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2729 Commits

Author SHA1 Message Date
wucke13
a670a8dbb1 apmplanner-2: 2.0.26 -> 2.0.27-rc1 2019-05-11 19:15:10 +02:00
Timo Kaufmann
3814d7b14a
givaro: 4.0.4 -> 4.1.0, fflas-ffpack: 2.3.2 -> 2.4.0, linbox: 1.5.2 -> 1.6.0 (#61285) 
The three packages are interdependent and need to be updated together,
like the main contributor did for sage:

https://trac.sagemath.org/ticket/24214
 2019-05-11 16:09:07 +02:00
Michael Raskin
7252364dfa tptp: switch to new base URL for source tarball 2019-05-09 22:57:59 +02:00
Michael Raskin
a8c4b37063 vampire: switch off the fragile fetchSubmodules/leaveDotGit 2019-05-09 22:57:59 +02:00
Renaud
2fb1b3156f
Merge pull request #60932 from c0bw3b/patches-cleanup 
[treewide] delete (some) unused patches
 2019-05-07 23:34:04 +02:00
Frederik Rietdijk
a80982b4c9
Merge staging-next into master 2019-05-07 19:29:06 +02:00
Frederik Rietdijk
0196d8f11c Merge master into staging-next 2019-05-07 09:00:06 +02:00
Mario Rodas
e47dd1bb34
cedille: fix hash 2019-05-05 20:47:29 -05:00
Michael Raskin
7770495cd7
Merge pull request #59148 from volth/gcc.arch.v3 
compilation for particular x86_64 architecture
 2019-05-05 19:12:12 +00:00
Daniël de Kok
f029f8c5ad fasttext: init at 0.2.0 2019-05-05 08:28:44 +02:00
c0bw3b
9cb260d091 [treewide] delete unused patches 2019-05-04 19:52:24 +02:00
Frederik Rietdijk
155c9d8e18 Merge master into staging-next 2019-05-02 08:43:14 +02:00
Renaud
2f76c9b7e8
Merge pull request #60694 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.19.0 -> 2.19.2
 2019-05-02 08:06:35 +02:00
R. RyanTM
d41da19c65 picard-tools: 2.19.0 -> 2.19.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-05-01 17:49:08 -07:00
Gabriel Ebner
ebbeae56bd
kicad: 5.0.2 -> 5.1.2 (#60611) 
kicad: 5.0.2 -> 5.1.2
 2019-05-01 12:21:02 +02:00
Frederik Rietdijk
f137783927 Merge master into staging-next 2019-05-01 11:45:46 +02:00
R. RyanTM
cc82f81d9a bowtie2: 2.3.5 -> 2.3.5.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions
 2019-05-01 11:17:16 +02:00
R. RyanTM
dbfdaf048a gromacs: 2019.1 -> 2019.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
 2019-05-01 11:14:16 +02:00
Gabriel Ebner
9370c1afdb kicad: 5.0.2 -> 5.1.2 2019-05-01 11:13:14 +02:00
R. RyanTM
06aa3d6f60 jmol: 14.29.36 -> 14.29.40 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-05-01 11:10:18 +02:00
Gabriel Ebner
e62576817f Merge branch 'auto-update/libqalculate' 2019-05-01 10:28:38 +02:00
Gabriel Ebner
1d5a0ffbfc qalculate-gtk: 3.0.0 -> 3.1.0 2019-05-01 10:28:04 +02:00
Ryan Mulligan
14965968bd
Merge pull request #60550 from r-ryantm/auto-update/ginac 
ginac: 1.7.5 -> 1.7.6
 2019-04-30 19:27:22 -07:00
R. RyanTM
1d663a6b2e ginac: 1.7.5 -> 1.7.6 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
 2019-04-30 15:56:23 -07:00
Michael Raskin
9d807a768a
Merge pull request #60520 from r-ryantm/auto-update/eprover 
eprover: 2.2 -> 2.3
 2019-04-30 19:16:59 +00:00
R. RyanTM
62cd9ccca4 eprover: 2.2 -> 2.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eprover/versions
 2019-04-30 10:05:27 -07:00
Gabriel Ebner
a35df16d5f
kicad: fix #49089 by adding libraries files (#57452) 
kicad: fix #49089 by adding libraries files
 2019-04-30 17:38:16 +02:00
volth
5ad79dc4bb compilation for particular x86_64 architecture 2019-04-30 14:28:04 +00:00
Matthew Bauer
a3990c9f6d
Merge pull request #60447 from matthewbauer/macos-10-12-fixups 
Fixup from macos-10-12 branch
 2019-04-30 10:06:45 -04:00
Frederik Rietdijk
3462fe27d9 Merge staging-next into staging 2019-04-30 15:52:19 +02:00
Matthew Bauer
74c784a79c treewide: make -Wno-error flags clang-only 
In 724e833ea2, I was a little too aggressive in enabling these flags.
