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1457 Commits

Author SHA1 Message Date
Johannes Arnold
e3d982dfee speedcrunch: 0.12.0 -> unstable-2021-10-09 2021-12-31 10:04:07 +01:00
7c6f434c
3c5bd4a74c
Merge pull request #152409 from collares/singular-maxprocess 
singular: backport patch to fix docbuilding with >= 64 cpus
 2021-12-30 16:35:18 +00:00
Johannes Arnold
5ca1d45da3 speedcrunch: use proper fetcher 2021-12-29 17:52:11 +01:00
Mauricio Collares
ec0c4a001f singular: backport patch to fix docbuilding with >= 64 cpus 2021-12-27 22:29:15 -03:00
Doron Behar
ac048e82e3
Merge pull request #147826 from doronbehar/pkg/yacas 
yacas: Fix gui and jupyter build
 2021-12-26 21:39:27 +02:00
github-actions[bot]
f04946ad25
Merge master into staging-next 2021-12-24 18:01:11 +00:00
Mauricio Collares
93f9a9c36d sage: assume fonttools DeprecationWarnings are expected for now 2021-12-21 23:10:07 -03:00
FliegendeWurst
c080917139 geogebra: 5-0-662-0 -> 5-0-680-0 2021-12-21 17:09:50 +01:00
7c6f434c
d5db292192
Merge pull request #151424 from collares/sage-matplotlib 
[staging-next] sage: import matplotlib and sphinx update patches
 2021-12-21 12:55:50 +00:00
Mauricio Collares
3eaca311d4 sage: import matplotlib and sphinx update patches 2021-12-20 10:09:35 -03:00
R. Ryantm
57ff8c2e36 qalculate-gtk: 3.21.0 -> 3.22.0 2021-12-19 07:38:29 +00:00
qbg
24111d6a7a
mathematica: 12.3.1 -> 13.0.0 (#151213) 
https://wolfram.com/mathematica/quick-revision-history.html#v130
 2021-12-18 23:24:27 -05:00
Dmitry Kalinkin
50a4c52747
Merge pull request #147648 from veprbl/pr/mxnet_1_8_0 
mxnet: 1.6.0 -> 1.8.0, enable on darwin
 2021-12-16 22:37:03 -05:00
Mauricio Collares
9b35049770 sage: import arb 2.21.0 test fixes 2021-12-13 11:16:33 -03:00
Mario Rodas
e09a539ccb
Merge pull request #150166 from r-ryantm/auto-update/gmsh 
gmsh: 4.8.4 -> 4.9.0
 2021-12-11 22:52:19 -05:00
Jörg Thalheim
4e5d03cd21
Merge pull request #150111 from r-ryantm/auto-update/gretl 
gretl: 2021b -> 2021d
 2021-12-11 13:34:40 +00:00
R. Ryantm
2d939d3262 gmsh: 4.8.4 -> 4.9.0 2021-12-11 01:08:58 +00:00
R. Ryantm
7abc2f38b4 gretl: 2021b -> 2021d 2021-12-10 19:06:52 +00:00
R. Ryantm
1ceac72697 gurobi: 9.1.2 -> 9.5.0 2021-12-10 15:29:40 +00:00
Maximilian Bosch
c87f93843c
Merge pull request #148905 from r-ryantm/auto-update/calc 
calc: 2.13.0.1 -> 2.14.0.8
 2021-12-10 01:22:16 +01:00
R. Ryantm
5a5f052be8 polymake: 4.4 -> 4.5 2021-12-08 10:49:07 +00:00
R. Ryantm
6c000f4835 calc: 2.13.0.1 -> 2.14.0.8 2021-12-06 07:03:08 +00:00
qbg
b5b4a6ac4f
mathematica: Install desktop items (#147641) 2021-12-02 15:17:23 +02:00
Doron Behar
50ba747abe yacas: Fix gui and jupyter build 
- Add a patch fixing jsoncpp include.
- Add a build flag for java support.
- Add a `yacas-gui` build that is built with Gui (and jupyter support disabled).
