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524 Commits

Author SHA1 Message Date
Drew Risinger
c13bf84d45 libraries.science.math.scs: 2.0.2 -> 2.1.1 2020-01-31 16:05:05 -05:00
Frederik Rietdijk
dce0ca29d9 Merge master into staging-next 2020-01-28 10:46:13 +01:00
Timo Kaufmann
e39e304638
Merge pull request #78496 from r-ryantm/auto-update/brial 
brial: 1.2.6 -> 1.2.7
 2020-01-26 23:28:02 +01:00
R. RyanTM
2d172e6403 brial: 1.2.6 -> 1.2.7 2020-01-26 02:39:07 +00:00
Timo Kaufmann
d62e410ccd
Merge pull request #78222 from r-ryantm/auto-update/m4ri 
m4ri: 20140914 -> 20200115
 2020-01-22 17:43:44 +01:00
R. RyanTM
813678058f m4ri: 20140914 -> 20200115 2020-01-21 23:46:57 +00:00
R. RyanTM
3937313195 m4rie: 20150908 -> 20200115 2020-01-21 23:24:43 +00:00
Anders Kaseorg
3cd8ce3bce treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH 
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted.  (See #67234, for
example.)  Fix this throughout the tree.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2020-01-15 09:47:03 +01:00
Niklas Hambüchen
de1e61f34d
Merge pull request #77104 from r-ryantm/auto-update/htslib 
htslib: 1.9 -> 1.10.2
 2020-01-13 01:51:32 +01:00
Mario Rodas
5ab4676d88
Merge pull request #77194 from r-ryantm/auto-update/primesieve 
primesieve: 7.4 -> 7.5
 2020-01-09 05:02:21 -05:00
R. RyanTM
e28fe589d9 primesieve: 7.4 -> 7.5 2020-01-07 00:22:48 -08:00
R. RyanTM
940d12bf5d htslib: 1.9 -> 1.10.2 2020-01-06 09:16:51 -08:00
Mario Rodas
e11aab8340
Merge pull request #76356 from r-ryantm/auto-update/openlibm 
openlibm: 0.6.0 -> 0.7.0
 2020-01-06 09:58:54 -05:00
Frederik Rietdijk
17ab5f9d88 Merge master into staging-next 2020-01-06 10:38:20 +01:00
Ryan Mulligan
f8cd096aad
Merge pull request #54967 from volhovm/volhovm/clmagma 
clmagma: init at 1.3
 2020-01-05 08:18:12 -08:00
Frederik Rietdijk
828f93a326 Merge master into staging-next 2020-01-05 16:00:21 +01:00
markuskowa
1c55261574
Merge pull request #75526 from robertodr/more-mkl 
Add GNU threading and Fortran libraries to MKL package
 2020-01-04 20:36:43 +01:00
Frederik Rietdijk
867552957f openblas: fix static musl build 2020-01-03 12:50:47 +01:00
Frederik Rietdijk
960c24a996
Merge pull request #75798 from tobim/pkgsStatic/arrow 
arrow-cpp: add pkgsStatic support
 2020-01-03 10:13:31 +01:00
Frederik Rietdijk
f08e3e38d4 Merge master into staging-next 2020-01-02 21:41:13 +01:00
Tobias Mayer
db5d3cdfe2 openblas: partially fix static build 2019-12-31 15:05:13 +01:00
Robin Gloster
313da176d3
treewide: NIX_*_FLAGS -> string 2019-12-31 00:16:46 +01:00
Robin Gloster
5f2b92e3ec
treewide: NIX_*_COMPILE -> string 2019-12-31 00:13:29 +01:00
Robin Gloster
2157dcd141
treewide: installFlags is a list 2019-12-30 13:22:43 +01:00
Merijn Broeren
133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Linus Heckemann
2c19725202 mirtk: enable tbb support for multithreading 2019-12-30 01:16:08 +01:00
R. RyanTM
a2a56df6f8 openlibm: 0.6.0 -> 0.7.0 2019-12-23 20:42:29 -08:00
Roberto Di Remigio
153597a320
mkl: filter static libs in installPhase 2019-12-19 10:23:26 +01:00
Roberto Di Remigio
6cc9bbe2fd
mkl: extract static libraries optionally 2019-12-19 10:12:00 +01:00
Roberto Di Remigio
e0605b3174
mkl: add GNU threading and Fortran libraries 
Signed-off-by: Roberto Di Remigio <roberto.diremigio@gmail.com>
 2019-12-19 10:12:00 +01:00
Timo Kaufmann
135081a538 brial: 1.2.5 -> 1.2.6 
Motivation is mostly https://github.com/BRiAl/BRiAl/pull/37, which is a
pre-requiste for getting the sage tests to pass with python3.
 2019-12-13 20:31:31 +01:00
Mateusz Kowalczyk
1451a52a38 Remove myself (fuuzetsu) from maintainer lists 
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
 2019-12-05 16:29:48 +09:00
Dmitry Kalinkin
aa7efea848
Merge pull request #73958 from markuskowa/upd-lapack 
liblapack: 3.8.0 -> 3.9.0
 2019-11-24 20:06:04 -05:00
John Ericson
d0d5136cce Merge remote-tracking branch 'upstream/master' into wrapper-pname-support 2019-11-24 17:25:07 +00:00
John Ericson
9b090ccbca treewide: Get rid of most parseDrvName without breaking compat 
That is because this commit should be merged to both master and
release-19.09.
 2019-11-24 17:22:28 +00:00
Markus Kowalewski
7e44c6dee6
liblapack: 3.8.0 -> 3.9.0 2019-11-24 11:47:50 +01:00
Markus Kowalewski
8419bb2a20
scalapack: 2.0.2 -> 2.1 2019-11-20 22:44:33 +01:00
Renaud
5411dbda33
Merge pull request #71710 from bcdarwin/fix-elastix 
elastix: 4.9.0 -> 5.0.0 (and mark unbroken)
 2019-11-18 23:23:16 +01:00
Ben Darwin
b618730708 elastix: 4.9.0 -> 5.0.0 (and mark unbroken) 2019-11-18 13:29:02 -05:00
markuskowa
7d728faea5
Merge pull request #73227 from markuskowa/fix-mkl 
mkl: add scalapack libraries to output
 2019-11-18 10:46:33 +01:00
Markus Kowalewski
d817a49faa
mkl: add scalapack libraries to output 2019-11-18 09:05:03 +01:00
Ben Darwin
736860d34b nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
Andreas Rammhold
1e72fa5158
Merge pull request #68954 from dguibert/dg/cudatoolkit_10_1 
cudatoolkit: add 10.1.243
 2019-11-06 08:58:30 +01:00
Benjamin Hipple
fa1e275f31 mkl: 2019.3 -> 2019.5 (#71476) 
Includes bugfixes, new features, and performance improvements.