Many don’t work in gcc, and we should probably avoid settings them
widely. This makes those flags optional on isclang
 2019-04-29 21:34:24 -04:00
Mario Rodas
7a965dcdab cedille: 1.0.0 -> 1.1.1 (#60307) 2019-04-29 21:02:44 +02:00
Daniel Schaefer
786f02f7a4 treewide: Remove usage of isNull 
isNull "is deprecated; just write e == null instead" says the Nix manual
 2019-04-29 14:05:50 +02:00
Timo Kaufmann
6dabc28cd0 sage: add compatibility for R 3.6.0 
The random number generator seems to have changed. Because of this, a
trivial test adjustment is needed.
 2019-04-29 13:37:07 +02:00
Alex Branham
4264ad4c2b R: 3.5.3 -> 3.6.0 
The patch is necessary for the test suite to pass without errors. The
fix has already been made upstream but didn't make it into the 3.6.0
release.

Closes https://github.com/NixOS/nixpkgs/pull/60273.
 2019-04-29 13:35:21 +02:00
Bruno Bzeznik
83886b3d91 aragorn: init at 1.2.38 (#58354) 2019-04-29 07:18:03 -04:00
Ben
535c38dd73 GeoGebra: 472 -> 535 (#60272) 
* Update GeoGebra

* Update default.nix
 2019-04-29 11:25:37 +02:00
Timo Kaufmann
31709b611f R: add timokau as a maintainer 
I'm interested in R as a dependency for sage. R changes are likely to
impact sage, so I'd like to get notified on those changes.
 2019-04-28 13:20:47 +02:00
Matthew Bauer
87944c3125
Merge pull request #56744 from matthewbauer/macos-10-12 
Update macOS to 10.12
 2019-04-26 22:20:03 -04:00
Matthew Bauer
724e833ea2 treewide: disable -Werror for llvm 7 
Some of these have errors on newest llvm. It’s easiest to just add
-Wno-error in these cases.
 2019-04-26 21:55:04 -04:00
Renaud
5560607988
Merge pull request #59484 from r-ryantm/auto-update/eagle 
eagle: 9.3.1 -> 9.3.2
 2019-04-25 23:32:25 +02:00
Renaud
71c6157fd7
Merge pull request #58534 from bzizou/sumatools.dev 
sumatools: init at 1.0.34
 2019-04-24 22:34:35 +02:00
Renaud
9f26d537e8
Merge pull request #59516 from r-ryantm/auto-update/gmsh 
gmsh: 4.2.2 -> 4.2.3
 2019-04-24 20:40:56 +02:00
worldofpeace
c8c0bd1fea
Merge pull request #51285 from expipiplus1/fped 
fped: init at unstable-2017-05-11
 2019-04-23 06:52:50 -04:00
markuskowa
d0e70ac2d3
Merge pull request #60010 from JohnAZoidberg/https-urls 
HTTPS urls
 2019-04-22 23:37:07 +02:00
Austin Seipp
b0fea1dc9c
verilog: 2018.12.15 -> 2019.03.27, parallel build 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2019-04-22 14:27:45 -05:00
Austin Seipp
fe8eb566b5
symbiyosys: 2019.03.28 -> 2019.04.18 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2019-04-22 14:27:45 -05:00
Daniel Schaefer
bac4d95aa2 treewide: Change URLs to HTTPS 
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
 2019-04-22 10:19:54 +02:00
Timo Kaufmann
512097dece
Merge pull request #59921 from timokau/gap-update 
gap: 4.10.0 -> 4.10.1
 2019-04-20 13:17:04 +02:00
R. RyanTM
0dc3184871 picard-tools: 2.18.27 -> 2.19.0 (#59634) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-04-20 13:15:40 +02:00
Timo Kaufmann
9c7f774a39 gap: mark as broken on darwin 
Has been failing to build for a while.