- Enable tests.
- Reformat expression with a 1 input / argument per line.
 2021-12-01 01:51:31 +02:00
Doron Behar
57ab62314b maxima, sage: Simplify lisp-compiler arguments namings 
Make clearer the difference between `maxima` and `maxima-ecl` top-level
attributes. Use the `lisp-compiler` as a passthru for all of sage's
expressions. Add the `pname` attribute for `ecl` for compatibility with
other lisp implementations.
 2021-11-29 15:51:30 +02:00
Doron Behar
8d17f4babf maxima: 5.45.0 -> 5.45.1 
- Reformat expression with 1 line per input / argument
- Add @doronbehar as maintainer.
 2021-11-29 15:51:29 +02:00
Doron Behar
8d227fe05c wxmaxima: 21.05.2 -> 21.11.0 
- Remove the `Version-` prefix from the version.
- Add @doronbehar as maintainer.
 2021-11-29 14:41:57 +02:00
Dmitry Kalinkin
51bf009063
mxnet: 1.6.0 -> 1.8.0 2021-11-28 17:27:31 -05:00
Dmitry Kalinkin
b39504da72
mxnet: fix for gcc10+, enable on darwin 2021-11-28 17:27:11 -05:00
Sandro
5d6a70c260
Merge pull request #147202 from voidIess/u/geogebra_6_0_672_0 2021-11-28 03:51:46 +01:00
Chad Jablonski
7944324d80 programmer-calculator: 2.1 -> 2.2 2021-11-26 23:19:39 -05:00
voidless
a34736a38f geogebra6 6-0-644-0 -> 6-0-676-0 2021-11-24 23:15:54 +01:00
7c6f434c
b56d7a70a7
Merge pull request #146792 from SuperSandro2000/R 
R: manually fix things after patches got applied
 2021-11-21 08:57:26 +00:00
Mauricio Collares
1ee4cb8d93
sage: patch test so that new pari warning doesn't cause failures (#4) 2021-11-20 20:13:07 -03:00
Sandro
00a52ef677
R: manually fix things after patches got applied 
This prevents conflicts in case a patch changes the same line
 2021-11-20 21:10:28 +01:00
AndersonTorres
dc2cad8150 gp2c: cosmetical changes 2021-11-19 20:35:16 -03:00
AndersonTorres
3845245d71 pari: 2.13.1 -> 2.13.3 2021-11-19 20:35:16 -03:00
Yurii Matsiuk
29ed2bbe02
fricas: fix build 2021-11-19 21:06:44 +01:00
Doron Behar
4d28812ef4 qalculate-gtk: 3.20.1 -> 3.21.0 
Add @doronbehar as maintainer to qalculate-gtk and libqalculate.
 2021-11-19 09:15:32 +02:00
Sébastien Maret
7a5f0ec2d1 R: fix build on Darwin 
Closes #146131.
