
Apparently the derivation needs both pkgconfigs
(it fails when missing either).
 2019-02-09 10:36:47 +01:00
Jan Malakhovski
4bc66b1994 cntk: move defaults to package file 2019-02-03 15:32:16 +00:00
Jan Malakhovski
31aa884b7f caffe: move defaults to package file 2019-02-03 15:32:15 +00:00
Jan Malakhovski
49148a3ea2 mxnet: move defaults to package file 2019-02-03 15:32:14 +00:00
Jan Malakhovski
88ca6dd78a cplex: move defaults to package file 2019-02-03 15:30:47 +00:00
Jan Malakhovski
ec2452dac1 scilab: move defaults to package file 2019-02-03 15:30:45 +00:00
Timo Kaufmann
33db01e6d9
sage: add compatibility for sphinx 1.8.3 (#55078) 
Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by
https://github.com/NixOS/nixpkgs/pull/54186, this needs to be done
separately.
 2019-02-02 13:02:07 +01:00
Vladimír Čunát
8ba516664b
Merge branch 'staging-next' into staging 2019-02-01 09:42:53 +01:00
Robert Schütz
052acfe930 sage: python-openid: move django and twill to checkInputs (#54949) 
A search through the source code
(https://github.com/openid/python-openid/search?q=django and
https://github.com/openid/python-openid/search?q=twill) reveals
that they are only used in examples and tests.
 2019-01-31 10:14:36 +01:00
markuskowa
ca13dc163b
Merge pull request #49871 from wucke13/getdp 
getdp: init at 3.0.4
 2019-01-31 00:43:08 +01:00
R. RyanTM
2b03ef0521 gmsh: 4.1.0 -> 4.1.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2019-01-28 10:33:36 -08:00
wucke13
4f40b5e00e getdp: init at 3.0.4 2019-01-28 16:45:13 +01:00
Matthew Bauer
92f0f8dd68 Merge remote-tracking branch 'NixOS/master' into staging 2019-01-27 00:01:13 -05:00
Artemis Tosini
51a2a08d6e
mathematica: 11.2.0 -> 11.3.0 
Note that this only affects the English version, as I do not have access
to the hash for the Japanese version.
 2019-01-25 15:29:02 +00:00
worldofpeace
78da8d668b pantheon: init a 5.0 2019-01-24 20:54:14 +00:00
Timo Kaufmann
d34f44db45
sage: fix transient ecl error (#54285) 
Sometimes the doctests fail because ecl races to create a directory.
This should fix that by making sure each process has its own directory.
 2019-01-18 23:02:03 +01:00
markuskowa
4545aaa671
Merge pull request #54209 from r-ryantm/auto-update/gmsh 
gmsh: 4.0.7 -> 4.1.0
 2019-01-18 11:40:48 +01:00
R. RyanTM
55ea7b1bbe gmsh: 4.0.7 -> 4.1.0 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2019-01-17 12:55:54 -08:00
Timo Kaufmann
e379ee67c3 sage: 8.5 -> 8.6 2019-01-17 20:39:02 +01:00
Timo Kaufmann
29e150d85f
Merge pull request #54127 from timokau/gap-improvements 
gap: install libgap, add packageSet option
 2019-01-17 20:38:38 +01:00
Timo Kaufmann
cf63a8c94c gap: add packageSet option 
Two reasons for this:

- more fine-grained space/functionality tradeoff

- preparation for the sage 8.6 update, which finally doesn't need a
  downgraded gap anymore but does break when unexpected (non-standard)
  packages are installed. Details: https://trac.sagemath.org/ticket/26983

The proper way to deal with gap packages would be to create a package
set, package each one individually and have something like gap
equivalent of `python.withPackages`. I am not willing to do that
however.
 2019-01-17 10:10:24 +01:00
Timo Kaufmann
bb173ec8e3 gap: install libgap 
There are some starts of a `make install`, but nothing complete yet.
Upstream now ships a `libgap` as a replacement of the custom one used by
sagemath.
 2019-01-17 10:10:21 +01:00
Timo Kaufmann
6bbd0596dd gap: add timokau as maintainer 
So that I'll be notified on changes which likely impact sage.
 2019-01-16 23:41:31 +01:00
Timo Kaufmann
a8dbc5e313
python.pkgs.cypari2: 1.3.1 -> 2.0.3 (#54093) 
Upstream issues should be fixed now, see https://trac.sagemath.org/ticket/26442.
Sage needs a patch to adapt.
 2019-01-16 22:15:40 +01:00
Johannes Frankenau
bebf305c1b gurobi: 8.0.1 -> 8.1 (#53884) 2019-01-13 23:22:55 +01:00
R. RyanTM
bd7eec5d9c pynac: 0.7.22 -> 0.7.23 (#53559) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pynac/versions
 2019-01-07 14:52:18 +01:00
Timo Kaufmann
7abdacc4f2
Merge pull request #51039 from timokau/sage-8.5 
sage: 8.4 -> 8.5
 2018-12-29 16:15:38 +01:00
Timo Kaufmann
8cd7b5aab3
gap: 4r8p10 -> 4.10.0 (#53037) 
This new version also has a libgap replacement, so after the next sage
update gap-libgap-compatible and libgap won't be necessary anymore.
 2018-12-29 16:05:56 +01:00
Timo Kaufmann
22c16ed300 Merge remote-tracking branch 'upstream/master' into sage-8.5 2018-12-29 12:16:02 +01:00
Timo Kaufmann
95909d4fb6 Revert "sage: preload openblasCompat" 
This reverts commit 4900bbee17.

