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2187 Commits

Author SHA1 Message Date
Markus J. Ankenbrand
bf05da0967 hmmer: 3.1b2 -> 3.2.1 (#50284) 
This version was released in June 2018 and has many bug fixes
and improvements compared to the previous version from 2015.
See: https://cryptogenomicon.org/2018/06/07/hmmer-3-2-release/
 2018-11-13 15:43:44 +01:00
Peter Simons
22a802584f
Merge pull request #50179 from Thra11/r-without-jdk 
R: Remove jdk dependency on aarch32/64
 2018-11-12 12:42:39 +01:00
Tom Hall
b51018ed2e R: Remove jdk dependency on aarch32/64 
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
 2018-11-10 20:53:26 +00:00
R. RyanTM
2fd0c31673 calc: 2.12.6.8 -> 2.12.7.1 (#50173) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
 2018-11-10 15:32:06 +01:00
Gabriel Ebner
698ad2dd4d nasc: 0.5.0 -> 0.5.1 2018-11-10 14:18:31 +01:00
Gabriel Ebner
5f2a7607fa qalculate-gtk: 2.6.2 -> 2.8.1 2018-11-10 13:17:17 +01:00
Timo Kaufmann
ea8d794026
Merge pull request #50092 from r-ryantm/auto-update/jmol 
jmol: 14.29.26 -> 14.29.28
 2018-11-10 10:13:35 +01:00
R. RyanTM
37f01d5bf8 igv: 2.4.14 -> 2.4.15 (#50087) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
 2018-11-09 22:42:04 -05:00
R. RyanTM
3902a47bed jmol: 14.29.26 -> 14.29.28 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2018-11-09 16:17:35 -08:00
Jörg Thalheim
c44e7b2e1c
Merge pull request #50024 from r-ryantm/auto-update/ngspice 
ngspice: 28 -> 29
 2018-11-09 14:35:44 +00:00
R. RyanTM
791286efd9 ngspice: 28 -> 29 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ngspice/versions
 2018-11-09 06:07:46 -08:00
Renaud
5810df24a7
Merge pull request #49834 from smaret/gildas-update 
gildas: 20181001_b -> 20181101_a
 2018-11-09 10:20:32 +01:00
Gabriel Ebner
155595b0c7 eprover: 2.1 -> 2.2 2018-11-07 22:33:25 +01:00
Timo Kaufmann
efe6322ce4 pythonPackages.networkx: 2.1 -> 2.2 2018-11-07 20:15:37 +01:00
Timo Kaufmann
72e6e792f6 sage: add fetchSageDiff utility function 2018-11-07 20:15:37 +01:00
Sebastien Maret
1048a7349e gildas: 20181001_b -> 20181101_a 2018-11-06 17:00:10 +01:00
Jörg Thalheim
b3ed2b4c18
Merge pull request #49728 from vbgl/acgtk-1.5.0 
acgtk: 1.3.1 -> 1.5.0
 2018-11-04 17:09:34 +00:00
Théo Zimmermann
dd21f83950 coq_8_9: init at 8.9+beta1 2018-11-04 07:26:29 +00:00
Vincent Laporte
08ac103970
acgtk: 1.3.1 -> 1.5.0 2018-11-04 06:29:27 +00:00
Renaud
848f2f3d0d
Merge pull request #49559 from ikarulus/librepcb 
bump version librepcb-unstable: 2018-06-28 -> 2018-10-31
 2018-11-03 14:38:39 +01:00
Ikarulus
f5af5b19f4 librepcb-unstable: 2018-06-28 -> 2018-10-31 2018-11-03 13:01:41 +01:00
Kevin Quick
411c665f33
yices: 2.6.0 -> 2.6.1 2018-11-02 15:49:09 -07:00
Jan Tojnar
3493f44727
Merge pull request #49560 from worldofpeace/eos-third-update 
update some elementary thirdparty apps
 2018-11-02 21:29:57 +01:00
worldofpeace
0a2420bccd nasc: 0.4.7 -> 0.5.0 2018-11-02 16:01:05 -04:00
Michael Raskin
722476273c
Merge pull request #49547 from fadenb/simgrid_3.21 
simgrid: 3.20 -> 3.21
 2018-11-02 14:22:47 +00:00