 2021-11-17 11:08:50 +01:00
Mario Rodas
f20b2bb9f5
Merge pull request #143551 from r-ryantm/auto-update/scotch 
scotch: 6.0.4 -> 6.1.1
 2021-11-14 21:16:10 -05:00
Felix Buehler
b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Justin Bedő
7016c7df1c
Merge pull request #144820 from NixOS/r-updates 
R,rPackages: R 4.1.1 -> 4.1.2, rPackages BioC 3.13 -> 3.14
 2021-11-07 08:12:10 +11:00
Matt Christ
065281add0 cemu: mark as broken on darwin 
https://github.com/NixOS/nixpkgs/pull/144889#issuecomment-962469610
 2021-11-06 13:54:44 -07:00
Matt Christ
2771743966 cemu: add link-time-compile-gen, build with gcc9stdenv 2021-11-06 13:54:44 -07:00
Mauricio Collares
076563ebac sage: import sympy 1.9 update patch 2021-11-04 18:53:06 +01:00
Bobby Rong
2483e778d4
treewide: set meta.mainProgram for packages teams.pantheon.members maintain 2021-11-03 19:07:21 +08:00
Justin Bedo
257a939cfc
R: 4.1.1 -> 4.1.2 2021-11-02 17:42:34 +11:00
R. Ryantm
a5403b9a36 scotch: 6.0.4 -> 6.1.1 2021-10-29 03:59:24 +00:00
R. Ryantm
760160e64d bcal: 2.2 -> 2.3 2021-10-29 02:44:23 +00:00
Nikolay Korotkiy
89707c93aa
pcalc: enable on darwin 2021-10-28 12:47:11 +03:00
Justin Bedő
0689e7368d
Merge pull request #142333 from NixOS/r-updates 
rPackages: update R, CRAN, and BIOC
 2021-10-22 14:33:46 +11:00
Justin Bedo
71eeb7ee56
Merge remote-tracking branch 'origin/master' into r-updates 2021-10-17 21:41:51 +11:00
Justin Bedo
3a0bdda3d9
R: add myself to maintainers 2021-10-17 08:41:58 +11:00
superherointj
206f3ab323 pythonPackages.jupyter_client: renamed to jupyter-client 2021-10-15 07:51:23 -03:00
Peter Simons
476635afe1 Drop myself from meta.maintainers for most packages. 
I'd like to reduce the number of Github notifications and
review requests I receive.
 2021-10-14 11:01:27 +02:00
Mario Rodas
4662abd3b4 R: don't restrict hydraPlatforms 
The restriction of hydraPlatforms was added in [1: ef05fad51a], but
doesn't seem to be a real reason behind it. R is Free Software and it
take takes a few minutes to build so I believe it can be distributed by
Hydra.

1: 2014-05-04 ef05fad51a
   R: don't restrict meta.platforms to Linux; other architectures should build fine
 2021-10-01 04:20:00 +00:00
Mauricio Collares
a5a7c33e77 threejs-sage: install in expected location 
Co-authored-by: Timo Kaufmann <timokau@zoho.com>
 2021-09-28 19:06:48 +02:00
Ryan Burns
813c400edc cntk: fix build with protobuf 3.18+ 2021-09-23 02:16:17 -07:00
Ryan Burns
e12802213e caffe: fix build with protobuf 3.18+ 2021-09-22 21:57:13 -07:00
markuskowa
b4f1a1338f
Merge pull request #138512 from r-burns/csdp 
[staging-next] Revert "csdp: move gfortran to nativeBuildInputs"
 2021-09-20 12:18:40 +02:00
Alyssa Ross
e2bb7997c4
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	nixos/doc/manual/release-notes/rl-2111.section.md
 2021-09-19 17:08:00 +00:00
Ryan Burns
b23afbb866 Revert "csdp: move gfortran to nativeBuildInputs" 
We are not using gfortran as a native binary; we are using its lib.

Fixes build on darwin.

This reverts commit eabbf45b60.
 2021-09-19 02:35:27 -07:00
Bobby Rong
0fd8cc3908
treewide: switch from pantheon.maintainers to lib.teams.pantheon 2021-09-18 23:07:00 +08:00
github-actions[bot]
d370d9ee99
Merge staging-next into staging 2021-09-11 18:01:51 +00:00
Stephen Morgan
28b5133cce geogebra: 5-0-644-0 -> 5-0-662-0 2021-09-11 23:49:13 +10:00
Markus Kowalewski
35a17a0cfe
scilab: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski
74443bc786
jags: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski
eabbf45b60
csdp: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Michael Raskin
df3f3ccc6d
Merge pull request #136250 from collares/sage-networkx 
sage: adapt tests for networkx 2.6
 2021-08-31 07:52:29 +00:00
Mauricio Collares
7194273c77 sage: adapt tests for networkx 2.6 2021-08-30 22:43:24 -03:00
schotts-fired
9ec4fb0cd1 R: add memory profiling compile option 2021-08-30 18:24:42 +02:00
davidak
d18866b1c2 nasc: 0.7.5 -> 0.8.0 2021-08-23 23:23:52 +02:00
Mauricio Collares
46c3703ec1 sage: 9.3 -> 9.4 2021-08-22 09:53:12 -03:00
Mauricio Collares
9be264795c pynac: import segfault fix 2021-08-22 09:53:12 -03:00
Mauricio Collares
b565d30c47 maxima: 5.44.0 -> 5.45.0 2021-08-22 09:53:08 -03:00
Sandro Jäckel
026fb18487
ginac: switch to pname + version, cleanup 2021-08-21 11:20:15 +02:00
Sandro
a9f66e941d
Merge pull request #134390 from smancill/colpack-darwin 
colpack: refactor builder and build on darwin
 2021-08-20 23:58:11 +02:00
Sebastián Mancilla
50062cc371 colpack: refactor builder and build on darwin 
- Use autoreconfHook and set flags with configureFlags.