The issue that was supposed to fix is now fixed by lazy-loading rpy2 and
makign sure scipy is loaded before that.
That is not quite as nice, but preloading is now causing its own issues
with openblas 0.3.4:
https://github.com/xianyi/OpenBLAS/issues/1936
 2018-12-28 23:06:05 +01:00
Timo Kaufmann
360eddd3a3 sage: remove outdated patch files 2018-12-28 23:06:05 +01:00
Timo Kaufmann
6f0f06ec89 sage: 8.5.rc1 -> 8.5 2018-12-28 23:06:05 +01:00
Alex Branham
a5fc513079 R: 3.5.1 -> 3.5.2 
Closes https://github.com/NixOS/nixpkgs/pull/52571.
 2018-12-21 13:59:36 +01:00
Gabriel Ebner
21597583f9
Merge pull request #52067 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 2.8.1 -> 2.8.2
 2018-12-17 09:46:32 +01:00
Timo Kaufmann
b09967d812 sage: 8.5.rc0 -> 8.5.rc1 2018-12-16 21:33:28 +01:00
Jörg Thalheim
33c227c23b
Merge pull request #52392 from r-ryantm/auto-update/calc 
calc: 2.12.7.1 -> 2.12.7.2
 2018-12-16 17:33:43 +00:00
R. RyanTM
67536060ac calc: 2.12.7.1 -> 2.12.7.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-12-16 07:44:09 -08:00
Michael Raskin
2f0cbb34cf
Merge pull request #52171 from r-ryantm/auto-update/pari 
pari: 2.11.0 -> 2.11.1
 2018-12-15 12:08:50 +00:00
R. RyanTM
943e6fa283 pari: 2.11.0 -> 2.11.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pari/versions
 2018-12-14 22:17:15 -08:00
R. RyanTM
a7e1717d4b qalculate-gtk: 2.8.1 -> 2.8.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/qalculate-gtk/versions
 2018-12-14 07:37:22 -08:00
luz.paz
ab9532b1fe gmsh: 4.0.5 -> 4.0.7 2018-12-14 08:01:20 -05:00
Timo Kaufmann
90bc5ce04d sage: 8.5.beta5 -> 8.5.beta6 2018-12-10 19:36:24 +01:00
Timo Kaufmann
f0ea741a9a
Merge pull request #51786 from symphorien/giac-1.5 
giac: 1.4.9 -> 1.5.0
 2018-12-10 13:40:03 +01:00
Symphorien Gibol
29242e472e giac: build with nauty support 2018-12-09 23:18:58 +01:00
Symphorien Gibol
2253b3e760 nauty: also install libs 2018-12-09 23:18:53 +01:00
Symphorien Gibol
8b4f885264 giac: add missing optional dependencies 2018-12-09 23:18:53 +01:00
Symphorien Gibol
e7801461e0 giac: don't split in multiple outputs for when gui enabled 
This breaks the Phys and Turtle menu, among other things.
 2018-12-09 23:18:53 +01:00
Symphorien Gibol
b5435d0551 giac: 1.4.9 -> 1.5.0 2018-12-09 23:18:46 +01:00
Frederik Rietdijk
a510aa2672 Merge master into staging-next 2018-12-03 12:18:43 +01:00
Timo Kaufmann
5f2b8de75c
Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446)" (#51414) 
This reverts commit d9b650f4cc.

The update is causing segfaults. See
https://trac.sagemath.org/ticket/26442.
 2018-12-03 00:44:33 +01:00
markuskowa
506d4c7e44
Merge pull request #51329 from c0bw3b/cleanup/gnu-https 
Favor HTTPS URLs - the GNU edition
 2018-12-02 16:52:33 +01:00
c0bw3b
0498ccd076 Treewide: use HTTPS on GNU domains 
HTTP -> HTTPS for :
- http://gnu.org/
- http://www.gnu.org/
- http://elpa.gnu.org/
- http://lists.gnu.org/
- http://gcc.gnu.org/
- http://ftp.gnu.org/ (except in fetchurl mirrors)
- http://bugs.gnu.org/
 2018-12-02 15:51:59 +01:00
c0bw3b
0f868d8116 Treewide: use HTTPS on SourceForge 2018-12-02 15:33:08 +01:00
Jan Tojnar
a51a99c690
gobject-introspection: rename package 
camelCase package name was a huge inconsistency in GNOME package set.
 2018-12-02 12:42:29 +01:00
Brenton Horne
10f40f3ac6 scilab-bin: adding application launchers 
Moving the desktop configuration files from
opt/scilab-$ver/share/applications to share/applications, making the
required changes, and moving the icons in opt/scilab-$ver/share/icons to
share/icons. Moving locales, appdata and mime out of there
opt/scilab-${ver} too. Also removing unneeded scilab-${ver} and
scilab-${majorVer} symlinks from bin/.
 2018-12-02 17:53:40 +10:00
Brenton Horne
7041972128 scilab-bin: adding bin/scilab symlink (#51346) 
Should fix #51343, merely adding a scilab symlink within the bin/ directory, so that it can be detected by SageMath.
 2018-12-01 23:25:40 +01:00
Timo Kaufmann
88b69a0d40
Merge pull request #51337 from timokau/sagenb-matplotlib-fix 
sage: misc fixes
 2018-12-01 22:04:48 +01:00
Timo Kaufmann
0e570199de sage: fix jmol integration 2018-12-01 21:31:29 +01:00
Timo Kaufmann
cb73495f02 sagenb: fix matplotlib path 2018-12-01 20:41:40 +01:00
Timo Kaufmann
d9b650f4cc
pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446) 2018-12-01 12:57:55 +01:00
Matthew Bauer
76c7a8bac0
Merge pull request #51205 from matthewbauer/more-setup-hooks 
Add premake & imake setup hook
 2018-11-29 19:36:25 -06:00
Matthew Bauer
c0a804c747 treewide: add dontUseImakeConfigure where needed 
We need to set dontUseImakeConfigure in a few places to prevent imake
from overriding the default configure phase. This packages all have a
configure script that needs to get run:

- Xaw3d
- R
- tkgate
- ssvnc
 2018-11-28 20:14:45 -06:00
Timo Kaufmann
d6376bca6d sage: don't test the downgraded R 
Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249. The
failures look harmless and are fixed with R 3.5 which will be used in
sage 8.5.
 2018-11-28 22:52:15 +01:00
Timo Kaufmann
359bf7f1e3 sage: disable test timeout 
Hydra build failed due to timeout:
https://hydra.nixos.org/build/84870983
 2018-11-28 22:37:24 +01:00
Timo Kaufmann
4900bbee17 sage: preload openblasCompat 2018-11-28 20:44:09 +01:00
Timo Kaufmann
7ca2915a50 sage: 8.5.beta4 -> 8.5.beta5 2018-11-27 18:26:16 +01:00
Timo Kaufmann
2dd9a0ed72 Merge remote-tracking branch 'upstream/master' into sage-8.5 2018-11-27 18:25:39 +01:00
Timo Kaufmann
90cebaf828 sage: 8.5.beta3 -> 8.5.beta4 2018-11-25 19:39:18 +01:00
Timo Kaufmann
2a87caa892 sage: 8.5.beta2 -> 8.5.beta3 2018-11-25 19:39:17 +01:00
Timo Kaufmann
3370247f7f sage: 8.5.beta1 -> 8.5.beta2 2018-11-25 19:39:17 +01:00
Timo Kaufmann
883aa99226 sage: add short tests 2018-11-25 19:39:13 +01:00
Timo Kaufmann
8e7da1b8a4 sage: 8.5.beta0 -> 8.5.beta1 2018-11-25 19:36:21 +01:00
Timo Kaufmann
6138f5d5eb sage: 8.4 -> 8.5.beta0 2018-11-25 19:36:21 +01:00
Timo Kaufmann
2fbde72556
sage: add tkinter as matplotlib backend (#51032) 
Fixes #50959.
 2018-11-25 17:38:45 +01:00
Timo Kaufmann
98c94d3d7d sage: add jupyter notebook support 
Fixes #48544.
 2018-11-25 15:54:31 +01:00
Timo Kaufmann
0c23fa9aaf
Merge pull request #50998 from timokau/sage-refactor 
Sage refactor
 2018-11-24 23:59:28 +01:00
Timo Kaufmann
a0723f1285 sage: don't fix node version 2018-11-24 23:14:38 +01:00
Timo Kaufmann
e28a8ed287 sage: add some flexibility to the test runner 
Make it possible to run individual tests. This is very useful while
git-bisecting.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann
21f9123ea6 sage: remove openblas hack 
The pc files have since been included into the openblas package.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann
3832ddedb9 sage: refactor 2018-11-24 23:14:33 +01:00
c0bw3b
0ea604ac1d Treewide: use https for SourceForge 2018-11-24 19:58:03 +01:00
Timo Kaufmann
9b4a518465 sage: drop known-padics-failure patch 
The failure was not observed for a while and is probably fixed now.
 2018-11-24 19:01:57 +01:00
Timo Kaufmann
ca6475b5e8 sage: drop unused patches 2018-11-24 19:01:57 +01:00
Michael Raskin
6fe39605df polymake: init at 3.2r4 2018-11-22 12:29:14 +03:00
Frederik Rietdijk
fd26e7be2a Merge master into staging-next 2018-11-20 11:47:26 +01:00
luzpaz
0ec2af3736
gmsh: 4.0.4 -> 4.0.5 
Manually updated
 2018-11-19 11:12:38 -05:00
Frederik Rietdijk
63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
Jörg Thalheim
131f2e93b6
sage: unpin nodePackage version 2018-11-16 21:24:25 +00:00
Renaud
650036f022
Merge pull request #50359 from jfrankenau/gurobi-java 
gurobi: install Java library files
 2018-11-15 14:13:47 +01:00
Johannes Frankenau
b4e13e6257 gurobi: install Java library files 2018-11-14 19:38:18 +01:00
Renaud
7ca9d67948
Merge pull request #50102 from r-ryantm/auto-update/gp2c 
gp2c: 0.0.11 -> 0.0.11pl1
 2018-11-14 16:07:49 +01:00
markuskowa
f597a88542
Merge pull request #50101 from r-ryantm/auto-update/gmsh 
gmsh: 4.0.2 -> 4.0.4
 2018-11-14 12:46:48 +01:00
Markus Kowalewski
644ab709e7
gmsh: restrict platform to x86_64-linux 2018-11-14 12:33:37 +01:00
Markus Kowalewski
ced40eabfd
gmsh: use openblas instead of atlas/lapack 
* openblas is properly recognized by cmake
* the cmake patch is no longer neccessary
 2018-11-14 11:41:46 +01:00
Matthew Bauer
2e18ba6c5a
Merge pull request #49776 from matthewbauer/atlas-remove 
atlas: remove
 2018-11-13 19:18:35 -06:00
Frederik Rietdijk
daf3297cb4 Merge master into staging-next 2018-11-12 18:59:08 +01:00
Peter Simons
22a802584f
Merge pull request #50179 from Thra11/r-without-jdk 
R: Remove jdk dependency on aarch32/64
 2018-11-12 12:42:39 +01:00
Frederik Rietdijk
7863aae5b2 Merge master into staging-next 2018-11-11 08:59:44 +01:00
markuskowa
45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00
Markus Kowalewski
6533d7588d
colpack: set platform to linux 2018-11-11 02:17:49 +01:00
Tom Hall
b51018ed2e R: Remove jdk dependency on aarch32/64 
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
 2018-11-10 20:53:26 +00:00
R. RyanTM
2fd0c31673 calc: 2.12.6.8 -> 2.12.7.1 (#50173) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-11-10 15:32:06 +01:00
Gabriel Ebner
698ad2dd4d nasc: 0.5.0 -> 0.5.1 2018-11-10 14:18:31 +01:00
Gabriel Ebner
5f2a7607fa qalculate-gtk: 2.6.2 -> 2.8.1 2018-11-10 13:17:17 +01:00
Frederik Rietdijk
53d00c3351 Merge master into staging-next 2018-11-10 11:08:54 +01:00
R. RyanTM
f5b4eb63f3 gp2c: 0.0.11 -> 0.0.11pl1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gp2c/versions
 2018-11-09 17:56:17 -08:00
R. RyanTM
6f2bb3c275 gmsh: 4.0.2 -> 4.0.4 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2018-11-09 17:41:49 -08:00
Timo Kaufmann
efe6322ce4 pythonPackages.networkx: 2.1 -> 2.2 2018-11-07 20:15:37 +01:00
Timo Kaufmann
72e6e792f6 sage: add fetchSageDiff utility function 2018-11-07 20:15:37 +01:00
Matthew Bauer
95373d3634 atlas: remove 
atlas is broken and can apparently be removed.

