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2870 Commits

Author SHA1 Message Date
Timo Kaufmann
e7d4386e0e sage: 8.8.rc1 -> 8.8.rc2 2019-06-27 22:03:00 +02:00
Timo Kaufmann
218fd843a3 sage: 8.8.rc0 -> 8.8.rc1 2019-06-27 22:03:00 +02:00
Timo Kaufmann
409bee28b6 sage: 8.8.beta7 -> 8.8.rc0 2019-06-27 22:03:00 +02:00
Timo Kaufmann
c76e8fa86e sage: 8.8.beta6 -> 8.8.beta7 2019-06-27 22:02:57 +02:00
Timo Kaufmann
9f434d7080 sage: 8.8.beta5 -> 8.8.beta6 2019-06-27 22:01:40 +02:00
Timo Kaufmann
325a5037bf sage: 8.8.beta4 -> 8.8.beta5 2019-06-27 22:01:37 +02:00
Timo Kaufmann
240d4c31d2 sage: 8.8.beta3 -> 8.8.beta4 2019-06-27 21:57:33 +02:00
Timo Kaufmann
608948e3e9 sage: 8.8.beta2 -> 8.8.beta3 2019-06-27 21:57:33 +02:00
Timo Kaufmann
21c1ab6776 sage: 8.7 -> 8.8.beta2 2019-06-27 21:57:27 +02:00
markuskowa
a07d045b00
Merge pull request #63488 from jbedo/octopus 
octopus: init 0.6.3-beta
 2019-06-27 12:43:25 +02:00
Dmitry Kalinkin
bff22431b5
Merge pull request #62845 from royneary/nim-0.20.0 
nim: 0.19.4 -> 0.20.0
 2019-06-26 13:00:50 -04:00
Nikolay Amiantov
3dd7d72e43 fast-downward: init at 2019-05-13 2019-06-24 15:59:57 +03:00
Nikolay Amiantov
a92611508f cplex: add library info 2019-06-24 15:57:22 +03:00
Nikolay Amiantov
10e1475a79 gurobi: add library suffix 2019-06-24 15:57:22 +03:00
R. RyanTM
3e6ef3e9ef eagle: 9.3.2 -> 9.4.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
 2019-06-23 14:57:04 +02:00
royneary
d162165350
mosdepth: 0.2.3 -> 0.2.6 2019-06-22 22:41:59 +02:00
Timo Kaufmann
ac28607a03
Merge pull request #63560 from timokau/sage-threejs-r105 
sage: fix threejs r105
 2019-06-20 14:55:13 +02:00
markuskowa
3947441cb9
Merge pull request #63262 from r-ryantm/auto-update/gromacs 
gromacs: 2019.2 -> 2019.3
 2019-06-20 14:26:02 +02:00
Timo Kaufmann
9955657209 sage: fix online threejs 2019-06-20 12:50:00 +02:00
Timo Kaufmann
2d78d928cd sage: backport threejs r100 compatibility 
https://github.com/NixOS/nixpkgs/issues/62736#issuecomment-503757429
 2019-06-20 12:50:00 +02:00
Justin Bedo
b8b71aaaf9
octopus: init 0.6.3-beta 2019-06-19 23:09:33 +10:00
Linus Heckemann
32a992af8b
Merge pull request #63479 from lheckemann/dcm2niix 
dcm2niix: 1.0.20170130 -> 1.0.20190410
 2019-06-19 12:05:37 +02:00
Vincent Laporte
1f2a3a2df2 gappa: 1.2 -> 1.3.5 2019-06-19 09:24:34 +00:00
Linus Heckemann
2458209c3e dcm2niix: 1.0.20170130 -> 1.0.20190410 2019-06-18 22:12:40 +02:00
Timo Kaufmann
6e74109b13
sage: fix threejs integration (#63375) 
Before this it didn't find the correct files. Unfortunately, the
interactive parts of sage are hard to test automatically.
 2019-06-18 11:50:41 +02:00
R. RyanTM
3775ef0acd jmol: 14.29.42 -> 14.29.46 (#63277) 
Semi-automatic update generated by
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based on information from
https://repology.org/metapackage/jmol/versions
 2019-06-17 20:56:11 +02:00
Justin Bedo
1be8ba08d3
strelka: 2.9.5 -> 2.9.10 2019-06-17 16:09:25 +10:00
R. RyanTM
0c54098340 gromacs: 2019.2 -> 2019.3 
Semi-automatic update generated by
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based on information from
https://repology.org/metapackage/gromacs/versions
 2019-06-16 18:22:05 -07:00
volth
f3282c8d1e treewide: remove unused variables (#63177) 
* treewide: remove unused variables