- Only enable OpenMP on Linux, so it can be built on Darwin.
- Do not install .la file. Other distros also remove them.
- Do not build examples.
- Install example sources into a proper location.
- Fixed license.
 2021-08-19 15:51:23 -04:00
Sandro
ac9f41a782
Merge pull request #134393 from smancill/bump-lp-solve 
lp_solve: 5.5.2.5 -> 5.5.2.11
 2021-08-19 21:36:59 +02:00
Zhenya Vinogradov
6714723bfa sage: fix icon location in the kernel definition 
The icon location is incorrect, `doc` directory exists inside `src`
directory, but not on the top level.
 2021-08-19 12:20:35 +03:00
Sebastián Mancilla
514c8569aa lp_solve: 5.5.2.5 -> 5.5.2.11 
- Use the generic builder and override build and install phases instead
  of using buildCommand and missing phases and hooks, like fixup.

- Fix build on Darwin by using the proper build script (ccc.osx).

  - Add cctools to build inputs because ccc.osx uses the libtool
    command.

  - The install_name of the library is not set so fix it with
    fixDarwinDylibNames.

- Install headers into the expected location $out/include/lpsolve
  instead of $out/include. This follows what other distro do.
 2021-08-17 23:20:47 -04:00
Artturi
8ba3c63144
Merge pull request #133998 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 21.02.0 -> 21.05.2
 2021-08-17 23:00:21 +03:00
R. RyanTM
cbd7e0dec1 qalculate-gtk: 3.19.0 -> 3.20.1 2021-08-17 16:04:54 +00:00
R. RyanTM
0ba50b681e wxmaxima: 21.02.0 -> 21.05.2 2021-08-14 11:51:36 +00:00
Michael Raskin
1350415b52
Merge pull request #127798 from PhDyellow/r_bump_version 
R: 4.0.4 -> 4.1.0
 2021-08-13 13:41:07 +00:00
Phil Dyer
a21caa7f19 Remove unused fetchpatch from inputs 2021-08-13 10:19:31 +10:00
Phil Dyer
7f07184a8e Add Patch for aarch64 2021-08-13 10:16:59 +10:00
Phil Dyer
d37edcd3d5 R: 4.1.0 -> 4.1.1 2021-08-11 16:41:53 +10:00
R. RyanTM
e36200fc36 ginac: 1.8.0 -> 1.8.1 2021-08-10 07:09:09 +00:00
Sandro
fd26f351b5
Merge pull request #131493 from collares/polymake-4.4 
polymake: 3.2.rc4 -> 4.4
 2021-08-08 12:30:59 +02:00
Felix Buehler
7b20eb9e37 scilab-bin: remove phases 2021-08-03 00:03:12 +02:00
Ben Siraphob
2f94991628 treewide: fix redirected URLs 
Using the script in maintainers/scripts/update-redirected-urls.sh
 2021-08-01 00:01:50 +07:00
Frederik Rietdijk
8f6b07c223 maxima: use strictDeps and python3 2021-07-27 20:37:06 +02:00
Phil Dyer
9a88197fe7 R: 4.0.4 -> 4.1.0 
Co-authored-by: Mauricio Collares <244239+collares@users.noreply.github.com>