Fixes #49594
 2018-11-04 20:23:12 -06:00
Matthew Bauer
7f4b26681d
Merge pull request #49417 from matthewbauer/disallow-native-build-inputs 
Disallow references to nativeBuildInputs
 2018-11-02 20:26:48 -05:00
Jan Tojnar
3493f44727
Merge pull request #49560 from worldofpeace/eos-third-update 
update some elementary thirdparty apps
 2018-11-02 21:29:57 +01:00
worldofpeace
0a2420bccd nasc: 0.4.7 -> 0.5.0 2018-11-02 16:01:05 -04:00
Tuomas Tynkkynen
067d1cf330 Merge remote-tracking branch 'upstream/master' into staging 
Conflicts:
	pkgs/applications/science/math/sage/sage-src.nix
 2018-10-27 19:58:03 +03:00
Timo Kaufmann
2513747356 sage: fix attrname 
This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
 2018-10-27 14:18:08 +02:00
Timo Kaufmann
fbea2cd77a arb: 2.14.0 -> 2.15.1 2018-10-27 11:27:03 +02:00
Timo Kaufmann
2ce2fcfc30 pythonPackages.cython: 0.28.5 -> 0.29 
Needs a sage patch from
https://trac.sagemath.org/ticket/25292
 2018-10-24 20:05:44 +02:00
Timo Kaufmann
db75fe7313 sage: fix doctest 
The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
 2018-10-22 14:52:19 +02:00
Timo Kaufmann
b39142cd1f sage: fix dochtml tests 2018-10-21 19:17:07 +02:00
Timo Kaufmann
38c2be5ffe sage: fix docbuild 
This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
 2018-10-21 14:16:06 +02:00
Timo Kaufmann
a413dedde1
Merge pull request #44527 from timokau/sage-8.4 
[WIP] sage: 8.3 -> 8.4
 2018-10-20 01:34:34 +02:00
Timo Kaufmann
7ca1c31dfa sage: 8.4.rc1 -> 8.4 2018-10-18 09:58:36 +02:00
R. RyanTM
eeb2ee296c gmsh: 4.0.1 -> 4.0.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2018-10-15 21:54:45 -07:00
Timo Kaufmann
f89df0b556 sage: 8.4.rc0 -> 8.4.rc1 2018-10-13 13:27:10 +02:00
Timo Kaufmann
27919e06f1 sage: 8.4.beta7 -> 8.4.rc0 2018-10-07 12:23:10 +02:00
Jörg Thalheim
5200167f12
Merge pull request #47831 from r-ryantm/auto-update/calc 
calc: 2.12.6.6 -> 2.12.6.8
 2018-10-04 23:31:38 +01:00
R. RyanTM
904fd99bb4 calc: 2.12.6.6 -> 2.12.6.8 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-10-03 16:01:08 -07:00
R. RyanTM
98092f7a67 nauty: 26r10 -> 26r11 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nauty/versions
 2018-10-03 05:54:07 -07:00
Timo Kaufmann
a13eb29485 sage: 8.4.beta6 -> 8.4.beta7 2018-10-01 17:38:20 +02:00
Timo Kaufmann
bcc066b569 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-10-01 14:20:33 +02:00
R. RyanTM
b65fbe8fcd gmsh: 4.0.0 -> 4.0.1 (#47060) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2018-09-28 22:17:32 +02:00
Timo Kaufmann
0be6ca9e71 sage: 8.4.beta5 -> 8.4.beta6 2018-09-27 12:08:15 +02:00
Timo Kaufmann
1217882907 sage: 8.4.beta4 -> 8.4.beta5 2018-09-15 17:23:14 +02:00
Timo Kaufmann
c3f652d5a8 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-09-15 17:22:11 +02:00
Silvan Mosberger
10a412f251
almonds: update license 2018-09-09 02:04:34 +02:00
Markus Kowalewski
1cff2dd135
pynac: add license 2018-09-08 14:48:19 +02:00
Timo Kaufmann
db784d883c sage: re-add pkg-config aliases 
Those were removed because they were added to openblas itself. There was
an error with that however and it will take some time until the fix
makes its way through staging. For the time being, reverting this part
of 26d5d030fe will fix the sage build.
This commit should be reverted once
408eacbc89 is in master.
 2018-09-07 21:55:41 +02:00
Timo Kaufmann
770c5b8a69 sage: 8.4.beta3 -> 8.4.beta4 2018-09-07 20:56:37 +02:00
Timo Kaufmann
4ab832d6e7 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-09-07 20:54:09 +02:00
Timo Kaufmann
7521f2863d sage: fix numpy and scipy integration 2018-09-07 18:36:52 +02:00
Profpatsch
3e45b61a99 lib/trivial: add a few examples of usage of assertMsg/assertOneOf 2018-09-06 18:14:27 +02:00
Daniël de Kok
590ce7d1ae mxnet: fix library dependencies. 
- mxnet now builds the open source MKL DNN library. However, this
  was not included with the build.
- mxnet builds its own OpenMP library, even when OpenMP is provided
  by the system. This leads to problems, so remove the included
  OpenMP implementation:

  https://github.com/apache/incubator-mxnet/pull/12160
 2018-09-04 20:27:25 +02:00
Daniël de Kok
93a5947158 mxnet: 1.1.0 -> 1.2.1 (#46026) 
Update and fix the build:

- Perl is a build-time requirement.
- Fix hardcoded /bin/bash invocation.
 2018-09-04 11:37:54 +02:00
Timo Kaufmann
46e653673e sage: 8.4.beta2 -> 8.4.beta3 2018-09-02 12:42:44 +02:00
xeji
a3434cf4e5
Merge pull request #45921 from markuskowa/homepages 
Cleanup homepage links
 2018-09-02 08:39:30 +02:00
Markus Kowalewski
5cf25dded7
symmetrica: update homepage 2018-09-02 01:46:25 +02:00
Markus Kowalewski
c184150a22
jags: update homepage + fix license 2018-09-02 01:46:18 +02:00
Robert Schütz
93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
John Ericson
2c2f1e37d4 reewide: Purge all uses stdenv.system and top-level system 
It is deprecated and will be removed after 18.09.
 2018-08-30 17:20:32 -04:00
Frederik Rietdijk
6038628ea5 Merge master into staging-next 2018-08-29 20:54:55 +02:00
R. RyanTM
e301589013 gmsh: 3.0.6 -> 4.0.0 (#45592) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions.
 2018-08-27 16:06:28 +02:00
Frederik Rietdijk
7945295410 Merge master into staging 2018-08-27 08:21:50 +02:00
Timo Kaufmann
c614c15f93
Merge pull request #45257 from timokau/openblas-pc 
openblas: add pkg-config aliases
 2018-08-26 20:13:19 +02:00
Timo Kaufmann
0e4160a3a1 pythonPackages.sympy: 1.1.1 -> 1.2 2018-08-26 19:56:44 +02:00
Timo Kaufmann
1b42a1ba1e sage: 8.4.beta1 -> 8.4.beta2 2018-08-26 13:09:22 +02:00
Timo Kaufmann
26d5d030fe openblas: add pkg-config aliases 2018-08-21 16:39:57 +02:00
Markus Kowalewski
a1129ef9cb
glsurf: add license 2018-08-20 21:15:16 +02:00
Markus Kowalewski
3c1819fcce
ginac: add license 2018-08-20 21:02:45 +02:00
Vladimír Čunát
cbabebcc2e
Merge branch 'master' into staging-next 
Hydra: ?compare=1473892
 2018-08-17 13:45:21 +02:00
zimbatm
b7e50d52f0
caffe: add darwin support (#44616) 2018-08-16 12:46:51 +01:00
Gabriel Ebner
f207998d79 qalculate-gtk: 2.6.1 -> 2.6.2 2018-08-16 11:56:27 +02:00
Bernard Fortz
22c15abe20 cplex: init at 12.8 (#44029) 
* cplex: init at 12.8