Full release notes here:
https://software.intel.com/en-us/articles/intel-math-kernel-library-release-notes-and-new-features

Leave Darwin on 2019.3 pending resolution of DMG issues
 2019-10-27 15:34:16 -04:00
Sam Stites
f12199614d magma: use cudatoolkit 2019-10-23 10:57:43 -07:00
markuskowa
f6d7f8ae16
Merge pull request #68927 from danieldk/mkl 
mkl: include pkgconfig files
 2019-10-13 19:16:49 +02:00
Linus Heckemann
5aa4b19946 treewide: mark some broken packages as broken 
Refs:
e6754980264fe927320d5ff2dbd24ca4fac9a160
1e9cc5b9844ef603fe160e9f671178f96200774f
793a2fe1e8bb886ca2096c5904e1193dc3268b6d
c19cf65261639f749012454932a532aa7c681e4b
f6544d618f30fae0bc4798c4387a8c7c9c047a7c
 2019-10-08 17:14:26 +02:00
Orivej Desh
2455b2e309 or-tools: 7.0 -> 7.3 2019-10-04 05:17:48 +00:00
Nikolay Amiantov
1c429acbff tensorflow: add OpenGL path to find libcudart 2019-10-02 10:33:31 +03:00
Timo Kaufmann
7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9 
sage: 8.8 -> 8.9
 2019-09-30 11:13:46 +00:00