 2021-07-27 12:32:00 +10:00
Mauricio Collares
045d6f35d9 polymake: 3.2.rc4 -> 4.4 2021-07-25 20:12:21 -03:00
Jörg Thalheim
d4b8356ce2 pcalc: 20141224 -> 20181202 2021-07-18 08:40:09 +02:00
Felix Buehler
82cb33a0ae treewide: remove meta.version 2021-07-18 00:07:38 +02:00
Mauricio Collares
183071d282 pynac: 0.7.27 -> 0.7.29 2021-07-16 19:30:11 -03:00
FliegendeWurst
5a1b72a6b1 mathematica: 12.3.0 -> 12.3.1 2021-07-15 15:29:33 +02:00
R. RyanTM
d342554ec5 engauge-digitizer: 12.1 -> 12.2.2 2021-07-12 14:06:35 +00:00
markuskowa
13b3e91794
Merge pull request #128856 from cburstedde/package-petsc-p4est 
petsc: refactor using mpi and p4est
 2021-07-12 11:46:44 +02:00
Phillip Seeber
5c4d869ada engauge-digitizer: init at 12.1 
code-review hints


engauge-digitizer: code review suggestions
 2021-07-09 13:27:30 +02:00
Carsten Burstedde
25456656ef
Merge branch 'master' into package-petsc-p4est 2021-07-06 07:19:35 +02:00
Sandro
90fa755d73
Merge pull request #123692 from collares/eclib-20210503 2021-07-06 01:59:32 +02:00
Carsten Burstedde
705afbd338
Merge branch 'master' into package-petsc-p4est 2021-07-05 19:30:59 +02:00
github-actions[bot]
a6fdcf8d52
Merge master into staging-next 2021-07-04 12:01:06 +00:00
Gabriel Ebner
5fd14f54c7 qalculate-gtk: 3.18.0 -> 3.19.0 2021-07-04 10:41:23 +02:00
github-actions[bot]
89ee82a6e9
Merge master into staging-next 2021-07-04 06:01:11 +00:00
Mauricio Collares
30cd543b32 eclib: 20190909 -> 20210625, import sage update patch 2021-07-03 12:55:52 -03:00
Robert Schütz
1ec5651913 treewide: use pythonPackages.python-dateutil instead of pythonPackages.dateutil 2021-07-03 13:45:57 +02:00
github-actions[bot]
dcd8f68f13
Merge master into staging-next 2021-07-02 00:01:33 +00:00
Carsten Burstedde
870b2847a4
getdp: align with latest petsc dependency 2021-07-01 22:57:26 +02:00
Mauricio Collares
17e024867f sage: import sphinx and sympy update patches, update pari 2.13 patch 2021-06-30 20:26:16 -03:00
github-actions[bot]
1f528e6ac6
Merge staging-next into staging 2021-06-24 00:06:31 +00:00
Anderson Torres
65db0350fe
Merge pull request #127905 from AndersonTorres/new-4ti2 
4ti2: init at 1.6.9
 2021-06-23 21:01:05 -03:00
AndersonTorres
68dd7bca1b 4ti2: add myself to maintainers 2021-06-23 20:23:30 -03:00
sternenseemann
ba01fb866a glsurf: use ocamlPackages_4_05 
Update to somewhat newer OCaml, so we can hopefully retire older sets in
the future.