* Removed bundled java from bin directory

* Refactored

* More refactoring

* Added config option for releasePath

* Minor cleanup
 2018-08-15 19:46:09 -05:00
Timo Kaufmann
52b9217b50 sage: 8.4.beta0 -> 8.4.beta1 2018-08-16 00:17:14 +02:00
Timo Kaufmann
df97127114 Merge remote-tracking branch 'upstream/master' into sage-8.4 2018-08-15 13:51:07 +02:00
adisbladis
2937e7367f
Merge pull request #45009 from jbaum98/ratpoints-darwin 
ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support
 2018-08-15 15:28:39 +08:00
Jörg Thalheim
0ee6d7e3ab
Merge pull request #45011 from jbaum98/symmetrica-darwin 
symmetrica: Add darwin support
 2018-08-15 07:54:56 +02:00
Jake Waksbaum
47aa6abe96 ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support 2018-08-14 11:27:59 -04:00
Jake Waksbaum
8ae47fa81a symmetrica: Add darwin support 2018-08-14 11:23:21 -04:00
Jake Waksbaum
be81e1e29c gfan: Add darwin support 2018-08-14 00:16:46 -04:00
Vladimír Čunát
00df25ee57
Merge branch 'master' into staging-next 
Hydra: ?compare=1472947
 2018-08-12 10:33:41 +02:00
Jake Waksbaum
3babbaaa47 palp: Add darwin support (#44829) 2018-08-09 22:28:27 +02:00
Frederik Rietdijk
d9fa74ba78 Merge master into staging 2018-08-09 18:28:15 +02:00
Timo Kaufmann
291018b34e arb: 2.13.0 -> 2.14.0 (#44600) 2018-08-07 16:38:34 +02:00
symphorien
0ca40a51c7 gwyddion, ripser: fix derivation name (#44577) 2018-08-07 01:21:53 +02:00
Timo Kaufmann
a8b048c686 sage: 8.3 -> 8.4.beta0 2018-08-05 21:09:56 +02:00
Michael Raskin
75cb04672f
Merge pull request #44508 from timokau/cddlib-0.94j 
cddlib: 0.94i -> 0.94j
 2018-08-05 19:03:47 +00:00
Timo Kaufmann
0a44ff7676 cddlib: 0.94i -> 0.94j 
cddlib was autotoolized, incorporated equivalents to the sage patches
and moved to GitHub.
 2018-08-05 19:02:45 +02:00
Michael Raskin
6b0234942b
Merge pull request #44501 from timokau/sage-native-pari 
sage: don't override pari
 2018-08-05 15:14:00 +00:00
Timo Kaufmann
30c822189d sage: don't override pari 
Sage assumes that pari does not use threads. However instead of
disabling them at compile time, we can diable them at runtime instead.
As a result, sage doesn't need its own version of pari anymore. That
means less rebuilds, less complexity and easier debugging.
 2018-08-05 13:48:14 +02:00
Michael Raskin
58384b1dd0 scilab-bin: 5.5.2 -> 6.0.1 2018-08-05 11:27:35 +03:00
Michael Raskin
b79dbfe482
Merge pull request #43281 from timokau/sage-8.3 
sage: 8.2 -> 8.3
 2018-08-04 13:02:06 +00:00
Timo Kaufmann
834a24e0ff sage: don't pin ntl 
Now possible because of the lcalc c++11 patch.
 2018-08-04 14:22:58 +02:00
Timo Kaufmann
e550e5d0c7 lcalc: apply c++11 patch 2018-08-04 14:22:29 +02:00
Timo Kaufmann
fa34f6d41c sage: don't pin pari 2018-08-04 14:22:28 +02:00
Timo Kaufmann
e82c26af9b sage: don't pin singular 2018-08-04 14:22:28 +02:00
Timo Kaufmann
289173366b singular: backport ntl error handling patch 2018-08-04 14:22:27 +02:00
Timo Kaufmann
840b64fdb8 sage: 8.2 -> 8.3 2018-08-04 14:22:21 +02:00
Tuomas Tynkkynen
008fd5fcf5 Merge remote-tracking branch 'upstream/master' into staging 2018-08-04 15:17:42 +03:00
John Ericson
db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
John Ericson
632d24f11f scilab: Make configureFlags a list 2018-08-03 17:05:58 -04:00
Robert Schütz
ae3bbf2958 almonds: use python3 2018-08-03 18:04:46 +02:00
Johannes Frankenau
79cd841713 bcal: 1.8 -> 1.9 2018-08-03 09:08:26 +02:00
R. RyanTM
38c8be3726 gp2c: 0.0.10pl1 -> 0.0.11 (#43941) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions.
 2018-07-31 00:30:21 +02:00
Timo Kaufmann
ae821e09e7 glpk: adopt error recovery patch (#44201) 
This makes it possible to use "vanilla" glpk for sage and shouldn't
affect anything else.
 2018-07-29 20:53:56 +02:00
Frederik Rietdijk
1fe2a0f81e
Merge pull request #44129 from timokau/pari-2.11.0 
pari: 2.9.5 -> 2.11.0
 2018-07-27 11:57:57 +02:00
Timo Kaufmann
330c501be0 pari: 2.9.5 -> 2.11.0 
The pari update makes it necessary to disable a giac test that only
fails because it directly tests the pari interface.
 2018-07-26 18:42:17 +02:00
Timo Kaufmann
024c23503c singular: 4.1.1p1 -> 4.1.1p2 2018-07-23 12:17:25 +02:00
Jörg Thalheim
218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
volth
52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth
6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk
1a6af9f88e
Merge pull request #43857 from volth/unused 
[bot] treewide: remove unreferenced code
 2018-07-20 21:06:32 +02:00
volth
87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
Matthew Bauer
fddd90e9ea
Merge pull request #43538 from timokau/fetchpatch-fix 
fetchpatch: quote excludes
 2018-07-19 00:35:09 -04:00
Michael Raskin
877899fdb9
Merge pull request #43679 from timokau/ntl-11.2.1 
ntl: 9.11.0 -> 11.2.1
 2018-07-18 15:08:43 +00:00
Jan Tojnar
a4443ef859
nasc: 0.4.6 → 0.4.7 2018-07-18 15:38:52 +02:00
Timo Kaufmann
cad446513e ntl: 9.11.0 -> 11.2.1 
ntl hasn't been updated in a while. So I'm doing that and adding myself
as the maintainer. I'm also adding some options and pinning the sage
dependency, since it is unfortunately not compatible with the latest ntl
yet.