* making ofborg happy
 2019-06-16 19:59:05 +00:00
Aaron Andersen
4cb64dba39
Merge pull request #58362 from bzizou/cd-hit 
cd-hit: init at 4.8.1
 2019-06-13 20:39:54 -04:00
Bruno Bzeznik
9fbf8625f1 cd-hit: init at 4.8.1 2019-06-13 14:35:13 +02:00
markuskowa
ca099915f7
Merge pull request #62976 from markuskowa/upd-octopus 
octopus: 8.4 -> 9.0
 2019-06-12 09:36:42 +02:00
Markus Kowalewski
4df1e91b31
octopus: 8.4 -> 9.0 2019-06-11 13:02:54 +02:00
Will Dietz
e397f4716c z3: 4.8.4 -> 4.8.5 
* drop included patch
* pname-ify
 2019-06-10 17:55:26 -07:00
Will Dietz
94774dad00 pulseview: 0.4.0 -> 0.4.1 
https://sigrok.org/gitweb/?p=pulseview.git;a=blob;f=NEWS;h=69c7ac5d418bbae896906b8c6b64c6719b1912db;hb=05a4de8abd5810cf8219077259ffa44adb08043e
 2019-06-10 23:20:24 +02:00
Robert Scott
48c8756157 pythonPackages.neuron: restrict to x86 platforms 2019-06-09 12:18:58 +02:00
Robert Scott
e0aec554eb pythonPackages.neuron: fix for darwin 
un-compensate for some of the darwin quirks the neuron
source is expecting
 2019-06-09 12:18:58 +02:00
R. RyanTM
5bbc9be100 gmsh: 4.2.3 -> 4.3.0 (#62420) 
* gmsh: 4.2.3 -> 4.3.0

Semi-automatic update generated by
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based on information from
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* gmsh: move cmake to nativeBuildInputs
 2019-06-07 18:01:57 +02:00
R. RyanTM
8ebf0eefbe star: 2.7.0f -> 2.7.1a (#62577) 
* star: 2.7.0f -> 2.7.1a

Semi-automatic update generated by
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* star: cleanup
 2019-06-06 18:10:34 +02:00
Matthew Bauer
d598eca41e
Merge pull request #62752 from matthewbauer/darwin-fixes100 
Fixes for x86_64-darwin failures on Hydra
 2019-06-06 09:46:41 -04:00
Matthew Bauer
441485af66 iv: only use patchelf on linux 2019-06-05 23:42:58 -04:00
Matthew Bauer
693a4efa4c
Merge pull request #53013 from wucke13/betaflight-configurator-naive 
betaflight-configurator: init at 10.5.1
 2019-06-05 10:08:29 -04:00
worldofpeace
1d66d62bbc
Merge pull request #62430 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.100 -> 3.3.101
 2019-06-04 23:12:58 -04:00
Renaud
e7e1ae542c
Merge pull request #62499 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.19.2 -> 2.20.2
 2019-06-05 00:05:59 +02:00
R. RyanTM
df3cdc29be quantum-espresso: 6.4 -> 6.4.1 (#62556) 2019-06-04 19:24:04 +00:00
Sébastien Maret
39a3ad3dce
gildas: 20190501_a -> 20190601_b 2019-06-03 21:07:00 +02:00
Nikolay Amiantov
1deb406ac2 mxnet: 1.2.1 -> 1.4.1 2019-06-02 21:50:06 +03:00
Nikolay Amiantov
1260b05279 cntk: 2.4 -> 2.7 
Restrict platforms to x86_64-linux.
 2019-06-02 19:40:49 +03:00
R. RyanTM
2998ac28b4 picard-tools: 2.19.2 -> 2.20.2 
Semi-automatic update generated by
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based on information from
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 2019-06-02 05:31:59 -07:00
markuskowa
5e45835011
Merge pull request #62448 from r-ryantm/auto-update/jmol 
jmol: 14.29.40 -> 14.29.42
 2019-06-02 11:46:45 +02:00
R. RyanTM
e20c69619f jmol: 14.29.40 -> 14.29.42 
Semi-automatic update generated by
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based on information from
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 2019-06-01 17:19:25 -07:00
R. RyanTM
62e667f6ab gtkwave: 3.3.100 -> 3.3.101 
Semi-automatic update generated by
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based on information from
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 2019-06-01 13:31:03 -07:00
worldofpeace
b33513d237
Merge pull request #62378 from r-ryantm/auto-update/clp 
clp: 1.17.1 -> 1.17.2
 2019-06-01 12:10:36 -04:00
worldofpeace
62c68b8a72
clp: update homepage 2019-06-01 12:08:20 -04:00
R. RyanTM
6f2d2818b0 cryptoverif: 2.00 -> 2.01 
Semi-automatic update generated by
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based on information from
https://repology.org/metapackage/cryptoverif/versions
 2019-06-01 10:51:25 -05:00
Alyssa Ross
062210bdff treewide: update cargoSha256 hashes for cargo-vendor upgrade 
A recent upgrade of cargo-vendor changed its output slightly, which
broke all cargoSha256 hashes in nixpkgs.
See https://github.com/NixOS/nixpkgs/issues/60668 for more information.