 2019-04-20 12:36:11 +02:00
Timo Kaufmann
af6739fdd7 gap: 4.10.0 -> 4.10.1 2019-04-20 09:54:27 +02:00
Aaron Andersen
77dbfa3a55
Merge pull request #53803 from jfrankenau/init-groove 
groove: init at 5.7.4
 2019-04-19 20:27:18 -04:00
Aaron Andersen
11cf1a282d
Merge pull request #58377 from bzizou/exonerate 
exonerate: init at 2.4.0
 2019-04-19 13:25:49 -04:00
Mario Rodas
f84a7b3828
Merge pull request #59834 from luispedro/add_prodigal 
Prodigal: init at 2.6.3
 2019-04-19 09:50:03 -05:00
Bruno Bzeznik
6a8c9bff8f exonerate: init at 2.4.0 2019-04-19 14:58:57 +02:00
Bruno Bzeznik
90b4796c60 sumatools: init at 1.0.34 2019-04-19 14:43:40 +02:00
Johannes Frankenau
e7f021ca93 groove: init at 5.7.4 2019-04-19 13:34:30 +02:00
Luis Pedro Coelho
3fc55eec05 Prodigal: init at 2.6.3 2019-04-19 08:38:14 +02:00
Timo Kaufmann
49b8efcb84 sage: 8.6 -> 8.7 
https://groups.google.com/forum/#!topic/sage-release/3m8PV9JkFro
 2019-04-17 22:44:32 +02:00
Timo Kaufmann
e0e5445667 sage: fix another transient sig_on bug 
Caused a test failure on hydra, backporting upstream fix.
 2019-04-17 19:58:07 +02:00
R. RyanTM
d11731130d star: 2.7.0c -> 2.7.0f 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
 2019-04-16 18:30:49 +02:00
Michael Raskin
3d3a415f24 petrinizer: init at 0.9.1.1 2019-04-16 15:11:03 +02:00
Austin Seipp
bb27856a5c
Merge pull request #59522 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.99 -> 3.3.100
 2019-04-16 02:12:25 -05:00
Matthew Bauer
f475aeaf29
Merge pull request #59535 from matthewbauer/homepage-fixes 
treewide: update homepages to https where available
 2019-04-15 20:47:30 -04:00
Matthew Bauer
290a5d916e treewide: update homepages to https where available 
Based on "problems" from repology:

https://repology.org/repository/nix_unstable/problems

Mostly simple changes to reflect redirects.