I've also enabled the tests, since they don't take terribly long and are
worth the time in my opinion.
 2018-07-18 14:58:38 +02:00
Timo Kaufmann
3058513941 fetchpatch: add option to revert a patch 2018-07-16 22:46:54 +02:00
Jan Malakhovski
e80ca2182c clp: cleanup expression 2018-07-16 16:33:14 +00:00
fragamus
794a60a2fb bliss: fix header location (#43170) 2018-07-16 04:12:07 +00:00
Shea Levy
ed23255c5a
Merge branch 'init-gurobi' of git://github.com/jfrankenau/nixpkgs 2018-07-15 18:25:07 -04:00
Timo Kaufmann
c77d1e5b31 eclib: 20171219 -> 20180710 
Also includes the necessary sage compatibility patch, borrowed from
ArchLinux.
 2018-07-15 14:59:28 +02:00
Johannes Frankenau
d6874a7e1e gurobi: init at 8.0.1 2018-07-14 23:52:48 +02:00
Timo Kaufmann
85f7fa93bc pythonPackages.cypari2: 1.1.4 -> 1.2.1 (#43496) 2018-07-14 00:17:55 +02:00
Timo Kaufmann
35896e3506 sage: replace flask-babel version pin by patch 2018-07-12 22:55:16 +02:00
R. RyanTM
ade3e571a1 qalculate-gtk: 2.6.0 -> 2.6.1 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions.
 2018-07-11 00:45:08 -07:00
R. RyanTM
99cb9de551 fricas: 1.3.3 -> 1.3.4 (#43023) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/fricas/versions.

These checks were done:

- built on NixOS
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/fricas passed the binary check.
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/efricas passed the binary check.
- 2 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.3.4 with grep in /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4
- directory tree listing: https://gist.github.com/75d751d9733f6b0a7b582ab838a71963
- du listing: https://gist.github.com/4c6fe5f342430a2b36568da3229d3dc4
 2018-07-09 16:02:58 +02:00
Gabriel Ebner
887b6fd793 qalculate-gtk: 2.5.0 -> 2.6.0 2018-07-05 12:33:27 +02:00
Silvan Mosberger
fac943fc81
Merge pull request #42897 from fragamus/master 
add bliss package
 2018-07-04 13:59:41 +02:00
Michael Gough
e3ea685957 bliss: init at 0.73 2018-07-04 11:33:10 +00:00
Timo Kaufmann
dcc1013f6b pythonPackages.backports_shutil_get_terminal_size: 1.0 -> 2016-02-21 (#42840) 2018-07-02 18:03:05 +02:00
Sarah Brofeldt
f06ce58323
Merge pull request #42843 from fragamus/master 
hmetis: init at 1.5
 2018-07-02 11:40:41 +02:00
Peter Simons
cbc1a03ab8 R: update to version 3.5.1 
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
 2018-07-02 11:33:50 +02:00
Michael Gough
f180facaa0 hmetis: init at 1.5 2018-07-01 18:29:55 +00:00
Timo Kaufmann
70ba695777 sage: replace JUPYTER_PATH patch by upstream patch 
The patch was replaced by a better upstream patch that doesn't mvoe the
jupyter dir to the user's home.
 2018-06-30 22:30:30 +02:00
Timo Kaufmann
398dad270a sage, arb: update sage dependencies arb and pynac 
Removes the version pinning for arb and pynac by backporting the
upstream (sage) package upgrades. This necessitates a new patch for arb,
which was however already proposed and accepted upstream.
 2018-06-30 17:05:56 +02:00
Timo Kaufmann
17e6b391eb sage: 8.1 -> 8.2, use system packages 2018-06-30 01:21:31 +02:00
Timo Kaufmann
424835acc8 symmetrica: add patches 2018-06-30 01:20:46 +02:00
Silvan Mosberger
57bccb3cb8 treewide: http -> https sources (#42676) 
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
 2018-06-28 20:43:35 +02:00
Timo Kaufmann
9ce041a8c7 pynac: 0.7.21 -> 0.7.22 (#42650) 2018-06-27 15:41:29 +02:00
Timo Kaufmann
2b22ecf01e palp: restrict platforms to linux (#42651) 2018-06-27 15:28:39 +02:00
Timo Kaufmann
08a59bb10d palp: fix runtime error introduced by #28029 (#42633) 
After #28029 it is necessary to add "strictoverflow" to the disabled
hardening flags. That probably has something to do with the `-O3` option
in palps makefile.

This commit also adds a test to check for this regression (as it only
occured at runtime).
 2018-06-27 09:42:26 +02:00
Maximilian Bosch
0dbfa47ed1 geogebra: 5-0-444-0 -> 5-0-472-0 (#41990) 
Bumped to the latest version available.

Also tested the `web.archive.org` backup to avoid broken downloads when
the tarball is removed from the official download mirror.
 2018-06-17 18:04:14 +02:00
R. RyanTM
d50e65b346 pynac: 0.7.19 -> 0.7.21 (#41662) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pynac/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.7.21 with grep in /nix/store/883yhmfc1k4vz1dd37l73v7clvnyaa3v-pynac-0.7.21
- directory tree listing: https://gist.github.com/a0f53cebb1c4cae07c81edef938ac632
- du listing: https://gist.github.com/78800724710d0766e4add7ed1847c3fc
 2018-06-08 19:02:38 +02:00
Ryan Mulligan
af9d10a91b treewide: fix derivation names 2018-05-28 05:59:57 -07:00
Gabriel Ebner
d96cc05a60 qalculate-gtk: 2.3.0 -> 2.5.0 2018-05-24 18:19:55 +02:00
Sarah Brofeldt
6ea941d3fd gmsh: gfortran -> nativeBuildInputs (fix #40976) (#40984) 2018-05-23 17:32:43 +02:00
Dmitry Kalinkin
65c3273250 form: init at 4.2.0 (#40693) 2018-05-22 20:17:32 +02:00
R. RyanTM
b34f0a11dc pari: 2.9.4 -> 2.9.5 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pari/versions.