Since then, a few hashes have been fixed in master by hand, but there
were a lot still to do, so I did all of the ones left over with some
scripts I wrote.

The one hash I wasn’t able to update was habitat's, because it’s
currently broken and the build doesn’t get far enough to produce a
hash anyway.
 2019-06-01 15:17:52 +00:00
R. RyanTM
332c600f7d clp: 1.17.1 -> 1.17.2 
Semi-automatic update generated by
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based on information from
https://repology.org/metapackage/clp/versions
 2019-06-01 04:05:51 -07:00
wucke13
fd121cdd88 Added makeWrapper suggestion 2019-05-31 12:51:51 +02:00
wucke13
db3a1d8adb Update pkgs/applications/science/robotics/betaflight-configurator/default.nix 
Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>
 2019-05-31 12:51:51 +02:00
wucke13
5fcf9f5559 Update pkgs/applications/science/robotics/betaflight-configurator/default.nix 
Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>
 2019-05-31 12:51:51 +02:00
wucke13
170009b123 betaflight-configurator: init at 10.5.1 2019-05-31 12:51:51 +02:00
Vincent Laporte
57c3da07eb coq_8_9: 8.9.0 -> 8.9.1 2019-05-29 11:24:45 +02:00
Will Dietz
368f870219
libqalculate,qalculate-gtk: 3.1.0 -> 3.2.0 2019-05-28 19:14:03 -05:00
Jörg Thalheim
10ddd34921
verilator: 4.012 -> 4.014 (#62013) 
verilator: 4.012 -> 4.014
 2019-05-25 09:16:58 +01:00
Dmitry Kalinkin
785204f5a1
Merge pull request #61895 from smaret/gildas-update 
gildas: 20190401_a -> 20190501_a
 2019-05-24 17:48:25 -04:00
R. RyanTM
66b4fd678c verilator: 4.012 -> 4.014 
Semi-automatic update generated by
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 2019-05-24 09:19:04 -07:00
Renaud
70a494a486
Merge pull request #61798 from bobvanderlinden/aliza-1.48.10 
aliza: 1.36.3 -> 1.48.10
 2019-05-24 17:23:51 +02:00
Ryan Mulligan
34e8f3b119
Merge pull request #61997 from r-ryantm/auto-update/stacks 
stacks: 2.3e -> 2.4
 2019-05-24 06:31:43 -07:00
R. RyanTM
f4a20199d2 stacks: 2.3e -> 2.4 
Semi-automatic update generated by
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based on information from
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 2019-05-24 03:50:06 -07:00
Sébastien Maret
cadd88967f
gildas: 20190401_a -> 20190501_a 2019-05-24 08:11:21 +02:00
Gabriel Ebner
cca0aeeb68 spyder: convert to python modules 2019-05-21 18:23:07 +02:00
Bob van der Linden
c8571f6a2c
aliza: ? -> 1.48.10 2019-05-21 11:31:38 +02:00
Cyril Cohen
d16a78b512 several fixes in coq and coqPackages.mathcomp (and extras) 2019-05-21 08:55:38 +02:00
markuskowa
82ea400e46
Merge pull request #61630 from markuskowa/upd-molden 
molden: 5.9.5 -> 6.1
 2019-05-18 20:13:57 +02:00
Robin Gloster
43aa2e30c3
Merge pull request #58369 from bzizou/clustalo 
clustal-omega: init at 1.2.4
 2019-05-18 10:16:43 +00:00
Robin Gloster
6cf583cf2f
Merge pull request #60406 from JohnAZoidberg/remove-isnull 
treewide: Remove usage of isNull
 2019-05-18 09:36:24 +00:00
Markus Kowalewski
dce18eefd1
molden: 5.9.5 -> 6.1 2019-05-17 13:07:53 +02:00
Aaron Andersen
8b3350cf15
Merge pull request #61462 from mpoquet/simgrid-3.21-to-3.22.2 
simgrid: 3.21 -> 3.22.2
 2019-05-16 12:04:44 -04:00
Will Dietz
51202e96fa
nasc: 0.5.2 -> 0.5.4 
https://github.com/parnold-x/nasc/releases/tag/0.5.4
https://github.com/parnold-x/nasc/releases/tag/0.5.3
 2019-05-15 16:59:26 -05:00
Millian Poquet
13aa449bab simgrid: remove unneeded 'name' definition 2019-05-15 12:35:12 +02:00
Vincent Laporte
b72daf7117 coq: init at 8.10+β1 2019-05-15 10:30:03 +02:00
Vincent Laporte
1ce94fad33 coq: make “coq-version” more general 2019-05-15 10:30:03 +02:00
Millian Poquet
00fc5bd08f simgrid: override checkPhase -> preCheck 
This commit changes how failing tests are ignored.
- Previously, the whole checkPhase was overridden.
- Now, preCheck generates a ctest ignore file.