Tristan Helmich (omniIT)
4f8cac02c6 simgrid: 3.20 -> 3.21 2018-11-02 14:23:39 +01:00
ikarulus
7bd8805408 kicad 5.0.0 -> 5.0.1 (#49561) 2018-11-02 10:32:32 +01:00
Gabriel Ebner
5de50f8fa3
Merge pull request #49250 from royneary/nim-0.19 
nim: 0.18.0 -> 0.19.0
 2018-11-02 10:20:13 +01:00
Will Dietz
c417342cd2
Merge pull request #48579 from dtzWill/update/z3-4.8.1 
z3: 4.7.1 -> 4.8.1
 2018-11-02 04:02:24 -05:00
royneary
bb2bae6986 mosdeph: fix compilation with nim 0.19 2018-10-31 22:03:27 +01:00
Jörg Thalheim
8df0ca2bbc
coq_8_4: remove 
verasco was its only user
 2018-10-30 13:31:11 +00:00
Timo Kaufmann
2513747356 sage: fix attrname 
This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
 2018-10-27 14:18:08 +02:00
Timo Kaufmann
7970a5a475
Merge pull request #49225 from timokau/arb-2.15.1 
arb: 2.14.0 -> 2.15.1
 2018-10-27 12:36:51 +02:00
Timo Kaufmann
fbea2cd77a arb: 2.14.0 -> 2.15.1 2018-10-27 11:27:03 +02:00
Joachim F
b6a5cd8970
Merge pull request #48812 from mpickering/cedille 
cedille bug fixes
 2018-10-24 15:29:47 +00:00
R. RyanTM
c759273e2e star: 2.6.1a -> 2.6.1c 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
 2018-10-24 15:22:22 +02:00
Timo Kaufmann
db75fe7313 sage: fix doctest 
The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
 2018-10-22 14:52:19 +02:00
Matthew Pickering
08e5ef20d8 cedille: Make a seperate output for the base library 
For now, for normal usage you need to add `${cedille.lib}` to
the `~/.cedille/options` file so that cedille will find the base
libraries. There is no option to pass options by the command line.
 2018-10-22 08:43:07 +00:00
Matthew Pickering
f7d4bc2c71 cedille: Apply patch which unbreaks the options file 
See https://github.com/cedille/cedille/issues/29
 2018-10-22 08:42:01 +00:00
Timo Kaufmann
b39142cd1f sage: fix dochtml tests 2018-10-21 19:17:07 +02:00
Timo Kaufmann
38c2be5ffe sage: fix docbuild 
This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
 2018-10-21 14:16:06 +02:00
Timo Kaufmann
a413dedde1
Merge pull request #44527 from timokau/sage-8.4 
[WIP] sage: 8.3 -> 8.4
 2018-10-20 01:34:34 +02:00
Vincent Laporte
c091e93b99
Merge pull request #48617 from Zimmi48/passthru-ocamlPackages-in-coq-package 
coq: add ocamlPackages in passthru
 2018-10-19 09:38:07 +00:00
Jörg Thalheim
a595b872c8
Merge pull request #48509 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.94 -> 3.3.95
 2018-10-19 09:29:23 +01:00
Jörg Thalheim
02405cfe83
Merge pull request #48565 from rprospero/sasview-4.2.0 
Sasview: unstable -> 4.2.0
 2018-10-18 21:44:25 +01:00
Jörg Thalheim
84890ac196
Merge pull request #48653 from vbgl/why3-1.1.0 
why3: 1.0.0 -> 1.1.0
 2018-10-18 18:55:10 +01:00
Timo Kaufmann
7ca1c31dfa sage: 8.4.rc1 -> 8.4 2018-10-18 09:58:36 +02:00
Vincent Laporte
bc8d25c1ef
why3: 1.0.0 -> 1.1.0 2018-10-18 05:43:36 +00:00
Jörg Thalheim
4057f2107a
Merge pull request #48511 from r-ryantm/auto-update/gmsh 
gmsh: 4.0.1 -> 4.0.2
 2018-10-17 16:02:01 +01:00
Adam Washington
6be90bf8d7
sasmodels: unstable -> 4.2.0 2018-10-17 14:36:46 +01:00