These checks were done:

- built on NixOS
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/tex2mail passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gphelp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp-2.9 passed the binary check.
- 4 of 4 passed binary check by having a zero exit code.
- 0 of 4 passed binary check by having the new version present in output.
- found 2.9.5 with grep in /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5
- directory tree listing: https://gist.github.com/63c5da24ace1d863b434a462fc0d0123
- du listing: https://gist.github.com/d275cd2f3b274f52576dbab1bf9ebc9c
 2018-05-21 08:53:00 +00:00
Pascal Wittmann
97ab2d40cb
Merge pull request #40614 from symphorien/ries 
ries: init at 2018-04-11
 2018-05-17 21:30:47 +02:00
Symphorien Gibol
ea7404dcd7 ries: init at 2018-04-11 2018-05-17 14:09:33 +02:00
R. RyanTM
de49ba6c3f nauty: 26r7 -> 26r10 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/nauty/versions.

These checks were done:

- built on NixOS
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dreadnaut passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/copyg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/listg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/labelg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/amtog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/geng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/complg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/showg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/NRswitchg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/biplabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/addedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/deledgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/countg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/pickg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genrang passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/newedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/catg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/directg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentreeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genquarticg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/ranlabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/multig passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/planarg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentourng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/linegraphg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/watercluster2 had a zero exit code or showed the expected version
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretodot passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/subdivideg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/vcolg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/delptg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/cubhamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/twohamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/hamheuristic passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/converseg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genspecialg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbgL passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/shortg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/configure had a zero exit code or showed the expected version
- 38 of 40 passed binary check by having a zero exit code.
- 0 of 40 passed binary check by having the new version present in output.
- directory tree listing: https://gist.github.com/3bca602211d416ba58097f4f8880b6d0
- du listing: https://gist.github.com/4ac19efe14e18aae8fece0ec1a500bf1
 2018-05-17 03:57:50 -07:00
Matthew Bauer
e0d6edddd7 pspp: provide default icons & settings 
psppire needs to be wrapped so that it will work outside of GNOME
desktop. We provide hicolor-icon-theme & gsettings-desktop-schemas.

Note that at runtime, I still get this error:

- Cannot create a converter for `IBM864' to `UTF-8': Invalid argument

Possibly a locale issue.

Fixes #40558
 2018-05-15 15:42:13 -05:00
Timo Kaufmann
053d1e0339 giac: re-add lapack without atlas (#40 (#40458) 
giac: re-add lapack without atlas
 2018-05-14 12:47:45 +02:00
Timo Kaufmann
5550015b20 giac: remove liblapackWithAtlas dependency (#40430) 2018-05-13 18:33:51 +02:00
John Ericson
ae429f8e55 yacas: 1.2.2 -> 1.6.1 
They switched to cmake and talk about mingw cross, so I can kill
crossAttrs too.
 2018-05-10 11:42:08 -04:00
Lengyel Balazs
1f1e16af73 mathematica: add mesa, fix libGL.so.1 not found messages 2018-05-04 13:10:26 +02:00
Matthew Bauer
57a4db2449 pspp: supports darwin 2018-05-01 00:45:05 -05:00
Michael Raskin
1f909a8dfc
Merge pull request #39403 from timokau/maxima-exl-testfailures-2 
maxima-ecl: Disable more failing tests
 2018-04-24 15:44:04 +00:00
Matthew Justin Bauer
d57e6466e0
Merge pull request #39377 from timokau/pari-pthread 
pari: Make pthread optional, remove unstable
 2018-04-24 10:03:01 -05:00
Timo Kaufmann
396b5d9c65 maxima-ecl: Disable more failing tests 2018-04-24 13:38:44 +02:00
Timo Kaufmann
75b0866d0c pari: Make pthread optional, remove unstable 2018-04-24 12:54:59 +02:00
Michael Raskin
bc6f7a9ccf
Merge pull request #39370 from timokau/singular-ntl 
singular: Fix ntl dependency
 2018-04-24 10:54:23 +00:00
Timo Kaufmann
ba389086de singular: Fix ntl dependency 2018-04-24 12:04:28 +02:00
Timo Kaufmann
b707c91814 maxima-ecl: Disable failing tests 2018-04-24 11:16:55 +02:00
Peter Simons
6799fcb42b R: 3.4.4 -> 3.5.0 
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
 2018-04-24 09:19:13 +02:00
Matthew Justin Bauer
a02d6c99af
Merge pull request #34014 from mnacamura/mathematica-l10n 
mathematica: enable installation of localized editions
 2018-04-23 11:58:34 -05:00
Jörg Thalheim
c7d278ad07
Merge pull request #39351 from matthewbauer/calc-on-darwin 
calc: cleanup expression
 2018-04-23 08:07:13 +01:00
Matthew Bauer
63507ada7d calc: cleanup expression 
Fixes #39321

(Still needs testing on Linux)
 2018-04-22 19:01:25 -05:00
Timo Kaufmann
be0b8f2cf6 palp: init at 2.1 2018-04-21 20:40:59 -05:00
Timo Kaufmann
7dc6b2e3c3 pynac: init at 0.7.19 2018-04-21 20:40:22 -05:00
Matthew Justin Bauer
1bb28f26e8
Merge pull request #38810 from timokau/giac-improvements 
giac: enable checks, separate outputs
 2018-04-19 12:03:53 -05:00