ctest doc: https://gitlab.kitware.com/cmake/community/wikis/doc/ctest/Testing-With-CTest#customizing-ctest
 2019-05-14 18:27:51 +02:00
Millian Poquet
aa29b79e8a simgrid: fetchgit -> fetchFromGitLab 2019-05-13 21:26:09 +02:00
Millian Poquet
c7ab2b9499 simgrid: 3.21 -> 3.22.2 
- GitHub -> Framagit (SimGrid main repo has moved)
- Test binaries must now be explicitly compiled (`make tests`)
- Fix broken documentation link
 2019-05-13 18:58:27 +02:00
Timo Kaufmann
ecfc35e9a6
pynac: 0.7.24 -> 0.7.25 (#61458) 2019-05-13 17:11:13 +02:00
Renaud
bf4728cb40
eggnog-mapper: fix patch URL and hash 2019-05-13 16:00:07 +02:00
R. RyanTM
af6a39460a cbc: 2.9.9 -> 2.10.2 (#58016) 
* cbc: 2.9.9 -> 2.10.0
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cbc/versions

* cbc: 2.10.0 -> 2.10.2
+ mark as broken on aarch64 (fails to build)
 2019-05-12 23:46:18 +02:00
Sebastien Bourdeauducq
992150d37b symbiyosys: fix path to bash 2019-05-12 20:00:10 +02:00
Renaud
d081baa4a5
Merge pull request #61335 from r-ryantm/auto-update/minimap2 
minimap2: 2.16 -> 2.17
 2019-05-12 17:27:28 +02:00
R. RyanTM
ad5676f8b9 minimap2: 2.16 -> 2.17 
Semi-automatic update generated by
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based on information from
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 2019-05-11 21:12:42 -07:00
wucke13
a670a8dbb1 apmplanner-2: 2.0.26 -> 2.0.27-rc1 2019-05-11 19:15:10 +02:00
Timo Kaufmann
3814d7b14a
givaro: 4.0.4 -> 4.1.0, fflas-ffpack: 2.3.2 -> 2.4.0, linbox: 1.5.2 -> 1.6.0 (#61285) 
The three packages are interdependent and need to be updated together,
like the main contributor did for sage:

https://trac.sagemath.org/ticket/24214
 2019-05-11 16:09:07 +02:00
Michael Raskin
7252364dfa tptp: switch to new base URL for source tarball 2019-05-09 22:57:59 +02:00
Michael Raskin
a8c4b37063 vampire: switch off the fragile fetchSubmodules/leaveDotGit 2019-05-09 22:57:59 +02:00
Renaud
2fb1b3156f
Merge pull request #60932 from c0bw3b/patches-cleanup 
[treewide] delete (some) unused patches
 2019-05-07 23:34:04 +02:00
Frederik Rietdijk
a80982b4c9
Merge staging-next into master 2019-05-07 19:29:06 +02:00
Frederik Rietdijk
0196d8f11c Merge master into staging-next 2019-05-07 09:00:06 +02:00
Mario Rodas
e47dd1bb34
cedille: fix hash 2019-05-05 20:47:29 -05:00
Michael Raskin
7770495cd7
Merge pull request #59148 from volth/gcc.arch.v3 
compilation for particular x86_64 architecture
 2019-05-05 19:12:12 +00:00
Daniël de Kok
f029f8c5ad fasttext: init at 0.2.0 2019-05-05 08:28:44 +02:00
c0bw3b
9cb260d091 [treewide] delete unused patches 2019-05-04 19:52:24 +02:00
Frederik Rietdijk
155c9d8e18 Merge master into staging-next 2019-05-02 08:43:14 +02:00
Renaud
2f76c9b7e8
Merge pull request #60694 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.19.0 -> 2.19.2
 2019-05-02 08:06:35 +02:00
R. RyanTM
d41da19c65 picard-tools: 2.19.0 -> 2.19.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
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 2019-05-01 17:49:08 -07:00
Gabriel Ebner
ebbeae56bd
kicad: 5.0.2 -> 5.1.2 (#60611) 
kicad: 5.0.2 -> 5.1.2
 2019-05-01 12:21:02 +02:00
Frederik Rietdijk
f137783927 Merge master into staging-next 2019-05-01 11:45:46 +02:00
R. RyanTM
cc82f81d9a bowtie2: 2.3.5 -> 2.3.5.1 
Semi-automatic update generated by
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based on information from
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 2019-05-01 11:17:16 +02:00
R. RyanTM
dbfdaf048a gromacs: 2019.1 -> 2019.2 
Semi-automatic update generated by
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based on information from
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 2019-05-01 11:14:16 +02:00
Gabriel Ebner
9370c1afdb kicad: 5.0.2 -> 5.1.2 2019-05-01 11:13:14 +02:00
R. RyanTM
06aa3d6f60 jmol: 14.29.36 -> 14.29.40 
Semi-automatic update generated by
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 2019-05-01 11:10:18 +02:00
Gabriel Ebner
e62576817f Merge branch 'auto-update/libqalculate' 2019-05-01 10:28:38 +02:00
Gabriel Ebner
1d5a0ffbfc qalculate-gtk: 3.0.0 -> 3.1.0 2019-05-01 10:28:04 +02:00
Ryan Mulligan
14965968bd
Merge pull request #60550 from r-ryantm/auto-update/ginac 
ginac: 1.7.5 -> 1.7.6
 2019-04-30 19:27:22 -07:00
R. RyanTM
1d663a6b2e ginac: 1.7.5 -> 1.7.6 
Semi-automatic update generated by
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based on information from
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 2019-04-30 15:56:23 -07:00
Michael Raskin
9d807a768a
Merge pull request #60520 from r-ryantm/auto-update/eprover 
eprover: 2.2 -> 2.3
 2019-04-30 19:16:59 +00:00
R. RyanTM
62cd9ccca4 eprover: 2.2 -> 2.3 
Semi-automatic update generated by
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 2019-04-30 10:05:27 -07:00
Gabriel Ebner
a35df16d5f
kicad: fix #49089 by adding libraries files (#57452) 
kicad: fix #49089 by adding libraries files
 2019-04-30 17:38:16 +02:00
volth
5ad79dc4bb compilation for particular x86_64 architecture 2019-04-30 14:28:04 +00:00
Matthew Bauer
a3990c9f6d
Merge pull request #60447 from matthewbauer/macos-10-12-fixups 
Fixup from macos-10-12 branch
 2019-04-30 10:06:45 -04:00
Frederik Rietdijk
3462fe27d9 Merge staging-next into staging 2019-04-30 15:52:19 +02:00
Matthew Bauer
74c784a79c treewide: make -Wno-error flags clang-only 
In 724e833ea2, I was a little too aggressive in enabling these flags.
Many don’t work in gcc, and we should probably avoid settings them
widely. This makes those flags optional on isclang
 2019-04-29 21:34:24 -04:00
Mario Rodas
7a965dcdab cedille: 1.0.0 -> 1.1.1 (#60307) 2019-04-29 21:02:44 +02:00
Daniel Schaefer
786f02f7a4 treewide: Remove usage of isNull 
isNull "is deprecated; just write e == null instead" says the Nix manual
 2019-04-29 14:05:50 +02:00
Timo Kaufmann
6dabc28cd0 sage: add compatibility for R 3.6.0 
The random number generator seems to have changed. Because of this, a
trivial test adjustment is needed.
 2019-04-29 13:37:07 +02:00
Alex Branham
4264ad4c2b R: 3.5.3 -> 3.6.0 
The patch is necessary for the test suite to pass without errors. The
fix has already been made upstream but didn't make it into the 3.6.0
release.