 2021-06-23 14:52:32 +00:00
AndersonTorres
4b0789d7c5 4ti2: init at 1.6.9 2021-06-23 10:35:00 -03:00
Sandro
b2a93084f0
Merge pull request #127355 from cjab/programmer-calculator 2021-06-22 17:12:33 +02:00
Chad Jablonski
11b44aaa11 programmer-calculator: init at 2.1 2021-06-22 10:03:56 -04:00
Sandro
5f3ebbc661
Merge pull request #123242 from xworld21/eukleides-texlive-deps-instead-of-buildinputs 2021-06-21 11:57:06 +02:00
Vincenzo Mantova
b0c6bd9211 eukleides: depend on texinfo4 instead of overriding texinfo 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
b88e8d999c eukleides: allow PostScript transparency 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
8fb57a90eb eukleides: add getopt in euktoeps wrapper 2021-06-21 08:17:11 +01:00
Vincenzo Mantova
190ba6ee72 eukleides: specify texlive dependencies instead of buildInputs 2021-06-20 20:17:22 +01:00
Axel Forsman
d8984f8522
gurobi: 8.1.0 -> 9.1.2 (#120525) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-06-18 10:43:39 +02:00
AndersonTorres
e9e5f5f84d Change all alsaLib references to alsa-lib 2021-06-10 01:12:49 -03:00
FliegendeWurst
09127f1415 mathematica: 12.2.0 -> 12.3.0 2021-06-05 11:32:04 +02:00
Stephen Morgan
f12d58f223 geogebra6: 6-0-631-0 -> 6-0-644-0 2021-06-04 23:49:04 +10:00
Stephen Morgan
b6f4313e4a geogebra: 5-0-620-0 -> 5-0-644-0 2021-06-04 23:48:27 +10:00
Mauricio Collares
2c7d2ce295 sageWithDoc: fix documentation symlinks 2021-05-30 13:51:15 -03:00
Mauricio Collares
22c86a0466 sageWithDoc: fix static asset deduplication 2021-05-20 18:29:02 -07:00
Mauricio Collares
874d1aba74 sageWithDoc: update sagedoc.py test for sphinx 3.5 2021-05-20 18:29:02 -07:00
Mauricio Collares
cd9e8e284c sage: fix deprecation warning from matplotlib upgrade 2021-05-20 18:29:02 -07:00
Pavol Rusnak
f7ed00be13
Merge pull request #123689 from prusnak/bcal 
bcal: cleanup package, enable aarch64-darwin build
 2021-05-19 17:47:35 +02:00
Pavol Rusnak
6996896b48
bcal: cleanup package, enable aarch64-darwin build 2021-05-19 16:36:17 +02:00
Timo Kaufmann
6cf6470429
Merge pull request #122624 from collares/pari-2.13 
pari: 2.11.4 -> 2.13.1, update sage test expectations
 2021-05-19 16:07:15 +02:00
Erik Bäckman
5b143ccc91
numworks-epsilon: 15.3.2 -> 15.5.0 (#122760) 
Co-authored-by: erikbackman <erikbackman@users.noreply.github.com>
 2021-05-17 19:16:51 +02:00
Austin Butler
66201e2c1d cntk: fix build 2021-05-16 20:03:06 -07:00
github-actions[bot]
8c6d819143
Merge master into staging-next 2021-05-16 18:32:41 +00:00
Jan Tojnar
684991c696
Merge branch 'master' into staging-next 
- Thunderbird 68 has been dropped on master.
- gccCrossLibcStdenv has been factored out on staging-next in all-packages.nix, while the file has been re-formatted on master.
 2021-05-16 15:34:51 +02:00
Vincenzo Mantova
4ef47f32d7 eukleides: use $CC instead of hardcoded gcc 2021-05-16 12:03:47 +01:00
Stefan Frijters
06e7dc2f43
eukleides: Update license 
See license section in the README.
 2021-05-15 10:18:06 +02:00
Stefan Frijters
30b5330e85
eukleides: Fix build, expose tex package 2021-05-15 10:18:06 +02:00
Mauricio Collares
9847e84d55 pari: 2.11.4 -> 2.13.1, update sage test expectations 2021-05-12 21:21:14 -03:00
github-actions[bot]
d8fb37f470
Merge master into staging-next 2021-05-12 06:21:33 +00:00
Mauricio Collares
b413d3570a sage: 9.3.rc4 -> 9.3 2021-05-11 16:49:32 -03:00
Mauricio Collares
f206ba8ab9 singular: replace local patches by upstream ones 2021-05-11 16:49:10 -03:00
Mauricio Collares
391028eb3a pynac: add more patches, link to sage trac 2021-05-11 16:49:10 -03:00