 2019-04-15 10:10:05 -04:00
R. RyanTM
c906798997 jmol: 14.29.32 -> 14.29.36 (#59546) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-04-15 12:02:41 +02:00
Austin Seipp
a5add1e623
symbiyosys: 2018.12.09 -> 2019.03.28 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2019-04-15 00:17:54 -05:00
Luis Pedro Coelho
13a1f2c296 eggnog-mapper: init at 1.0.3 (#58905) 2019-04-14 17:22:47 -07:00
R. RyanTM
8a4ad20ed0 gtkwave: 3.3.99 -> 3.3.100 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
 2019-04-14 14:47:32 -07:00
R. RyanTM
00d17e36ea gmsh: 4.2.2 -> 4.2.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2019-04-14 13:15:32 -07:00
Timo Kaufmann
62c288ec20
python.pkgs.sympy: 1.3 -> 1.4 (#59482) 2019-04-14 17:52:03 +02:00
Michael Raskin
796050fedd openmvs: mark as broken 2019-04-14 17:45:21 +02:00
R. RyanTM
c3a9b4e1fd eagle: 9.3.1 -> 9.3.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
 2019-04-14 07:47:26 -07:00
markuskowa
87f595a1f0
Merge pull request #56615 from r-ryantm/auto-update/clp 
clp: 1.16.11 -> 1.17.0
 2019-04-14 12:05:32 +02:00
Markus Kowalewski
19dfffff3c
clp: restrict to x86_64-linux + darwin 2019-04-14 00:17:25 +02:00
Markus Kowalewski
e879991e1b
clp: 1.17.0 -> 1.17.11 2019-04-14 00:04:06 +02:00
Joe Hermaszewski
0e2d27f5af fped: init at 2017-05-11 2019-04-13 13:36:46 +08:00
Julien Dehos
a13f5d0da1 mxnet: fix cuda support enabled build (#48781) 2019-04-12 10:31:22 +00:00
Frederik Rietdijk
993e2b4ec2
Merge pull request #59098 from NixOS/staging-next 
Staging next
 2019-04-11 18:23:14 +02:00
Frederik Rietdijk
230c67f43b Merge master into staging-next 2019-04-11 07:50:23 +02:00
Dmitry Kalinkin
c321b64b3f
snakemake: 5.2.2 -> 5.4.4 2019-04-10 14:18:26 -04:00
xeji
cc118b4426
Merge pull request #58676 from smaret/gildas-update 
gildas: update to 20190401_a
 2019-04-10 14:30:50 +02:00
Frederik Rietdijk
d108b49168 Merge master into staging-next 2019-04-09 16:38:35 +02:00
Vladimír Čunát
f7ddff5c6d
R: fix regression from commit cbade453 #58989 
Normally the directory is created in fixup phase.
 2019-04-07 17:38:45 +02:00
Frederik Rietdijk
7f7da0a16f Merge master into staging-next 2019-04-07 15:14:52 +02:00
rhokue
cbade453ac R: explicitly declare which as a run-time dependency 
Fixes https://github.com/NixOS/nixpkgs/issues/58963.
Closes https://github.com/NixOS/nixpkgs/pull/58989.
 2019-04-07 11:12:43 +02:00
Frederik Rietdijk
4a125f6b20 Merge master into staging-next 2019-04-07 08:33:41 +02:00
Timo Kaufmann
ceede33ddf
python.pkgs.cypari2: 2.0.3 -> 2.1.0 (#59085) 2019-04-06 21:46:13 +00:00
Pascal Wittmann
cfb6ade58c
Merge pull request #58931 from bzizou/migrate 
migrate: init at 3.7.2
 2019-04-06 14:23:50 +02:00
Vincent Laporte
50a03f8632 hol_light: 2018-09-30 -> 2019-03-27 2019-04-06 11:03:29 +02:00
Timo Kaufmann
6662fbc822
Merge pull request #58961 from timokau/nauty-features 
nauty: disable cpu feature detection
 2019-04-05 13:12:05 +00:00
Jan Tojnar
cb1a20499a
Merge branch 'master' into staging 2019-04-05 11:37:15 +02:00
Bruno Bzeznik
0b03f44c2f migrate: init at 3.7.2 2019-04-05 09:01:36 +02:00
Timo Kaufmann
7f22a42976 nauty: disable cpu feature detection 2019-04-04 14:54:55 +02:00
Timo Kaufmann
15045e6233 nauty: add timokau as a maintainer 
I'm interested in this package as a sage dependency.
 2019-04-04 14:54:31 +02:00
Timo Kaufmann
5880c449dd nauty: small refactoring 2019-04-04 14:54:05 +02:00
R. RyanTM
9f68f2a7dc verilator: 4.010 -> 4.012 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2019-04-03 13:43:11 -05:00
markuskowa
e2ce5fd7fe
Merge pull request #58860 from r-ryantm/auto-update/quantum-espresso 
quantum-espresso: 6.3 -> 6.4
 2019-04-03 15:42:40 +02:00
Markus Kowalewski
c109aaa5cb
quantum-espresso: remove outdated makefile fix 2019-04-03 15:00:17 +02:00