Closes https://github.com/NixOS/nixpkgs/pull/60273.
 2019-04-29 13:35:21 +02:00
Bruno Bzeznik
83886b3d91 aragorn: init at 1.2.38 (#58354) 2019-04-29 07:18:03 -04:00
Ben
535c38dd73 GeoGebra: 472 -> 535 (#60272) 
* Update GeoGebra

* Update default.nix
 2019-04-29 11:25:37 +02:00
Timo Kaufmann
31709b611f R: add timokau as a maintainer 
I'm interested in R as a dependency for sage. R changes are likely to
impact sage, so I'd like to get notified on those changes.
 2019-04-28 13:20:47 +02:00
Matthew Bauer
87944c3125
Merge pull request #56744 from matthewbauer/macos-10-12 
Update macOS to 10.12
 2019-04-26 22:20:03 -04:00
Matthew Bauer
724e833ea2 treewide: disable -Werror for llvm 7 
Some of these have errors on newest llvm. It’s easiest to just add
-Wno-error in these cases.
 2019-04-26 21:55:04 -04:00
Renaud
5560607988
Merge pull request #59484 from r-ryantm/auto-update/eagle 
eagle: 9.3.1 -> 9.3.2
 2019-04-25 23:32:25 +02:00
Renaud
71c6157fd7
Merge pull request #58534 from bzizou/sumatools.dev 
sumatools: init at 1.0.34
 2019-04-24 22:34:35 +02:00
Renaud
9f26d537e8
Merge pull request #59516 from r-ryantm/auto-update/gmsh 
gmsh: 4.2.2 -> 4.2.3
 2019-04-24 20:40:56 +02:00
worldofpeace
c8c0bd1fea
Merge pull request #51285 from expipiplus1/fped 
fped: init at unstable-2017-05-11
 2019-04-23 06:52:50 -04:00
markuskowa
d0e70ac2d3
Merge pull request #60010 from JohnAZoidberg/https-urls 
HTTPS urls
 2019-04-22 23:37:07 +02:00
Austin Seipp
b0fea1dc9c
verilog: 2018.12.15 -> 2019.03.27, parallel build 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2019-04-22 14:27:45 -05:00
Austin Seipp
fe8eb566b5
symbiyosys: 2019.03.28 -> 2019.04.18 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2019-04-22 14:27:45 -05:00
Daniel Schaefer
bac4d95aa2 treewide: Change URLs to HTTPS 
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
 2019-04-22 10:19:54 +02:00
Timo Kaufmann
512097dece
Merge pull request #59921 from timokau/gap-update 
gap: 4.10.0 -> 4.10.1
 2019-04-20 13:17:04 +02:00
R. RyanTM
0dc3184871 picard-tools: 2.18.27 -> 2.19.0 (#59634) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-04-20 13:15:40 +02:00
Timo Kaufmann
9c7f774a39 gap: mark as broken on darwin 
Has been failing to build for a while.
 2019-04-20 12:36:11 +02:00
Timo Kaufmann
af6739fdd7 gap: 4.10.0 -> 4.10.1 2019-04-20 09:54:27 +02:00
Aaron Andersen
77dbfa3a55
Merge pull request #53803 from jfrankenau/init-groove 
groove: init at 5.7.4
 2019-04-19 20:27:18 -04:00
Aaron Andersen
11cf1a282d
Merge pull request #58377 from bzizou/exonerate 
exonerate: init at 2.4.0
 2019-04-19 13:25:49 -04:00
Mario Rodas
f84a7b3828
Merge pull request #59834 from luispedro/add_prodigal 
Prodigal: init at 2.6.3
 2019-04-19 09:50:03 -05:00
Bruno Bzeznik
6a8c9bff8f exonerate: init at 2.4.0 2019-04-19 14:58:57 +02:00
Bruno Bzeznik
90b4796c60 sumatools: init at 1.0.34 2019-04-19 14:43:40 +02:00
Johannes Frankenau
e7f021ca93 groove: init at 5.7.4 2019-04-19 13:34:30 +02:00
Luis Pedro Coelho
3fc55eec05 Prodigal: init at 2.6.3 2019-04-19 08:38:14 +02:00